Wall clock time and date at job start Mon Mar 30 2020 03:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46984 * 2 1 4 4 H 1.09003 * 110.33182 * 55.79081 * 3 2 1 5 5 C 1.54476 * 110.37314 * 178.15893 * 3 2 1 6 6 C 1.54507 * 104.06101 * 142.80570 * 5 3 2 7 7 H 1.08997 * 110.51453 * 241.35298 * 6 5 3 8 8 N 1.46908 * 110.50579 * 118.65070 * 6 5 3 9 9 C 1.46906 * 110.99789 * 189.55138 * 8 6 5 10 10 C 1.46890 * 111.00193 * 65.59916 * 8 6 5 11 11 C 1.50706 * 109.47193 * 189.99755 * 10 8 6 12 12 H 1.07993 * 119.99749 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00130 * 179.97438 * 11 10 8 14 14 N 1.31516 * 120.00349 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00030 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46727 * 90.00747 * 15 13 11 17 17 H 1.48498 * 109.47298 * 210.00108 * 15 13 11 18 18 H 1.48493 * 109.47428 * 330.00761 * 15 13 11 19 19 C 1.54475 * 104.06429 * 0.02562 * 6 5 3 20 20 O 1.44424 * 110.37095 * 293.54236 * 3 2 1 21 21 H 1.08998 * 109.47582 * 300.00164 * 1 2 3 22 22 H 1.09004 * 109.47266 * 60.00483 * 1 2 3 23 23 H 1.09006 * 109.47076 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47582 * 239.99836 * 2 1 3 25 25 H 1.09004 * 109.46578 * 119.99813 * 2 1 3 26 26 H 1.08996 * 110.51333 * 261.45771 * 5 3 2 27 27 H 1.09001 * 110.50871 * 24.16717 * 5 3 2 28 28 H 1.09005 * 109.46852 * 65.37083 * 9 8 6 29 29 H 1.08996 * 109.47026 * 185.36706 * 9 8 6 30 30 H 1.08998 * 109.47157 * 305.37634 * 9 8 6 31 31 H 1.09002 * 109.47535 * 309.99684 * 10 8 6 32 32 H 1.08997 * 109.47574 * 69.99718 * 10 8 6 33 33 H 0.96994 * 120.00370 * 179.97438 * 14 13 11 34 34 H 1.09000 * 110.37195 * 217.18849 * 19 6 5 35 35 H 1.08994 * 110.37510 * 94.85133 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6244 1.9911 0.8453 5 6 3.5838 1.4671 0.0465 6 6 3.9678 2.6571 -0.8611 7 1 4.5665 2.3158 -1.7055 8 7 4.6938 3.6771 -0.0926 9 6 4.8659 4.9057 -0.8795 10 6 5.9894 3.1635 0.3715 11 6 6.5931 4.1358 1.3520 12 1 6.0668 5.0441 1.6053 13 6 7.8169 3.8651 1.9264 14 7 8.4578 2.7588 1.6183 15 14 8.5656 5.0706 3.1412 16 1 8.1230 4.7266 4.5164 17 1 10.0467 4.9952 3.0646 18 1 8.1222 6.4482 2.8087 19 6 2.6105 3.2111 -1.3481 20 8 1.6976 2.0968 -1.2412 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 3.9326 1.6356 1.0653 27 1 3.9926 0.5374 -0.3493 28 1 3.8910 5.3546 -1.0700 29 1 5.4874 5.6085 -0.3247 30 1 5.3467 4.6654 -1.8278 31 1 5.8447 2.1992 0.8585 32 1 6.6589 3.0436 -0.4802 33 1 9.3189 2.5685 2.0221 34 1 2.6853 3.5418 -2.3840 35 1 2.2845 4.0319 -0.7094 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711249760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:28 Heat of formation + Delta-G solvation = -72.818276 kcal Electronic energy + Delta-G solvation = -14744.754898 eV Core-core repulsion = 12355.565673 eV Total energy + Delta-G solvation = -2389.189225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.78622 -37.73427 -34.77209 -34.39139 -31.79896 -29.86668 -28.22214 -26.74540 -24.21528 -23.57937 -21.93908 -20.97696 -18.58977 -17.37786 -16.98912 -16.81076 -16.56511 -15.40396 -15.21528 -14.92235 -14.38677 -14.09675 -13.88079 -13.84005 -13.51110 -13.01732 -12.81279 -12.64097 -12.42900 -12.31533 -12.23093 -11.90793 -11.80397 -11.60983 -11.43447 -11.25139 -10.69572 -10.61469 -9.08873 -8.21564 -6.31672 1.41395 1.42622 1.53721 2.39470 2.88358 3.11374 3.31536 3.62217 3.76206 4.03981 4.20253 4.26321 4.34290 4.45245 4.53302 4.62940 4.67861 4.77726 4.86540 4.90793 5.02460 5.08335 5.10629 5.12385 5.18855 5.24722 5.29132 5.45976 5.63087 5.84046 6.05539 6.27523 6.60521 6.84397 7.38102 8.89745 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.044846 B = 0.006904 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.210950 B = 4054.385417 C = 4373.702434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.082 3.918 4 H 0.070 0.930 5 C -0.141 4.141 6 C 0.044 3.956 7 H 0.033 0.967 8 N -0.536 5.536 9 C 0.034 3.966 10 C 0.206 3.794 11 C -0.524 4.524 12 H 0.064 0.936 13 C 0.002 3.998 14 N -0.935 5.935 15 Si 0.970 3.030 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.263 1.263 19 C 0.063 3.937 20 O -0.381 6.381 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.013 0.987 31 H 0.012 0.988 32 H -0.043 1.043 33 H 0.264 0.736 34 H 0.103 0.897 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.514 -1.762 -3.685 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.025 3.975 4 H 0.087 0.913 5 C -0.179 4.179 6 C -0.065 4.065 7 H 0.051 0.949 8 N -0.262 5.262 9 C -0.115 4.115 10 C 0.080 3.920 11 C -0.562 4.562 12 H 0.082 0.918 13 C -0.196 4.196 14 N -0.576 5.576 15 Si 0.794 3.206 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.188 1.188 19 C -0.014 4.014 20 O -0.300 6.300 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.030 0.970 32 H -0.025 1.025 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.823 -1.809 -3.399 13.388 hybrid contribution 1.675 0.216 -0.036 1.689 sum -11.148 -1.593 -3.435 11.774 Atomic orbital electron populations 1.21684 0.94259 1.02284 1.01949 1.21619 0.97477 0.93161 1.03111 1.23053 0.92377 0.95045 0.87039 0.91251 1.22983 0.96716 0.97512 1.00701 1.23044 0.95920 0.93035 0.94534 0.94941 1.62228 1.21292 1.04892 1.37776 1.22297 1.01464 0.92730 0.94961 1.19415 0.84175 0.95379 0.93025 1.21469 1.03498 1.06460 1.24797 0.91756 1.25912 0.97463 0.97370 0.98865 1.70086 1.15799 1.26523 1.45169 0.85373 0.77144 0.79188 0.78854 1.19846 1.20858 1.18764 1.23429 0.86281 0.89624 1.02090 1.89049 1.56700 1.43384 1.40897 0.92463 0.93011 0.91275 0.91419 0.89698 0.91230 0.90986 0.89870 0.92126 0.96844 0.97000 1.02518 0.92683 0.87866 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.83 71.98 0.71 -2.17 16 2 C -0.12 -2.71 5.57 30.59 0.17 -2.54 16 3 C 0.08 2.39 3.27 31.10 0.10 2.49 16 4 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 5 C -0.14 -4.90 5.65 31.61 0.18 -4.72 16 6 C 0.04 1.62 2.83 45.93 0.13 1.75 16 7 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 8 N -0.54 -23.20 4.53 -895.63 -4.05 -27.26 16 9 C 0.03 1.27 9.03 127.69 1.15 2.42 16 10 C 0.21 11.04 4.53 85.56 0.39 11.42 16 11 C -0.52 -29.64 8.38 25.60 0.21 -29.43 16 12 H 0.06 3.55 7.17 -2.91 -0.02 3.53 16 13 C 0.00 0.11 5.46 84.65 0.46 0.57 16 14 N -0.94 -56.37 13.29 21.45 0.28 -56.08 16 15 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 19 C 0.06 1.89 6.12 72.48 0.44 2.33 16 20 O -0.38 -11.66 11.00 -148.98 -1.64 -13.30 16 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.05 1.11 7.91 -2.38 -0.02 1.10 16 23 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 2.75 6.96 -2.39 -0.02 2.73 16 27 H 0.07 2.40 7.87 -2.39 -0.02 2.38 16 28 H 0.08 2.54 6.88 -2.38 -0.02 2.52 16 29 H 0.06 2.50 6.66 -2.39 -0.02 2.49 16 30 H 0.01 0.49 8.13 -2.39 -0.02 0.47 16 31 H 0.01 0.68 6.54 -2.39 -0.02 0.67 16 32 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16 33 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.07 2.13 7.44 -2.39 -0.02 2.11 16 Total: -1.00 -62.90 279.32 1.60 -61.30 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.03 Total: 7.10 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 3.95 Total: -17.87 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -3.77 Total: -83.34 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.64 Total: -13.30 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -62.90 1.60 -61.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711249760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.521 kcal (2) G-P(sol) polarization free energy of solvation -62.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds