Wall clock time and date at job start Mon Mar 30 2020 02:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46826 * 2 1 4 4 O 1.42901 * 109.46960 * 119.99758 * 2 1 3 5 5 C 1.52998 * 109.47430 * 240.00145 * 2 1 3 6 6 H 1.09000 * 110.87619 * 61.62288 * 5 2 1 7 7 C 1.55139 * 110.99230 * 185.47240 * 5 2 1 8 8 C 1.54312 * 103.02030 * 153.74344 * 7 5 2 9 9 N 1.47453 * 107.23385 * 337.71656 * 8 7 5 10 10 C 1.46898 * 110.99995 * 236.74249 * 9 8 7 11 11 C 1.50706 * 109.46991 * 290.12241 * 10 9 8 12 12 H 1.07996 * 120.00020 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99889 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99828 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00029 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.46857 * 60.00338 * 15 13 11 17 17 H 1.48500 * 109.46858 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47021 * 300.00252 * 15 13 11 19 19 C 1.47843 * 108.56251 * 359.00946 * 9 8 7 20 20 H 1.09005 * 109.47649 * 60.00435 * 1 2 3 21 21 H 1.09003 * 109.47298 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47437 * 300.00043 * 1 2 3 23 23 H 1.09005 * 109.47044 * 54.97980 * 3 2 1 24 24 H 1.08995 * 109.46923 * 174.97809 * 3 2 1 25 25 H 1.08997 * 109.47106 * 294.97726 * 3 2 1 26 26 H 0.96692 * 114.00136 * 60.00651 * 4 2 1 27 27 H 1.08998 * 110.70117 * 272.12366 * 7 5 2 28 28 H 1.08998 * 110.70710 * 35.18433 * 7 5 2 29 29 H 1.08999 * 109.89141 * 97.12123 * 8 7 5 30 30 H 1.08994 * 109.89306 * 218.31314 * 8 7 5 31 31 H 1.08996 * 109.47397 * 50.12199 * 10 9 8 32 32 H 1.08995 * 109.46886 * 170.12466 * 10 9 8 33 33 H 0.97004 * 119.99849 * 179.97438 * 14 13 11 34 34 H 1.08996 * 110.37428 * 265.26420 * 19 9 8 35 35 H 1.09000 * 110.37089 * 142.92580 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 1 1.7132 -0.2089 -2.1541 7 6 3.5847 -0.8625 -1.2177 8 6 3.8374 -2.1117 -2.0876 9 7 2.5894 -2.8970 -2.0973 10 6 2.8243 -4.2648 -1.6157 11 6 3.6361 -5.0234 -2.6339 12 1 3.9467 -4.5378 -3.5472 13 6 3.9830 -6.3369 -2.3991 14 7 3.6050 -6.9280 -1.2867 15 14 4.9898 -7.2770 -3.6608 16 1 6.2920 -6.5929 -3.8641 17 1 5.2271 -8.6597 -3.1740 18 1 4.2500 -7.3259 -4.9476 19 6 1.5904 -2.2035 -1.2566 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.6049 1.9817 0.8416 24 1 3.1261 1.4439 0.0900 25 1 1.7519 1.9297 -0.9315 26 1 1.7210 -1.5951 1.2329 27 1 4.0608 0.0148 -1.6555 28 1 3.9363 -1.0218 -0.1983 29 1 4.0939 -1.8107 -3.1032 30 1 4.6452 -2.7048 -1.6591 31 1 3.3675 -4.2293 -0.6714 32 1 1.8683 -4.7665 -1.4663 33 1 3.8488 -7.8523 -1.1216 34 1 1.5997 -2.6080 -0.2445 35 1 0.5963 -2.2963 -1.6940 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721830722.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:39 Heat of formation + Delta-G solvation = -82.987142 kcal Electronic energy + Delta-G solvation = -14939.224692 eV Core-core repulsion = 12549.594512 eV Total energy + Delta-G solvation = -2389.630180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74471 -37.97239 -35.06568 -33.61249 -31.74830 -29.90964 -28.12131 -27.93601 -24.51481 -22.94266 -21.46285 -20.68772 -18.44346 -17.82947 -17.01510 -16.61266 -16.04621 -15.52483 -14.92633 -14.64579 -14.33230 -14.11572 -13.65574 -13.46708 -13.10724 -13.00835 -12.91261 -12.74555 -12.53130 -12.44887 -12.29438 -12.07204 -11.84438 -11.56864 -11.34694 -11.17607 -10.75371 -10.62962 -9.01953 -8.22539 -6.33423 1.39312 1.42935 1.51032 2.39020 3.09394 3.25999 3.38785 3.59713 3.79672 3.99440 4.14547 4.31400 4.36290 4.43683 4.64988 4.79684 4.82631 4.88455 4.93692 4.98473 5.03255 5.08053 5.11271 5.15000 5.24005 5.30379 5.38081 5.47210 5.64013 6.03310 6.31094 6.58503 6.74367 6.82566 7.36740 8.88219 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060391 B = 0.006827 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.532575 B = 4100.270367 C = 4258.513597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.133 3.867 3 C -0.135 4.135 4 O -0.576 6.576 5 C -0.108 4.108 6 H 0.101 0.899 7 C -0.123 4.123 8 C 0.051 3.949 9 N -0.540 5.540 10 C 0.206 3.794 11 C -0.527 4.527 12 H 0.059 0.941 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.971 3.029 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.267 1.267 19 C 0.043 3.957 20 H 0.080 0.920 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.377 0.623 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.028 0.972 31 H -0.037 1.037 32 H 0.001 0.999 33 H 0.265 0.735 34 H 0.030 0.970 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 14.985 1.270 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.092 3.908 3 C -0.192 4.192 4 O -0.384 6.384 5 C -0.128 4.128 6 H 0.119 0.881 7 C -0.161 4.161 8 C -0.077 4.077 9 N -0.265 5.265 10 C 0.080 3.920 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.795 3.205 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.192 1.192 19 C -0.084 4.084 20 H 0.099 0.901 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.227 0.773 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.046 0.954 31 H -0.020 1.020 32 H 0.019 0.981 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.039 15.345 0.961 15.897 hybrid contribution 0.524 -1.648 0.365 1.768 sum -3.515 13.697 1.326 14.203 Atomic orbital electron populations 1.22460 0.94500 1.02693 1.03518 1.21238 0.93408 0.93003 0.83106 1.21761 1.01664 0.92415 1.03350 1.86483 1.77936 1.29487 1.44510 1.22966 0.95294 0.94636 0.99863 0.88110 1.22710 0.96144 0.97604 0.99628 1.22656 0.91764 0.93650 0.99630 1.63559 1.09006 1.02698 1.51209 1.19510 0.94268 0.85518 0.92727 1.21442 1.33301 0.97011 1.04817 0.92263 1.25946 0.97416 0.98603 0.97764 1.70077 1.47610 1.13153 1.26660 0.85412 0.78981 0.77230 0.78856 1.19289 1.20602 1.19239 1.23097 0.96781 0.93640 0.94922 0.90060 0.92690 0.91348 0.91564 0.92504 0.89302 0.77313 0.89107 0.92087 0.91387 0.95351 1.01950 0.98122 0.92604 0.95212 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 8.62 71.98 0.62 -2.78 16 2 C 0.13 3.09 0.87 -10.79 -0.01 3.08 16 3 C -0.13 -2.59 8.61 71.98 0.62 -1.97 16 4 O -0.58 -16.05 11.93 -148.98 -1.78 -17.83 16 5 C -0.11 -2.96 2.42 -9.41 -0.02 -2.98 16 6 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 7 C -0.12 -3.75 5.57 31.77 0.18 -3.57 16 8 C 0.05 2.03 6.39 86.64 0.55 2.59 16 9 N -0.54 -24.16 5.15 -890.12 -4.58 -28.74 16 10 C 0.21 11.39 4.30 85.56 0.37 11.76 16 11 C -0.53 -30.96 8.67 25.60 0.22 -30.74 16 12 H 0.06 3.43 7.78 -2.91 -0.02 3.40 16 13 C 0.00 0.04 5.46 84.65 0.46 0.50 16 14 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 15 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 19 C 0.04 1.52 5.10 86.77 0.44 1.96 16 20 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 21 H 0.05 1.15 7.30 -2.39 -0.02 1.13 16 22 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.06 1.18 7.64 -2.39 -0.02 1.16 16 25 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 26 H 0.38 10.06 7.04 -74.06 -0.52 9.54 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 2.02 7.21 -2.39 -0.02 2.00 16 29 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.03 1.28 7.31 -2.39 -0.02 1.27 16 31 H -0.04 -2.22 7.96 -2.39 -0.02 -2.24 16 32 H 0.00 0.04 8.07 -2.39 -0.02 0.02 16 33 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.03 1.07 5.80 -2.39 -0.01 1.06 16 35 H 0.08 2.53 8.04 -2.39 -0.02 2.51 16 Total: -1.00 -66.39 276.69 -0.09 -66.48 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.53 Total: 12.15 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 3.43 Total: -22.15 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -4.30 Total: -85.79 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -1.78 Total: -17.83 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -66.39 -0.09 -66.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721830722.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.512 kcal (2) G-P(sol) polarization free energy of solvation -66.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds