Wall clock time and date at job start Mon Mar 30 2020 02:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47347 * 2 1 4 4 H 1.09000 * 109.47692 * 54.99718 * 3 2 1 5 5 O 1.42903 * 109.47248 * 295.00073 * 3 2 1 6 6 C 1.53001 * 109.47252 * 175.00003 * 3 2 1 7 7 N 1.46907 * 109.47262 * 184.99765 * 6 3 2 8 8 C 1.46901 * 110.99735 * 189.99885 * 7 6 3 9 9 C 1.50697 * 109.46714 * 159.86790 * 8 7 6 10 10 H 1.08003 * 120.00127 * 354.19680 * 9 8 7 11 11 C 1.37877 * 120.00268 * 174.19943 * 9 8 7 12 12 N 1.31519 * 119.99478 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00334 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47305 * 59.99691 * 13 11 9 15 15 H 1.48503 * 109.47171 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47260 * 299.99578 * 13 11 9 17 17 C 1.46896 * 110.99861 * 66.04798 * 7 6 3 18 18 C 1.53007 * 117.49804 * 262.03363 * 17 7 6 19 19 C 1.53000 * 117.49939 * 193.37362 * 17 7 6 20 20 H 1.08998 * 109.47686 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46766 * 299.99986 * 1 2 3 22 22 H 1.08995 * 109.47006 * 60.00198 * 1 2 3 23 23 H 1.09008 * 109.47087 * 120.00134 * 2 1 3 24 24 H 1.08996 * 109.46862 * 239.99590 * 2 1 3 25 25 H 0.96705 * 113.99501 * 299.99659 * 5 3 2 26 26 H 1.08994 * 109.47062 * 305.00081 * 6 3 2 27 27 H 1.09005 * 109.47366 * 64.99962 * 6 3 2 28 28 H 1.09000 * 109.46973 * 279.86272 * 8 7 6 29 29 H 1.08997 * 109.47005 * 39.86763 * 8 7 6 30 30 H 0.97002 * 119.99787 * 180.02562 * 12 11 9 31 31 H 1.09005 * 115.55089 * 47.69871 * 17 7 6 32 32 H 1.08996 * 117.49537 * 359.97438 * 18 17 7 33 33 H 1.09001 * 117.49977 * 145.01989 * 18 17 7 34 34 H 1.08997 * 117.49722 * 214.97676 * 19 17 7 35 35 H 1.09000 * 117.49736 * 359.97179 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6620 2.0813 -1.2211 6 6 3.5649 1.4442 0.1257 7 7 4.0447 2.8275 0.2461 8 6 5.5079 2.8890 0.1309 9 6 5.9244 4.2902 -0.2354 10 1 5.1752 5.0347 -0.4609 11 6 7.2618 4.6217 -0.2827 12 7 8.1741 3.7152 -0.0076 13 14 7.7781 6.3584 -0.7374 14 1 7.2052 7.3173 0.2410 15 1 9.2598 6.4560 -0.7159 16 1 7.2800 6.6826 -2.0983 17 6 3.5897 3.4349 1.5038 18 6 2.3471 4.3261 1.4489 19 6 3.7301 4.9517 1.6471 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 2.0143 1.6541 -2.0139 26 1 3.8571 0.8799 1.0113 27 1 4.0030 0.9834 -0.7597 28 1 5.9593 2.6132 1.0839 29 1 5.8408 2.1970 -0.6427 30 1 9.1151 3.9485 -0.0405 31 1 3.7355 2.8292 2.3982 32 1 1.8676 4.4619 0.4796 33 1 1.6757 4.3069 2.3074 34 1 3.9679 5.3439 2.6359 35 1 4.1605 5.4988 0.8083 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044415033.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:03 Heat of formation + Delta-G solvation = -30.023408 kcal Electronic energy + Delta-G solvation = -14841.415898 eV Core-core repulsion = 12454.082398 eV Total energy + Delta-G solvation = -2387.333500 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.37692 -36.54957 -33.45858 -32.61744 -32.13997 -28.46774 -25.97273 -22.84562 -22.24584 -21.55813 -20.88592 -19.36825 -16.66051 -15.81860 -15.57964 -14.87207 -14.60366 -14.30124 -14.10972 -13.47622 -12.91363 -12.36827 -12.12194 -11.96372 -11.81566 -11.29458 -11.20207 -10.91423 -10.86269 -10.71666 -10.57160 -10.42434 -9.99123 -9.54623 -9.45009 -9.10304 -8.97088 -8.35764 -7.19743 -5.97341 -3.96940 3.36480 3.40170 3.43412 4.42077 4.61476 4.66430 4.92484 5.06180 5.21879 5.30949 5.37619 5.64939 5.71427 5.74628 5.83180 5.89936 5.96885 5.99947 6.15115 6.24476 6.28570 6.29843 6.43590 6.57313 6.82630 7.10459 7.23671 7.41470 7.90254 8.07506 8.17779 8.27746 8.60071 9.09614 9.65627 11.13321 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.042619 B = 0.007801 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.823405 B = 3588.333066 C = 3849.887296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.158 4.158 3 C 0.112 3.888 4 H 0.097 0.903 5 O -0.548 6.548 6 C 0.028 3.972 7 N -0.500 5.500 8 C 0.195 3.805 9 C -0.495 4.495 10 H 0.067 0.933 11 C 0.053 3.947 12 N -0.903 5.903 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.277 1.277 17 C 0.023 3.977 18 C -0.184 4.184 19 C -0.155 4.155 20 H 0.047 0.953 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.367 0.633 26 H 0.027 0.973 27 H 0.069 0.931 28 H -0.004 1.004 29 H 0.022 0.978 30 H 0.260 0.740 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.542 -5.113 1.364 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.053 3.947 4 H 0.115 0.885 5 O -0.352 6.352 6 C -0.101 4.101 7 N -0.225 5.225 8 C 0.070 3.930 9 C -0.534 4.534 10 H 0.085 0.915 11 C -0.148 4.148 12 N -0.543 5.543 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.202 1.202 17 C -0.086 4.086 18 C -0.222 4.222 19 C -0.192 4.192 20 H 0.066 0.934 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.213 0.787 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.014 0.986 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.831 -4.466 1.400 12.723 hybrid contribution 1.233 -0.121 0.202 1.255 sum -10.598 -4.587 1.602 11.659 Atomic orbital electron populations 1.21674 0.95467 1.00828 1.02294 1.22261 0.96766 0.98263 1.02331 1.21959 0.93448 0.91138 0.88195 0.88470 1.86567 1.76057 1.57450 1.15128 1.22766 0.95401 0.91643 1.00334 1.61862 1.15232 1.14317 1.31050 1.19719 0.79731 0.97835 0.95688 1.21192 0.91281 0.95901 1.45001 0.91475 1.24988 0.96667 0.97301 0.95836 1.69953 1.00710 1.33600 1.50030 0.86608 0.77174 0.84819 0.79114 1.20231 1.21482 1.20227 1.22052 1.01465 0.93289 0.91799 1.23073 0.91072 1.05982 1.02034 1.23101 0.97915 0.95443 1.02788 0.93355 0.92960 0.92114 0.91555 0.91882 0.78708 0.95532 0.91238 0.98599 0.95994 0.93026 0.91740 0.88394 0.90540 0.90363 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.81 37.16 0.36 -1.21 16 2 C -0.16 -1.88 5.61 -26.74 -0.15 -2.03 16 3 C 0.11 1.68 2.84 -26.74 -0.08 1.60 16 4 H 0.10 1.54 6.29 -51.93 -0.33 1.22 16 5 O -0.55 -8.67 12.82 -35.23 -0.45 -9.12 16 6 C 0.03 0.49 4.58 -3.82 -0.02 0.48 16 7 N -0.50 -10.88 4.52 -228.08 -1.03 -11.91 16 8 C 0.19 5.10 4.77 -4.98 -0.02 5.08 16 9 C -0.50 -13.83 7.82 -34.44 -0.27 -14.10 16 10 H 0.07 1.87 5.78 -52.48 -0.30 1.56 16 11 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 12 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 13 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.02 0.47 4.18 -67.71 -0.28 0.18 16 18 C -0.18 -3.23 9.16 -26.69 -0.24 -3.48 16 19 C -0.16 -3.10 9.48 -26.69 -0.25 -3.35 16 20 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.68 7.82 -51.93 -0.41 0.28 16 23 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.37 4.74 9.05 45.56 0.41 5.15 16 26 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 27 H 0.07 1.23 7.83 -51.93 -0.41 0.82 16 28 H 0.00 -0.11 7.99 -51.93 -0.42 -0.53 16 29 H 0.02 0.61 7.73 -51.93 -0.40 0.21 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.12 2.62 5.45 -51.93 -0.28 2.34 16 LS Contribution 284.68 15.07 4.29 4.29 Total: -1.00 -30.19 284.68 -7.59 -37.78 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.07 Total: 3.85 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -1.05 Total: -15.43 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.29 Total: -38.14 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.45 Total: -9.12 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.19 -7.59 -37.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044415033.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.758 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds