Wall clock time and date at job start Mon Mar 30 2020 04:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47266 * 2 1 4 4 O 1.42904 * 109.47105 * 180.02562 * 3 2 1 5 5 C 1.42893 * 113.99995 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.50014 * 330.00113 * 5 4 3 7 7 C 1.53037 * 109.49809 * 209.93741 * 5 4 3 8 8 C 1.53044 * 109.53660 * 178.68358 * 7 5 4 9 9 C 1.53191 * 109.31730 * 61.36293 * 8 7 5 10 10 N 1.46921 * 108.77254 * 305.36759 * 9 8 7 11 11 C 1.36936 * 120.62670 * 233.60439 * 10 9 8 12 12 H 1.08008 * 119.99722 * 151.84415 * 11 10 9 13 13 C 1.38813 * 120.00183 * 331.84340 * 11 10 9 14 14 N 1.31614 * 120.00093 * 343.07167 * 13 11 10 15 15 Si 1.86807 * 119.99805 * 163.06895 * 13 11 10 16 16 H 1.48496 * 109.46833 * 90.00249 * 15 13 11 17 17 H 1.48506 * 109.46941 * 210.00074 * 15 13 11 18 18 H 1.48496 * 109.47046 * 329.99731 * 15 13 11 19 19 C 1.46931 * 118.76978 * 53.58445 * 10 9 8 20 20 H 1.08996 * 109.47589 * 59.99471 * 1 2 3 21 21 H 1.09007 * 109.47584 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47272 * 299.99643 * 1 2 3 23 23 H 1.09002 * 109.47272 * 240.00357 * 2 1 3 24 24 H 1.09004 * 109.47334 * 120.00669 * 2 1 3 25 25 H 1.09000 * 109.46865 * 60.00504 * 3 2 1 26 26 H 1.08991 * 109.47482 * 300.00324 * 3 2 1 27 27 H 1.09003 * 109.45946 * 298.70130 * 7 5 4 28 28 H 1.08992 * 109.46356 * 58.67678 * 7 5 4 29 29 H 1.09008 * 109.49856 * 181.31590 * 8 7 5 30 30 H 1.09003 * 109.50097 * 301.40825 * 8 7 5 31 31 H 1.09008 * 109.58356 * 65.14805 * 9 8 7 32 32 H 1.09000 * 109.58927 * 185.43320 * 9 8 7 33 33 H 0.96994 * 120.00064 * 179.97438 * 14 13 11 34 34 H 1.08992 * 109.61899 * 186.64037 * 19 10 9 35 35 H 1.09006 * 109.56069 * 66.21355 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0502 2.7478 -0.0001 6 1 3.3851 3.4425 -0.5131 7 6 5.3997 2.7064 -0.7206 8 6 6.0079 4.1105 -0.7493 9 6 6.2409 4.5913 0.6864 10 7 4.9761 4.4966 1.4279 11 6 4.4733 5.5838 2.0913 12 1 3.4076 5.6820 2.2373 13 6 5.3331 6.5598 2.5762 14 7 6.6173 6.3013 2.7034 15 14 4.6674 8.2403 3.0480 16 1 4.2702 8.2313 4.4789 17 1 5.7181 9.2673 2.8323 18 1 3.4848 8.5579 2.2079 19 6 4.2603 3.2135 1.4442 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9564 -0.8899 27 1 6.0724 2.0300 -0.1931 28 1 5.2557 2.3524 -1.7413 29 1 6.9580 4.0846 -1.2830 30 1 5.3246 4.7928 -1.2550 31 1 6.9927 3.9632 1.1646 32 1 6.5833 5.6260 0.6743 33 1 7.2181 6.9834 3.0418 34 1 3.2937 3.3399 1.9316 35 1 4.8503 2.4732 1.9846 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042422218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:55 Heat of formation + Delta-G solvation = -45.612683 kcal Electronic energy + Delta-G solvation = -14768.007902 eV Core-core repulsion = 12379.998400 eV Total energy + Delta-G solvation = -2388.009502 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.45922 -36.27375 -33.66178 -32.50719 -30.43843 -28.81533 -25.82865 -25.21235 -22.08373 -21.70820 -21.34330 -19.11786 -16.88427 -15.95858 -15.63839 -14.93849 -14.53596 -13.99636 -13.69620 -13.30300 -12.85497 -12.64967 -12.42280 -12.15807 -11.79445 -11.66694 -11.20637 -10.99130 -10.89034 -10.68959 -10.59854 -10.19205 -10.15827 -9.84269 -9.74969 -9.64047 -8.98214 -8.42709 -6.65537 -5.78515 -3.21521 3.37403 3.44163 3.46602 3.99005 4.51285 5.01239 5.09268 5.32626 5.37377 5.53687 5.54401 5.58450 5.67405 5.71267 5.80469 5.91638 5.95857 6.03623 6.16232 6.21603 6.29961 6.40265 6.59977 6.71300 6.80847 6.86488 6.90477 7.38625 7.67550 7.72516 7.80902 8.45714 9.21571 9.84535 10.41661 11.30073 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036554 B = 0.007619 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.810773 B = 3674.024142 C = 4228.780685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.063 3.937 4 O -0.391 6.391 5 C 0.074 3.926 6 H 0.054 0.946 7 C -0.104 4.104 8 C -0.140 4.140 9 C 0.168 3.832 10 N -0.589 5.589 11 C -0.254 4.254 12 H 0.064 0.936 13 C 0.003 3.997 14 N -0.902 5.902 15 Si 0.902 3.098 16 H -0.287 1.287 17 H -0.289 1.289 18 H -0.279 1.279 19 C 0.131 3.869 20 H 0.054 0.946 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.088 0.912 33 H 0.254 0.746 34 H 0.051 0.949 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.030 -8.219 -6.476 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.014 4.014 4 O -0.310 6.310 5 C 0.015 3.985 6 H 0.072 0.928 7 C -0.142 4.142 8 C -0.180 4.180 9 C 0.042 3.958 10 N -0.313 5.313 11 C -0.384 4.384 12 H 0.082 0.918 13 C -0.195 4.195 14 N -0.546 5.546 15 Si 0.732 3.268 16 H -0.214 1.214 17 H -0.215 1.215 18 H -0.205 1.205 19 C 0.004 3.996 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.795 -8.274 -6.404 12.476 hybrid contribution -0.432 1.115 0.299 1.232 sum -7.226 -7.160 -6.105 11.864 Atomic orbital electron populations 1.21695 0.95189 1.01781 1.02004 1.21452 0.95337 0.96241 1.02982 1.22476 0.82162 0.96907 0.99877 1.87818 1.18590 1.29302 1.95248 1.22786 0.94267 0.82638 0.98844 0.92767 1.21461 0.95569 0.98271 0.98852 1.22205 0.99263 0.95129 1.01379 1.20828 0.87172 1.01619 0.86143 1.44000 1.23746 1.06024 1.57575 1.19166 0.91291 0.97971 1.29974 0.91782 1.25042 0.95841 0.99872 0.98775 1.70037 1.02921 1.33013 1.48629 0.86301 0.78013 0.84146 0.78345 1.21351 1.21483 1.20496 1.21299 0.96444 0.89000 0.92856 0.92700 0.92370 0.92503 0.91520 0.91258 0.93469 0.94014 0.91983 0.93209 0.92656 0.92705 0.96241 0.89380 0.93593 0.93067 0.95686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.15 0.37 -1.06 16 2 C -0.12 -1.46 6.30 -26.73 -0.17 -1.62 16 3 C 0.06 0.92 5.75 37.16 0.21 1.13 16 4 O -0.39 -7.02 9.99 -35.23 -0.35 -7.37 16 5 C 0.07 1.43 2.76 -26.61 -0.07 1.36 16 6 H 0.05 1.06 7.79 -51.92 -0.40 0.66 16 7 C -0.10 -1.93 5.54 -26.69 -0.15 -2.08 16 8 C -0.14 -2.78 6.08 -26.61 -0.16 -2.94 16 9 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 10 N -0.59 -15.29 2.99 -172.31 -0.52 -15.81 16 11 C -0.25 -7.13 9.58 -15.06 -0.14 -7.27 16 12 H 0.06 1.76 7.89 -52.48 -0.41 1.34 16 13 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 14 N -0.90 -26.45 11.19 55.49 0.62 -25.83 16 15 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 C 0.13 2.95 6.14 -3.71 -0.02 2.93 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.70 8.03 -51.93 -0.42 0.28 16 26 H 0.04 0.58 8.08 -51.93 -0.42 0.16 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 33 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.05 1.13 7.82 -51.93 -0.41 0.73 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 280.91 15.07 4.23 4.23 Total: -1.00 -29.64 280.91 -7.45 -37.09 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -6.16 Total: -3.63 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -0.24 Total: -5.44 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.11 Total: -41.64 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.35 Total: -7.37 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.64 -7.45 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042422218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.522 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds