Wall clock time and date at job start Mon Mar 30 2020 03:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47155 * 2 1 4 4 H 1.08997 * 109.47468 * 305.63411 * 3 2 1 5 5 C 1.50691 * 109.47335 * 185.63182 * 3 2 1 6 6 H 1.08003 * 120.00573 * 239.73165 * 5 3 2 7 7 C 1.37882 * 120.00122 * 59.99705 * 5 3 2 8 8 N 1.31510 * 119.99699 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00041 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47311 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47009 * 120.00486 * 9 7 5 12 12 H 1.48499 * 109.47196 * 240.00196 * 9 7 5 13 13 N 1.46908 * 109.46975 * 65.62997 * 3 2 1 14 14 C 1.46895 * 111.00131 * 204.81383 * 13 3 2 15 15 H 1.09006 * 112.85027 * 337.33450 * 14 13 3 16 16 C 1.53780 * 113.61473 * 108.53307 * 14 13 3 17 17 C 1.53781 * 87.08074 * 139.98378 * 16 14 13 18 18 C 1.53781 * 113.61355 * 206.14231 * 14 13 3 19 19 H 1.08996 * 113.61318 * 334.56282 * 18 14 13 20 20 O 1.42906 * 113.61515 * 105.47118 * 18 14 13 21 21 C 1.42897 * 113.99838 * 209.99610 * 20 18 14 22 22 H 1.09000 * 109.47258 * 173.04683 * 1 2 3 23 23 H 1.09000 * 109.46596 * 293.04474 * 1 2 3 24 24 H 1.08994 * 109.47300 * 53.04519 * 1 2 3 25 25 H 1.09000 * 109.47005 * 240.00256 * 2 1 3 26 26 H 1.08994 * 109.47213 * 120.00166 * 2 1 3 27 27 H 0.97002 * 120.00166 * 179.97438 * 8 7 5 28 28 H 1.00902 * 111.00055 * 328.77239 * 13 3 2 29 29 H 1.09004 * 113.61295 * 254.52825 * 16 14 13 30 30 H 1.08999 * 113.61427 * 25.34968 * 16 14 13 31 31 H 1.08999 * 113.61736 * 89.11553 * 17 16 14 32 32 H 1.08998 * 113.61014 * 220.02232 * 17 16 14 33 33 H 1.08997 * 109.47399 * 300.00526 * 21 20 18 34 34 H 1.09001 * 109.46956 * 59.99769 * 21 20 18 35 35 H 1.08994 * 109.47269 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5967 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1394 6 1 4.1537 1.8904 0.6299 7 6 4.1304 0.8829 -1.2518 8 7 3.3835 0.3454 -2.1914 9 14 5.9904 0.8852 -1.4243 10 1 6.5966 1.5450 -0.2401 11 1 6.4807 -0.5136 -1.5161 12 1 6.3726 1.6254 -2.6536 13 7 1.6645 2.0946 1.2617 14 6 1.5882 3.5525 1.0984 15 1 2.1755 3.9153 0.2547 16 6 0.1522 4.1017 1.1309 17 6 0.7043 5.2772 1.9545 18 6 1.8346 4.3319 2.4009 19 1 1.5989 3.7640 3.3008 20 8 3.1174 4.9591 2.4588 21 6 3.6433 5.0857 3.7815 22 1 -0.3634 -1.0201 -0.1244 23 1 -0.3632 0.4023 0.9457 24 1 -0.3633 0.6178 -0.8212 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.7985 -0.0495 -2.9742 28 1 0.7950 1.7244 1.6153 29 1 -0.2256 4.3945 0.1512 30 1 -0.5446 3.4700 1.6818 31 1 1.0503 6.1125 1.3458 32 1 0.0472 5.5876 2.7669 33 1 2.9640 5.6861 4.3866 34 1 3.7484 4.0964 4.2269 35 1 4.6185 5.5705 3.7399 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724202963.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:24 Heat of formation + Delta-G solvation = -51.530714 kcal Electronic energy + Delta-G solvation = -14904.850456 eV Core-core repulsion = 12516.584329 eV Total energy + Delta-G solvation = -2388.266127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.46086 -37.83794 -36.43967 -33.93615 -31.81578 -28.48300 -27.83264 -25.34867 -25.23819 -23.95602 -21.58078 -20.52342 -18.35874 -17.82957 -16.96898 -16.66893 -15.91993 -15.70146 -15.44593 -14.71580 -14.41584 -13.88354 -13.75409 -13.44254 -13.14409 -13.03218 -12.80216 -12.54085 -12.48594 -12.30245 -11.94984 -11.92802 -11.69386 -11.49853 -11.12388 -10.96359 -10.44451 -10.25176 -8.92456 -8.06561 -6.17878 1.37826 1.39552 1.52439 2.43762 2.98922 3.18022 3.65975 3.74112 3.85584 4.10139 4.17548 4.47014 4.52506 4.58985 4.60440 4.64320 4.70799 4.82037 4.86075 4.90710 5.02037 5.10251 5.23054 5.25223 5.35813 5.40487 5.62940 5.76915 5.92326 6.37806 6.45674 6.54929 6.96431 7.06340 7.51076 8.96328 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023836 B = 0.010777 C = 0.008102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.434389 B = 2597.507874 C = 3455.288459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.227 3.773 4 H -0.032 1.032 5 C -0.508 4.508 6 H 0.042 0.958 7 C 0.009 3.991 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.277 1.277 12 H -0.281 1.281 13 N -0.678 5.678 14 C 0.065 3.935 15 H 0.060 0.940 16 C -0.157 4.157 17 C -0.137 4.137 18 C 0.071 3.929 19 H 0.096 0.904 20 O -0.407 6.407 21 C 0.028 3.972 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.036 0.964 25 H 0.066 0.934 26 H 0.036 0.964 27 H 0.260 0.740 28 H 0.332 0.668 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 6.708 9.410 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.119 3.881 4 H -0.014 1.014 5 C -0.547 4.547 6 H 0.060 0.940 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.207 1.207 13 N -0.309 5.309 14 C -0.046 4.046 15 H 0.078 0.922 16 C -0.196 4.196 17 C -0.175 4.175 18 C 0.013 3.987 19 H 0.114 0.886 20 O -0.326 6.326 21 C -0.068 4.068 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.152 0.848 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.302 6.669 9.320 12.627 hybrid contribution 0.340 -0.169 -0.815 0.899 sum -4.962 6.499 8.505 11.799 Atomic orbital electron populations 1.21736 0.95969 1.01119 1.00668 1.21594 0.94490 0.98814 1.01147 1.18917 0.93711 0.90677 0.84768 1.01446 1.21497 0.93121 1.35976 1.04104 0.93951 1.25650 1.02156 0.95478 0.95603 1.69998 1.35988 1.40157 1.09822 0.85589 0.81101 0.77755 0.77683 1.19957 1.20242 1.20694 1.60424 1.36485 1.02964 1.31052 1.23305 0.95759 0.88347 0.97204 0.92177 1.23373 0.96274 0.98872 1.01118 1.23218 0.96999 0.96778 1.00506 1.24185 0.82590 0.93643 0.98320 0.88636 1.87923 1.35362 1.80019 1.29262 1.22891 0.99698 1.00602 0.83635 0.92458 0.92065 0.94459 0.91512 0.94536 0.93087 0.84819 0.91301 0.88217 0.90014 0.88473 0.92246 0.94357 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.62 71.98 0.69 -4.42 16 2 C -0.12 -5.83 5.36 30.60 0.16 -5.67 16 3 C 0.23 11.76 1.87 44.16 0.08 11.84 16 4 H -0.03 -1.84 7.83 -2.39 -0.02 -1.86 16 5 C -0.51 -29.70 8.66 25.60 0.22 -29.48 16 6 H 0.04 2.59 7.81 -2.91 -0.02 2.56 16 7 C 0.01 0.52 5.29 84.66 0.45 0.97 16 8 N -0.92 -54.25 11.29 21.45 0.24 -54.01 16 9 Si 0.95 46.12 29.54 68.60 2.03 48.15 16 10 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 N -0.68 -29.17 6.42 -470.62 -3.02 -32.19 16 14 C 0.07 2.55 3.74 45.44 0.17 2.72 16 15 H 0.06 2.87 7.79 -2.38 -0.02 2.85 16 16 C -0.16 -4.55 7.69 31.12 0.24 -4.31 16 17 C -0.14 -3.55 7.92 31.18 0.25 -3.30 16 18 C 0.07 2.31 4.12 31.18 0.13 2.44 16 19 H 0.10 2.83 7.87 -2.39 -0.02 2.81 16 20 O -0.41 -14.62 10.72 -148.98 -1.60 -16.21 16 21 C 0.03 0.73 10.85 113.37 1.23 1.96 16 22 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.06 1.94 6.70 -2.39 -0.02 1.92 16 24 H 0.04 1.41 8.13 -2.39 -0.02 1.39 16 25 H 0.07 3.65 5.94 -2.39 -0.01 3.63 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.33 12.31 6.07 -89.69 -0.54 11.77 16 29 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.10 2.47 7.82 -2.39 -0.02 2.45 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.10 1.91 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -65.44 283.82 1.78 -63.66 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.50 Total: 17.83 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 3.62 Total: -27.24 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -2.78 Total: -86.19 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -1.60 Total: -16.21 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -65.44 1.78 -63.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724202963.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.134 kcal (2) G-P(sol) polarization free energy of solvation -65.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds