Wall clock time and date at job start Mon Mar 30 2020 03:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 14 14 C 1.47480 * 110.99816 * 275.97218 * 13 3 2 15 15 C 1.53507 * 87.93203 * 221.29408 * 14 13 3 16 16 C 1.53002 * 114.16999 * 139.67355 * 15 14 13 17 17 H 1.09009 * 109.46951 * 326.15506 * 16 15 14 18 18 C 1.52998 * 109.47268 * 86.15855 * 16 15 14 19 19 O 1.42899 * 109.46961 * 206.16136 * 16 15 14 20 20 C 1.47481 * 110.99910 * 180.02562 * 13 3 2 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 27 27 H 1.08999 * 113.47752 * 336.06431 * 14 13 3 28 28 H 1.09006 * 113.47401 * 106.52514 * 14 13 3 29 29 H 1.08997 * 114.34459 * 272.36159 * 15 14 13 30 30 H 1.08997 * 109.46863 * 60.00292 * 18 16 15 31 31 H 1.08998 * 109.47133 * 180.02562 * 18 16 15 32 32 H 1.08998 * 109.47238 * 299.99799 * 18 16 15 33 33 H 0.96697 * 114.00243 * 299.99706 * 19 16 15 34 34 H 1.09002 * 113.47003 * 253.46258 * 20 13 3 35 35 H 1.09001 * 113.47780 * 23.93303 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6515 2.0992 1.2553 14 6 0.2775 2.6287 1.1715 15 6 0.7749 3.8815 1.9060 16 6 0.1955 5.1927 1.3712 17 1 0.0460 5.1114 0.2945 18 6 -1.1453 5.4733 2.0526 19 8 1.1029 6.2617 1.6466 20 6 2.1268 3.4949 1.2907 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.8292 -0.0604 -2.9503 27 1 -0.0506 2.8252 0.1508 28 1 -0.4469 2.0488 1.7434 29 1 0.7415 3.8080 2.9930 30 1 -0.9956 5.5546 3.1292 31 1 -1.5582 6.4072 1.6713 32 1 -1.8374 4.6579 1.8425 33 1 1.2829 6.3922 2.5877 34 1 2.9700 3.6494 1.9639 35 1 2.2921 3.9225 0.3018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719887349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:41 Heat of formation + Delta-G solvation = -48.822142 kcal Electronic energy + Delta-G solvation = -15014.222296 eV Core-core repulsion = 12626.073622 eV Total energy + Delta-G solvation = -2388.148675 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.28765 -38.00558 -35.81817 -33.55775 -31.96030 -29.81942 -27.49423 -26.27131 -24.88744 -23.05936 -21.24089 -20.71173 -18.50235 -17.58230 -17.17695 -16.50541 -15.92394 -15.72501 -15.18260 -14.56935 -14.42278 -13.81608 -13.59681 -13.44028 -13.26191 -13.10718 -12.82972 -12.70725 -12.61363 -12.41493 -12.08568 -11.71755 -11.60493 -11.36712 -11.15335 -10.77210 -10.60063 -10.47422 -9.47665 -8.14839 -6.27835 1.37985 1.38362 1.48930 2.38740 3.11353 3.25033 3.43437 3.80572 3.92180 4.27373 4.39397 4.42871 4.48881 4.59544 4.62140 4.68367 4.79458 4.82635 4.94565 4.95429 5.04472 5.14301 5.19632 5.28181 5.32527 5.47240 5.54553 5.59261 5.71729 6.12594 6.30446 6.55802 6.86159 6.94012 7.40959 8.89956 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032929 B = 0.009139 C = 0.007600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.121788 B = 3063.029286 C = 3683.211635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C 0.194 3.806 4 H -0.028 1.028 5 C -0.528 4.528 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.271 1.271 13 N -0.484 5.484 14 C 0.010 3.990 15 C -0.131 4.131 16 C 0.115 3.885 17 H 0.075 0.925 18 C -0.172 4.172 19 O -0.578 6.578 20 C 0.028 3.972 21 H 0.035 0.965 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.029 0.971 25 H 0.062 0.938 26 H 0.262 0.738 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.388 0.612 34 H 0.064 0.936 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.940 7.228 8.069 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C 0.086 3.914 4 H -0.011 1.011 5 C -0.566 4.566 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.196 1.196 13 N -0.206 5.206 14 C -0.119 4.119 15 C -0.150 4.150 16 C 0.056 3.944 17 H 0.093 0.907 18 C -0.229 4.229 19 O -0.385 6.385 20 C -0.102 4.102 21 H 0.054 0.946 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.238 0.762 34 H 0.083 0.917 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.724 6.672 7.743 12.811 hybrid contribution 1.013 0.058 -0.767 1.272 sum -6.711 6.730 6.976 11.790 Atomic orbital electron populations 1.21899 0.96229 1.00838 1.00903 1.21367 0.94517 0.98341 1.00310 1.19563 0.94243 0.92187 0.85421 1.01053 1.21418 0.92539 1.37624 1.05015 0.93188 1.25705 1.02679 0.94901 0.95357 1.70011 1.36483 1.39176 1.09871 0.85563 0.80314 0.78589 0.77237 1.19976 1.20636 1.19575 1.68864 1.04713 1.12830 1.34236 1.23790 0.93950 0.95094 0.99047 1.23537 0.95466 0.94697 1.01308 1.21828 0.89049 0.84316 0.99197 0.90656 1.22375 0.96234 1.02638 1.01663 1.86562 1.66941 1.53286 1.31743 1.23270 0.97726 0.90263 0.98899 0.94624 0.91523 0.93011 0.95214 0.91913 0.92873 0.93145 0.88803 0.86422 0.90635 0.91689 0.90955 0.76232 0.91700 0.94353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.61 9.13 71.98 0.66 -4.95 16 2 C -0.11 -5.32 5.45 30.59 0.17 -5.15 16 3 C 0.19 10.09 1.37 44.16 0.06 10.15 16 4 H -0.03 -1.62 7.52 -2.39 -0.02 -1.64 16 5 C -0.53 -30.22 8.08 25.60 0.21 -30.01 16 6 H 0.05 2.89 7.43 -2.91 -0.02 2.86 16 7 C 0.01 0.71 5.29 84.65 0.45 1.16 16 8 N -0.92 -53.85 11.30 21.45 0.24 -53.61 16 9 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.48 -21.04 6.10 -907.37 -5.54 -26.58 16 14 C 0.01 0.35 5.13 83.54 0.43 0.78 16 15 C -0.13 -3.78 3.66 -10.46 -0.04 -3.82 16 16 C 0.12 2.91 3.42 30.59 0.10 3.01 16 17 H 0.08 2.20 7.90 -2.38 -0.02 2.18 16 18 C -0.17 -3.08 9.53 71.98 0.69 -2.40 16 19 O -0.58 -14.94 13.15 -148.98 -1.96 -16.90 16 20 C 0.03 1.11 6.01 83.53 0.50 1.61 16 21 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.07 2.36 5.09 -2.39 -0.01 2.35 16 23 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 24 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 3.51 5.95 -2.39 -0.01 3.50 16 26 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 27 H 0.05 1.83 7.33 -2.39 -0.02 1.82 16 28 H 0.09 2.80 6.80 -2.38 -0.02 2.78 16 29 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.39 6.67 9.05 -74.06 -0.67 6.00 16 34 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.04 1.73 7.85 -2.39 -0.02 1.71 16 Total: -1.00 -64.95 276.85 -1.62 -66.56 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.39 Total: 13.14 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 3.22 Total: -29.62 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -5.29 Total: -80.19 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -1.96 Total: -16.90 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.95 -1.62 -66.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719887349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.742 kcal (2) G-P(sol) polarization free energy of solvation -64.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds