Wall clock time and date at job start Mon Mar 30 2020 04:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47266 * 2 1 4 4 O 1.42904 * 109.47105 * 180.02562 * 3 2 1 5 5 C 1.42893 * 113.99995 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.50014 * 330.00113 * 5 4 3 7 7 C 1.53037 * 109.49809 * 209.93741 * 5 4 3 8 8 C 1.53044 * 109.53660 * 178.68358 * 7 5 4 9 9 C 1.53191 * 109.31730 * 61.36293 * 8 7 5 10 10 N 1.46921 * 108.77254 * 305.36759 * 9 8 7 11 11 C 1.36936 * 120.62670 * 233.60439 * 10 9 8 12 12 H 1.08008 * 119.99722 * 151.84415 * 11 10 9 13 13 C 1.38813 * 120.00183 * 331.84340 * 11 10 9 14 14 N 1.31614 * 120.00093 * 343.07167 * 13 11 10 15 15 Si 1.86807 * 119.99805 * 163.06895 * 13 11 10 16 16 H 1.48496 * 109.46833 * 90.00249 * 15 13 11 17 17 H 1.48506 * 109.46941 * 210.00074 * 15 13 11 18 18 H 1.48496 * 109.47046 * 329.99731 * 15 13 11 19 19 C 1.46931 * 118.76978 * 53.58445 * 10 9 8 20 20 H 1.08996 * 109.47589 * 59.99471 * 1 2 3 21 21 H 1.09007 * 109.47584 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47272 * 299.99643 * 1 2 3 23 23 H 1.09002 * 109.47272 * 240.00357 * 2 1 3 24 24 H 1.09004 * 109.47334 * 120.00669 * 2 1 3 25 25 H 1.09000 * 109.46865 * 60.00504 * 3 2 1 26 26 H 1.08991 * 109.47482 * 300.00324 * 3 2 1 27 27 H 1.09003 * 109.45946 * 298.70130 * 7 5 4 28 28 H 1.08992 * 109.46356 * 58.67678 * 7 5 4 29 29 H 1.09008 * 109.49856 * 181.31590 * 8 7 5 30 30 H 1.09003 * 109.50097 * 301.40825 * 8 7 5 31 31 H 1.09008 * 109.58356 * 65.14805 * 9 8 7 32 32 H 1.09000 * 109.58927 * 185.43320 * 9 8 7 33 33 H 0.96994 * 120.00064 * 179.97438 * 14 13 11 34 34 H 1.08992 * 109.61899 * 186.64037 * 19 10 9 35 35 H 1.09006 * 109.56069 * 66.21355 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0502 2.7478 -0.0001 6 1 3.3851 3.4425 -0.5131 7 6 5.3997 2.7064 -0.7206 8 6 6.0079 4.1105 -0.7493 9 6 6.2409 4.5913 0.6864 10 7 4.9761 4.4966 1.4279 11 6 4.4733 5.5838 2.0913 12 1 3.4076 5.6820 2.2373 13 6 5.3331 6.5598 2.5762 14 7 6.6173 6.3013 2.7034 15 14 4.6674 8.2403 3.0480 16 1 4.2702 8.2313 4.4789 17 1 5.7181 9.2673 2.8323 18 1 3.4848 8.5579 2.2079 19 6 4.2603 3.2135 1.4442 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9564 -0.8899 27 1 6.0724 2.0300 -0.1931 28 1 5.2557 2.3524 -1.7413 29 1 6.9580 4.0846 -1.2830 30 1 5.3246 4.7928 -1.2550 31 1 6.9927 3.9632 1.1646 32 1 6.5833 5.6260 0.6743 33 1 7.2181 6.9834 3.0418 34 1 3.2937 3.3399 1.9316 35 1 4.8503 2.4732 1.9846 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042422218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:54 Heat of formation + Delta-G solvation = -63.092158 kcal Electronic energy + Delta-G solvation = -14768.765869 eV Core-core repulsion = 12379.998400 eV Total energy + Delta-G solvation = -2388.767469 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.00973 -37.88865 -35.05409 -34.08108 -32.36841 -30.50289 -27.31515 -26.82563 -23.87409 -23.41685 -22.40815 -20.83400 -18.80072 -17.50854 -16.89278 -16.76420 -16.13504 -15.52114 -15.31690 -15.00647 -14.34851 -14.20406 -13.81460 -13.63071 -13.14377 -13.04663 -12.83543 -12.67615 -12.54570 -12.12322 -12.00587 -11.85383 -11.77288 -11.60615 -11.45780 -11.29238 -10.66510 -10.37214 -8.72160 -7.90798 -5.38167 1.45985 1.47235 1.57551 2.45842 2.70600 3.24274 3.70769 3.91524 4.02101 4.11527 4.18977 4.28682 4.39075 4.42925 4.50706 4.63686 4.68841 4.74958 4.88405 4.97883 5.04478 5.08383 5.14507 5.19225 5.24720 5.27849 5.38782 5.48224 5.60898 5.71422 6.28319 6.40840 7.10732 7.79574 8.32479 9.15844 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036554 B = 0.007619 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.810773 B = 3674.024142 C = 4228.780685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C 0.054 3.946 4 O -0.398 6.398 5 C 0.087 3.913 6 H 0.056 0.944 7 C -0.100 4.100 8 C -0.127 4.127 9 C 0.171 3.829 10 N -0.607 5.607 11 C -0.271 4.271 12 H 0.065 0.935 13 C -0.047 4.047 14 N -0.934 5.934 15 Si 0.971 3.029 16 H -0.284 1.284 17 H -0.289 1.289 18 H -0.269 1.269 19 C 0.130 3.870 20 H 0.061 0.939 21 H 0.074 0.926 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.056 0.944 31 H -0.004 1.004 32 H 0.058 0.942 33 H 0.252 0.748 34 H 0.048 0.952 35 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.312 -8.599 -7.720 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.023 4.023 4 O -0.317 6.317 5 C 0.027 3.973 6 H 0.074 0.926 7 C -0.137 4.137 8 C -0.166 4.166 9 C 0.046 3.954 10 N -0.332 5.332 11 C -0.401 4.401 12 H 0.083 0.917 13 C -0.243 4.243 14 N -0.579 5.579 15 Si 0.798 3.202 16 H -0.210 1.210 17 H -0.215 1.215 18 H -0.194 1.194 19 C 0.004 3.996 20 H 0.080 0.920 21 H 0.093 0.907 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.014 0.986 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -8.099 -8.680 -7.660 14.129 hybrid contribution -0.058 1.162 0.729 1.373 sum -8.157 -7.518 -6.932 13.081 Atomic orbital electron populations 1.21682 0.93254 1.03011 1.02327 1.21459 0.96909 0.94210 1.03000 1.22762 0.80391 0.99005 1.00118 1.87818 1.20638 1.28114 1.95141 1.22465 0.95116 0.83430 0.96243 0.92571 1.21426 0.94688 0.97212 1.00390 1.22026 1.00876 0.95802 0.97929 1.20701 0.86247 0.99560 0.88897 1.44255 1.24244 1.06752 1.57916 1.19503 0.91565 0.98964 1.30048 0.91703 1.25844 0.96084 1.03314 0.99061 1.70192 1.04110 1.33945 1.49694 0.85238 0.77508 0.79442 0.78008 1.21048 1.21496 1.19421 1.21377 0.95509 0.87420 0.95308 0.91971 0.90718 0.92614 0.90967 0.91803 0.94147 0.92832 0.92501 0.90158 0.90007 0.92497 0.98562 0.92322 0.93886 0.93388 0.97240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 71.98 0.71 -1.70 16 2 C -0.12 -2.57 6.30 30.59 0.19 -2.37 16 3 C 0.05 1.48 5.75 71.98 0.41 1.89 16 4 O -0.40 -13.66 9.99 -148.98 -1.49 -15.15 16 5 C 0.09 3.25 2.76 30.67 0.08 3.34 16 6 H 0.06 2.10 7.79 -2.38 -0.02 2.08 16 7 C -0.10 -3.49 5.54 30.62 0.17 -3.32 16 8 C -0.13 -4.85 6.08 30.67 0.19 -4.67 16 9 C 0.17 8.53 5.30 86.36 0.46 8.98 16 10 N -0.61 -31.92 2.99 -699.08 -2.09 -34.01 16 11 C -0.27 -15.33 9.58 84.03 0.81 -14.53 16 12 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 13 C -0.05 -2.68 4.92 84.86 0.42 -2.27 16 14 N -0.93 -55.97 11.19 21.65 0.24 -55.73 16 15 Si 0.97 45.05 29.59 68.60 2.03 47.08 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 17 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 C 0.13 5.91 6.14 86.36 0.53 6.44 16 20 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 21 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 22 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.04 1.16 8.03 -2.39 -0.02 1.14 16 26 H 0.05 1.36 8.08 -2.39 -0.02 1.34 16 27 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 32 H 0.06 3.25 6.06 -2.39 -0.01 3.23 16 33 H 0.25 14.52 8.31 -92.71 -0.77 13.74 16 34 H 0.05 2.15 7.82 -2.39 -0.02 2.13 16 35 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 Total: -1.00 -63.43 280.91 3.69 -59.74 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 1.02 Total: 6.27 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 3.97 Total: -8.21 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -1.85 Total: -89.74 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -1.49 Total: -15.15 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -63.43 3.69 -59.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042422218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.352 kcal (2) G-P(sol) polarization free energy of solvation -63.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds