Wall clock time and date at job start Mon Mar 30 2020 03:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46984 * 2 1 4 4 H 1.09003 * 110.33182 * 55.79081 * 3 2 1 5 5 C 1.54476 * 110.37314 * 178.15893 * 3 2 1 6 6 C 1.54507 * 104.06101 * 142.80570 * 5 3 2 7 7 H 1.08997 * 110.51453 * 241.35298 * 6 5 3 8 8 N 1.46908 * 110.50579 * 118.65070 * 6 5 3 9 9 C 1.46906 * 110.99789 * 189.55138 * 8 6 5 10 10 C 1.46890 * 111.00193 * 65.59916 * 8 6 5 11 11 C 1.50706 * 109.47193 * 189.99755 * 10 8 6 12 12 H 1.07993 * 119.99749 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00130 * 179.97438 * 11 10 8 14 14 N 1.31516 * 120.00349 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00030 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46727 * 90.00747 * 15 13 11 17 17 H 1.48498 * 109.47298 * 210.00108 * 15 13 11 18 18 H 1.48493 * 109.47428 * 330.00761 * 15 13 11 19 19 C 1.54475 * 104.06429 * 0.02562 * 6 5 3 20 20 O 1.44424 * 110.37095 * 293.54236 * 3 2 1 21 21 H 1.08998 * 109.47582 * 300.00164 * 1 2 3 22 22 H 1.09004 * 109.47266 * 60.00483 * 1 2 3 23 23 H 1.09006 * 109.47076 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47582 * 239.99836 * 2 1 3 25 25 H 1.09004 * 109.46578 * 119.99813 * 2 1 3 26 26 H 1.08996 * 110.51333 * 261.45771 * 5 3 2 27 27 H 1.09001 * 110.50871 * 24.16717 * 5 3 2 28 28 H 1.09005 * 109.46852 * 65.37083 * 9 8 6 29 29 H 1.08996 * 109.47026 * 185.36706 * 9 8 6 30 30 H 1.08998 * 109.47157 * 305.37634 * 9 8 6 31 31 H 1.09002 * 109.47535 * 309.99684 * 10 8 6 32 32 H 1.08997 * 109.47574 * 69.99718 * 10 8 6 33 33 H 0.96994 * 120.00370 * 179.97438 * 14 13 11 34 34 H 1.09000 * 110.37195 * 217.18849 * 19 6 5 35 35 H 1.08994 * 110.37510 * 94.85133 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6244 1.9911 0.8453 5 6 3.5838 1.4671 0.0465 6 6 3.9678 2.6571 -0.8611 7 1 4.5665 2.3158 -1.7055 8 7 4.6938 3.6771 -0.0926 9 6 4.8659 4.9057 -0.8795 10 6 5.9894 3.1635 0.3715 11 6 6.5931 4.1358 1.3520 12 1 6.0668 5.0441 1.6053 13 6 7.8169 3.8651 1.9264 14 7 8.4578 2.7588 1.6183 15 14 8.5656 5.0706 3.1412 16 1 8.1230 4.7266 4.5164 17 1 10.0467 4.9952 3.0646 18 1 8.1222 6.4482 2.8087 19 6 2.6105 3.2111 -1.3481 20 8 1.6976 2.0968 -1.2412 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 3.9326 1.6356 1.0653 27 1 3.9926 0.5374 -0.3493 28 1 3.8910 5.3546 -1.0700 29 1 5.4874 5.6085 -0.3247 30 1 5.3467 4.6654 -1.8278 31 1 5.8447 2.1992 0.8585 32 1 6.6589 3.0436 -0.4802 33 1 9.3189 2.5685 2.0221 34 1 2.6853 3.5418 -2.3840 35 1 2.2845 4.0319 -0.7094 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711249760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:28 Heat of formation + Delta-G solvation = -53.336732 kcal Electronic energy + Delta-G solvation = -14743.910115 eV Core-core repulsion = 12355.565673 eV Total energy + Delta-G solvation = -2388.344442 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.41662 -36.08424 -33.41164 -32.57356 -30.32721 -28.19317 -26.69607 -24.96187 -23.01102 -21.73598 -20.76174 -19.39503 -16.56944 -15.81510 -15.61113 -15.50341 -14.69357 -13.84791 -13.62560 -13.52555 -13.05779 -12.86736 -12.44759 -12.12132 -11.91583 -11.43719 -11.17989 -11.01264 -10.93632 -10.87523 -10.62745 -10.50980 -10.31302 -10.16984 -9.80638 -9.45190 -9.17810 -8.45433 -7.30427 -6.05080 -4.06599 3.30621 3.36632 3.40083 4.16561 4.40723 4.86719 4.92875 5.04228 5.26872 5.30415 5.33615 5.44935 5.63142 5.65349 5.79668 5.95896 6.01046 6.05518 6.09278 6.12713 6.26484 6.29422 6.36996 6.44084 6.54374 6.72796 7.10797 7.27793 7.31579 7.78048 8.06118 8.15471 8.51577 9.01098 9.57690 11.05837 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.044846 B = 0.006904 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.210950 B = 4054.385417 C = 4373.702434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.068 0.932 5 C -0.141 4.141 6 C 0.051 3.949 7 H 0.042 0.958 8 N -0.532 5.532 9 C 0.033 3.967 10 C 0.190 3.810 11 C -0.508 4.508 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.053 3.947 20 O -0.378 6.378 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.011 0.989 31 H 0.034 0.966 32 H -0.010 1.010 33 H 0.261 0.739 34 H 0.082 0.918 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.291 -2.419 -3.893 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C 0.020 3.980 4 H 0.086 0.914 5 C -0.179 4.179 6 C -0.058 4.058 7 H 0.060 0.940 8 N -0.258 5.258 9 C -0.116 4.116 10 C 0.065 3.935 11 C -0.547 4.547 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.024 4.024 20 O -0.297 6.297 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.111 0.889 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.029 0.971 31 H 0.052 0.948 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.574 -2.472 -3.596 12.369 hybrid contribution 1.312 0.451 0.068 1.389 sum -10.261 -2.021 -3.528 11.038 Atomic orbital electron populations 1.21717 0.95646 1.01088 1.02136 1.21597 0.96310 0.95050 1.02574 1.23010 0.94291 0.93354 0.87322 0.91396 1.23008 0.94703 0.97764 1.02416 1.22913 0.94958 0.93073 0.94893 0.94003 1.62298 1.23764 1.03583 1.36113 1.22264 0.99700 0.94015 0.95623 1.19772 0.82685 0.96424 0.94582 1.21159 1.03002 1.06154 1.24359 0.91837 1.24989 0.97013 0.95582 0.97012 1.69958 1.15322 1.24638 1.43909 0.86494 0.78101 0.81358 0.81428 1.20614 1.21321 1.19856 1.23469 0.88270 0.89749 1.00882 1.89042 1.56900 1.43317 1.40487 0.92928 0.92203 0.93104 0.91372 0.90751 0.88856 0.91289 0.93472 0.90327 0.97088 0.94813 0.99227 0.92905 0.90003 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.83 37.16 0.37 -1.29 16 2 C -0.12 -1.48 5.57 -26.73 -0.15 -1.63 16 3 C 0.08 1.18 3.27 -25.96 -0.08 1.09 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 5 C -0.14 -2.44 5.65 -25.17 -0.14 -2.58 16 6 C 0.05 0.95 2.83 -66.14 -0.19 0.76 16 7 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 8 N -0.53 -11.45 4.53 -234.44 -1.06 -12.51 16 9 C 0.03 0.63 9.03 60.07 0.54 1.17 16 10 C 0.19 4.93 4.53 -4.98 -0.02 4.91 16 11 C -0.51 -14.17 8.38 -34.44 -0.29 -14.46 16 12 H 0.06 1.75 7.17 -52.49 -0.38 1.38 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 15 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.05 0.86 6.12 37.93 0.23 1.09 16 20 O -0.38 -6.16 11.00 -35.23 -0.39 -6.55 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.09 1.79 6.96 -51.93 -0.36 1.43 16 27 H 0.07 1.13 7.87 -51.93 -0.41 0.73 16 28 H 0.05 0.77 6.88 -51.93 -0.36 0.42 16 29 H 0.08 1.64 6.66 -51.93 -0.35 1.29 16 30 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 31 H 0.03 0.92 6.54 -51.93 -0.34 0.58 16 32 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.10 7.44 -51.93 -0.39 0.71 16 LS Contribution 279.32 15.07 4.21 4.21 Total: -1.00 -29.41 279.32 -7.28 -36.69 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -5.92 Total: -2.99 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 0.17 Total: -9.47 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.33 Total: -38.38 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.39 Total: -6.55 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.41 -7.28 -36.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711249760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.649 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds