Wall clock time and date at job start Mon Mar 30 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47347 * 2 1 4 4 H 1.09000 * 109.47692 * 54.99718 * 3 2 1 5 5 O 1.42903 * 109.47248 * 295.00073 * 3 2 1 6 6 C 1.53001 * 109.47252 * 175.00003 * 3 2 1 7 7 N 1.46907 * 109.47262 * 184.99765 * 6 3 2 8 8 C 1.46901 * 110.99735 * 189.99885 * 7 6 3 9 9 C 1.50697 * 109.46714 * 159.86790 * 8 7 6 10 10 H 1.08003 * 120.00127 * 354.19680 * 9 8 7 11 11 C 1.37877 * 120.00268 * 174.19943 * 9 8 7 12 12 N 1.31519 * 119.99478 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00334 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47305 * 59.99691 * 13 11 9 15 15 H 1.48503 * 109.47171 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47260 * 299.99578 * 13 11 9 17 17 C 1.46896 * 110.99861 * 66.04798 * 7 6 3 18 18 C 1.53007 * 117.49804 * 262.03363 * 17 7 6 19 19 C 1.53000 * 117.49939 * 193.37362 * 17 7 6 20 20 H 1.08998 * 109.47686 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46766 * 299.99986 * 1 2 3 22 22 H 1.08995 * 109.47006 * 60.00198 * 1 2 3 23 23 H 1.09008 * 109.47087 * 120.00134 * 2 1 3 24 24 H 1.08996 * 109.46862 * 239.99590 * 2 1 3 25 25 H 0.96705 * 113.99501 * 299.99659 * 5 3 2 26 26 H 1.08994 * 109.47062 * 305.00081 * 6 3 2 27 27 H 1.09005 * 109.47366 * 64.99962 * 6 3 2 28 28 H 1.09000 * 109.46973 * 279.86272 * 8 7 6 29 29 H 1.08997 * 109.47005 * 39.86763 * 8 7 6 30 30 H 0.97002 * 119.99787 * 180.02562 * 12 11 9 31 31 H 1.09005 * 115.55089 * 47.69871 * 17 7 6 32 32 H 1.08996 * 117.49537 * 359.97438 * 18 17 7 33 33 H 1.09001 * 117.49977 * 145.01989 * 18 17 7 34 34 H 1.08997 * 117.49722 * 214.97676 * 19 17 7 35 35 H 1.09000 * 117.49736 * 359.97179 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6620 2.0813 -1.2211 6 6 3.5649 1.4442 0.1257 7 7 4.0447 2.8275 0.2461 8 6 5.5079 2.8890 0.1309 9 6 5.9244 4.2902 -0.2354 10 1 5.1752 5.0347 -0.4609 11 6 7.2618 4.6217 -0.2827 12 7 8.1741 3.7152 -0.0076 13 14 7.7781 6.3584 -0.7374 14 1 7.2052 7.3173 0.2410 15 1 9.2598 6.4560 -0.7159 16 1 7.2800 6.6826 -2.0983 17 6 3.5897 3.4349 1.5038 18 6 2.3471 4.3261 1.4489 19 6 3.7301 4.9517 1.6471 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 2.0143 1.6541 -2.0139 26 1 3.8571 0.8799 1.0113 27 1 4.0030 0.9834 -0.7597 28 1 5.9593 2.6132 1.0839 29 1 5.8408 2.1970 -0.6427 30 1 9.1151 3.9485 -0.0405 31 1 3.7355 2.8292 2.3982 32 1 1.8676 4.4619 0.4796 33 1 1.6757 4.3069 2.3074 34 1 3.9679 5.3439 2.6359 35 1 4.1605 5.4988 0.8083 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044415033.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:01 Heat of formation + Delta-G solvation = -51.653415 kcal Electronic energy + Delta-G solvation = -14842.353846 eV Core-core repulsion = 12454.082398 eV Total energy + Delta-G solvation = -2388.271448 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.83969 -37.93213 -35.30559 -34.22221 -33.50088 -30.14619 -27.68581 -24.33762 -23.97420 -23.07064 -22.08056 -21.02324 -18.65071 -17.17608 -16.89929 -16.66809 -16.25973 -15.75289 -15.53378 -14.96799 -14.31928 -14.08912 -13.83433 -13.25684 -13.09499 -12.88786 -12.78106 -12.67725 -12.43369 -12.32614 -11.86294 -11.78101 -11.64934 -11.26554 -11.03552 -10.80035 -10.52908 -10.50692 -8.96199 -8.15498 -6.23146 1.41435 1.44137 1.51667 2.41972 3.03122 3.15536 3.20655 3.72052 3.84924 4.17464 4.19042 4.22995 4.33110 4.38378 4.57243 4.70327 4.74303 4.81001 4.91380 4.96650 5.02125 5.11765 5.12929 5.20393 5.37930 5.39872 5.45125 5.50457 5.77229 6.11574 6.43190 6.66399 6.91381 7.02677 7.44613 8.94855 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.042619 B = 0.007801 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.823405 B = 3588.333066 C = 3849.887296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.151 4.151 3 C 0.124 3.876 4 H 0.092 0.908 5 O -0.563 6.563 6 C 0.025 3.975 7 N -0.507 5.507 8 C 0.210 3.790 9 C -0.504 4.504 10 H 0.067 0.933 11 C 0.000 4.000 12 N -0.939 5.939 13 Si 0.962 3.038 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.270 1.270 17 C 0.002 3.998 18 C -0.144 4.144 19 C -0.171 4.171 20 H 0.065 0.935 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.379 0.621 26 H 0.028 0.972 27 H 0.065 0.935 28 H -0.037 1.037 29 H -0.002 1.002 30 H 0.262 0.738 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.145 -4.754 1.561 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.189 4.189 3 C 0.064 3.936 4 H 0.110 0.890 5 O -0.369 6.369 6 C -0.104 4.104 7 N -0.231 5.231 8 C 0.084 3.916 9 C -0.542 4.542 10 H 0.085 0.915 11 C -0.197 4.197 12 N -0.580 5.580 13 Si 0.787 3.213 14 H -0.192 1.192 15 H -0.211 1.211 16 H -0.195 1.195 17 C -0.107 4.107 18 C -0.181 4.181 19 C -0.208 4.208 20 H 0.084 0.916 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.226 0.774 26 H 0.046 0.954 27 H 0.084 0.916 28 H -0.019 1.019 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.462 -4.114 1.591 14.167 hybrid contribution 1.703 -0.280 0.142 1.731 sum -11.760 -4.395 1.734 12.673 Atomic orbital electron populations 1.21645 0.94285 1.01936 1.02044 1.22187 0.97648 0.95909 1.03175 1.21846 0.90775 0.93132 0.87827 0.89028 1.86528 1.76146 1.58331 1.15892 1.22921 0.97740 0.89522 1.00202 1.61802 1.12066 1.16875 1.32404 1.19373 0.82733 0.96502 0.92996 1.21470 0.91557 0.96592 1.44612 0.91550 1.25857 0.96711 1.01479 0.95698 1.70085 1.01027 1.35766 1.51167 0.85539 0.76807 0.79816 0.79116 1.19191 1.21072 1.19511 1.22192 1.03865 0.93383 0.91263 1.23037 0.90020 1.02125 1.02959 1.23059 1.00160 0.95056 1.02558 0.91592 0.92920 0.92662 0.90854 0.90971 0.77364 0.95365 0.91627 1.01900 0.98412 0.92946 0.91255 0.89256 0.86944 0.88782 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.81 71.98 0.71 -1.97 16 2 C -0.15 -3.24 5.61 30.59 0.17 -3.07 16 3 C 0.12 3.51 2.84 30.59 0.09 3.60 16 4 H 0.09 2.72 6.29 -2.39 -0.02 2.70 16 5 O -0.56 -17.00 12.82 -148.98 -1.91 -18.91 16 6 C 0.02 0.88 4.58 86.30 0.39 1.27 16 7 N -0.51 -22.25 4.52 -875.50 -3.95 -26.21 16 8 C 0.21 11.36 4.77 85.56 0.41 11.77 16 9 C -0.50 -28.70 7.82 25.60 0.20 -28.50 16 10 H 0.07 3.74 5.78 -2.91 -0.02 3.72 16 11 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 12 N -0.94 -57.26 13.29 21.45 0.28 -56.98 16 13 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 C 0.00 0.08 4.18 44.92 0.19 0.27 16 18 C -0.14 -4.74 9.16 30.62 0.28 -4.46 16 19 C -0.17 -6.69 9.48 30.62 0.29 -6.40 16 20 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 21 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.05 1.11 7.82 -2.39 -0.02 1.09 16 23 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.38 9.31 9.05 -74.05 -0.67 8.64 16 26 H 0.03 0.99 8.12 -2.39 -0.02 0.97 16 27 H 0.07 2.34 7.83 -2.38 -0.02 2.32 16 28 H -0.04 -2.19 7.99 -2.39 -0.02 -2.21 16 29 H 0.00 -0.12 7.73 -2.39 -0.02 -0.14 16 30 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 32 H 0.09 3.14 8.14 -2.39 -0.02 3.13 16 33 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.09 3.97 5.45 -2.39 -0.01 3.96 16 Total: -1.00 -65.13 284.68 0.02 -65.10 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.39 Total: 17.08 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 3.19 Total: -27.05 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.67 Total: -83.18 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -1.91 Total: -18.91 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.13 0.02 -65.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044415033.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.452 kcal (2) G-P(sol) polarization free energy of solvation -65.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds