Wall clock time and date at job start Mon Mar 30 2020 03:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47187 * 2 1 4 4 H 1.08999 * 110.33503 * 304.20409 * 3 2 1 5 5 C 1.54482 * 110.37184 * 181.83302 * 3 2 1 6 6 C 1.54795 * 104.09044 * 217.20037 * 5 3 2 7 7 H 1.09001 * 110.55176 * 118.57275 * 6 5 3 8 8 N 1.46890 * 110.60256 * 241.37426 * 6 5 3 9 9 C 1.46898 * 111.00228 * 299.93525 * 8 6 5 10 10 C 1.46905 * 111.00124 * 175.98195 * 8 6 5 11 11 C 1.50699 * 109.47505 * 190.00070 * 10 8 6 12 12 H 1.08002 * 119.99742 * 0.02562 * 11 10 8 13 13 C 1.37873 * 120.00629 * 179.97438 * 11 10 8 14 14 N 1.31507 * 120.00558 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 119.99492 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46634 * 90.00283 * 15 13 11 17 17 H 1.48499 * 109.47358 * 209.99962 * 15 13 11 18 18 H 1.48499 * 109.47522 * 330.00417 * 15 13 11 19 19 C 1.54484 * 103.92528 * 359.97438 * 6 5 3 20 20 O 1.44418 * 104.90071 * 24.00274 * 19 6 5 21 21 H 1.08999 * 109.46954 * 299.99577 * 1 2 3 22 22 H 1.08996 * 109.46946 * 60.00110 * 1 2 3 23 23 H 1.08996 * 109.47028 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47124 * 239.99896 * 2 1 3 25 25 H 1.09002 * 109.47017 * 120.00601 * 2 1 3 26 26 H 1.09002 * 110.50759 * 335.83545 * 5 3 2 27 27 H 1.08997 * 110.50888 * 98.54679 * 5 3 2 28 28 H 1.09000 * 109.47102 * 60.00160 * 9 8 6 29 29 H 1.09000 * 109.47323 * 179.97438 * 9 8 6 30 30 H 1.08995 * 109.47049 * 300.00072 * 9 8 6 31 31 H 1.09004 * 109.47162 * 310.00202 * 10 8 6 32 32 H 1.09001 * 109.47285 * 70.00005 * 10 8 6 33 33 H 0.97003 * 119.99812 * 179.97438 * 14 13 11 34 34 H 1.09002 * 110.37173 * 265.11623 * 19 6 5 35 35 H 1.08999 * 110.37313 * 142.89045 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6247 1.9911 -0.8453 5 6 3.5840 1.4670 -0.0463 6 6 3.9694 2.6589 0.8630 7 1 4.5672 2.3178 1.7082 8 7 4.6954 3.6802 0.0964 9 6 5.9295 3.1286 -0.4787 10 6 4.9822 4.8573 0.9273 11 6 5.5017 5.9723 0.0567 12 1 5.6078 5.8218 -1.0075 13 6 5.8405 7.1849 0.6185 14 7 6.2943 8.1578 -0.1411 15 14 5.6549 7.4460 2.4589 16 1 6.9146 7.0583 3.1433 17 1 5.3650 8.8771 2.7292 18 1 4.5379 6.6100 2.9674 19 6 2.6106 3.2109 1.3483 20 8 1.6976 2.0971 1.2408 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.9927 0.5373 0.3496 27 1 3.9329 1.6355 -1.0651 28 1 5.6821 2.3019 -1.1447 29 1 6.4471 3.9055 -1.0413 30 1 6.5746 2.7689 0.3228 31 1 4.0687 5.1813 1.4260 32 1 5.7327 4.6003 1.6748 33 1 6.5323 9.0110 0.2542 34 1 2.2846 4.0318 0.7096 35 1 2.6840 3.5429 2.3839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711249759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:26 Heat of formation + Delta-G solvation = -69.086769 kcal Electronic energy + Delta-G solvation = -14779.418686 eV Core-core repulsion = 12390.391271 eV Total energy + Delta-G solvation = -2389.027415 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.79528 -37.80280 -34.70511 -34.44778 -31.94106 -29.72854 -29.17693 -26.13814 -24.57024 -23.10489 -21.89109 -21.01303 -19.03133 -17.48531 -17.00241 -16.80031 -16.34553 -15.56682 -15.34713 -14.75176 -14.46944 -14.29837 -14.05379 -13.95111 -13.43509 -13.17972 -12.96941 -12.65529 -12.42254 -12.19598 -11.91450 -11.85490 -11.82266 -11.68623 -11.44349 -11.33552 -10.80535 -10.70771 -9.10815 -8.29664 -6.33074 1.33053 1.35067 1.45369 2.32799 2.84682 3.03340 3.27739 3.57344 3.76007 4.03654 4.20226 4.24751 4.37067 4.41960 4.50973 4.62554 4.65419 4.77839 4.83271 4.88764 4.92729 4.96501 5.00892 5.10394 5.12162 5.22675 5.27262 5.46615 5.52062 5.82877 5.98055 6.31212 6.61928 6.73288 7.30569 8.86821 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049743 B = 0.007191 C = 0.006720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.757981 B = 3893.016391 C = 4165.952645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.071 3.929 4 H 0.063 0.937 5 C -0.135 4.135 6 C 0.045 3.955 7 H 0.048 0.952 8 N -0.537 5.537 9 C 0.038 3.962 10 C 0.168 3.832 11 C -0.517 4.517 12 H 0.040 0.960 13 C 0.010 3.990 14 N -0.947 5.947 15 Si 0.943 3.057 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.249 1.249 19 C 0.055 3.945 20 O -0.383 6.383 21 H 0.044 0.956 22 H 0.053 0.947 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.020 0.980 31 H 0.032 0.968 32 H -0.015 1.015 33 H 0.267 0.733 34 H 0.056 0.944 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 -16.376 2.731 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C 0.014 3.986 4 H 0.081 0.919 5 C -0.173 4.173 6 C -0.065 4.065 7 H 0.066 0.934 8 N -0.262 5.262 9 C -0.110 4.110 10 C 0.041 3.959 11 C -0.555 4.555 12 H 0.058 0.942 13 C -0.187 4.187 14 N -0.587 5.587 15 Si 0.766 3.234 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.172 1.172 19 C -0.022 4.022 20 O -0.303 6.303 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.003 0.997 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.115 -16.128 2.497 18.226 hybrid contribution 0.970 0.774 1.047 1.623 sum -7.146 -15.353 3.544 17.302 Atomic orbital electron populations 1.21713 0.95126 1.02193 1.01622 1.21610 0.96862 0.92877 1.03569 1.23177 0.93627 0.95027 0.86760 0.91903 1.23096 0.95945 0.97224 1.01041 1.23112 0.95280 0.92619 0.95440 0.93427 1.62004 1.23134 1.05957 1.35092 1.22252 0.90427 0.99511 0.98795 1.19991 0.94910 0.88978 0.91979 1.21245 1.42251 0.96884 0.95102 0.94169 1.25805 0.94389 0.95470 1.03070 1.70038 1.46023 1.04831 1.37845 0.85780 0.79794 0.77926 0.79884 1.19297 1.20604 1.17245 1.23358 0.87806 0.89603 1.01459 1.89059 1.56845 1.43097 1.41255 0.93645 0.92747 0.91147 0.88737 0.91073 0.88935 0.89387 0.89774 0.93087 0.96181 0.94968 0.99709 0.92396 0.92587 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.83 71.98 0.71 -2.02 16 2 C -0.11 -2.12 5.57 30.60 0.17 -1.95 16 3 C 0.07 1.83 3.27 31.10 0.10 1.93 16 4 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 5 C -0.14 -3.50 5.79 31.71 0.18 -3.31 16 6 C 0.04 1.47 2.85 46.03 0.13 1.60 16 7 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 8 N -0.54 -21.87 4.55 -895.06 -4.07 -25.94 16 9 C 0.04 1.41 9.10 127.69 1.16 2.57 16 10 C 0.17 8.04 3.65 85.56 0.31 8.36 16 11 C -0.52 -29.82 9.01 25.60 0.23 -29.59 16 12 H 0.04 2.58 7.37 -2.91 -0.02 2.56 16 13 C 0.01 0.59 5.47 84.65 0.46 1.05 16 14 N -0.95 -59.16 13.96 21.44 0.30 -58.86 16 15 Si 0.94 43.94 27.47 68.60 1.88 45.82 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 19 C 0.05 1.84 5.92 72.49 0.43 2.27 16 20 O -0.38 -11.86 11.00 -148.98 -1.64 -13.50 16 21 H 0.04 0.97 7.91 -2.39 -0.02 0.95 16 22 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.09 1.98 7.87 -2.39 -0.02 1.96 16 27 H 0.09 2.27 6.49 -2.39 -0.02 2.26 16 28 H 0.08 2.51 6.38 -2.39 -0.02 2.50 16 29 H 0.05 2.19 6.76 -2.39 -0.02 2.17 16 30 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.03 1.52 5.83 -2.38 -0.01 1.51 16 32 H -0.01 -0.70 7.55 -2.39 -0.02 -0.72 16 33 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 34 H 0.06 2.08 7.89 -2.39 -0.02 2.06 16 35 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -65.08 275.68 1.35 -63.74 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 0.98 Total: 7.84 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 3.89 Total: -19.09 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -3.77 Total: -84.81 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -1.64 Total: -13.50 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -65.08 1.35 -63.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711249759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.351 kcal (2) G-P(sol) polarization free energy of solvation -65.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds