Wall clock time and date at job start Mon Mar 30 2020 02:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47267 * 2 1 4 4 H 1.09003 * 109.47445 * 304.99795 * 3 2 1 5 5 O 1.42897 * 109.47440 * 64.99664 * 3 2 1 6 6 C 1.53001 * 109.47248 * 185.00041 * 3 2 1 7 7 N 1.46899 * 109.47317 * 179.97438 * 6 3 2 8 8 C 1.46899 * 111.00495 * 189.99751 * 7 6 3 9 9 C 1.50691 * 109.47482 * 163.40605 * 8 7 6 10 10 H 1.08001 * 120.00177 * 1.68183 * 9 8 7 11 11 C 1.37878 * 120.00152 * 181.67717 * 9 8 7 12 12 N 1.31517 * 119.99752 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00242 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46995 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47170 * 119.99962 * 13 11 9 16 16 H 1.48499 * 109.47416 * 240.00314 * 13 11 9 17 17 C 1.46908 * 111.00067 * 66.04315 * 7 6 3 18 18 C 1.53001 * 117.49739 * 131.69040 * 17 7 6 19 19 C 1.52993 * 117.49649 * 63.06779 * 17 7 6 20 20 H 1.08995 * 109.47529 * 300.00323 * 1 2 3 21 21 H 1.09010 * 109.47039 * 60.00355 * 1 2 3 22 22 H 1.09000 * 109.47157 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47365 * 239.99739 * 2 1 3 24 24 H 1.08996 * 109.47087 * 119.99792 * 2 1 3 25 25 H 0.96705 * 114.00052 * 59.99784 * 5 3 2 26 26 H 1.08993 * 109.47397 * 59.99786 * 6 3 2 27 27 H 1.09000 * 109.47013 * 299.99321 * 6 3 2 28 28 H 1.08998 * 109.46789 * 43.40373 * 8 7 6 29 29 H 1.08996 * 109.46783 * 283.41230 * 8 7 6 30 30 H 0.97004 * 119.99631 * 179.97438 * 12 11 9 31 31 H 1.09002 * 115.54796 * 277.39749 * 17 7 6 32 32 H 1.08991 * 117.50062 * 359.97438 * 18 17 7 33 33 H 1.09000 * 117.49190 * 145.02107 * 18 17 7 34 34 H 1.09003 * 117.49538 * 214.98045 * 19 17 7 35 35 H 1.09001 * 117.50239 * 359.97343 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6619 2.0814 1.2210 6 6 3.5648 1.4443 -0.1257 7 7 4.0545 2.8293 -0.1264 8 6 5.4789 2.8840 -0.4813 9 6 5.8463 4.2931 -0.8689 10 1 5.1033 5.0758 -0.8271 11 6 7.1310 4.5832 -1.2768 12 7 8.0357 3.6300 -1.3280 13 14 7.5866 6.3300 -1.7566 14 1 6.3983 7.2089 -1.6125 15 1 8.6737 6.8191 -0.8709 16 1 8.0502 6.3511 -3.1672 17 6 3.8099 3.4747 1.1705 18 6 4.9760 4.2251 1.8171 19 6 4.5125 2.8867 2.3958 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.0141 1.6543 2.0139 26 1 3.8532 0.9570 -1.0570 27 1 3.9994 0.9053 0.7161 28 1 5.6703 2.2148 -1.3201 29 1 6.0787 2.5744 0.3746 30 1 8.9394 3.8340 -1.6154 31 1 2.8088 3.8821 1.3115 32 1 5.9246 4.2395 1.2807 33 1 4.7420 5.1264 2.3837 34 1 3.9736 2.9076 3.3431 35 1 5.1558 2.0207 2.2399 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044415034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:13 Heat of formation + Delta-G solvation = -46.864606 kcal Electronic energy + Delta-G solvation = -14974.283705 eV Core-core repulsion = 12586.219915 eV Total energy + Delta-G solvation = -2388.063790 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.31592 -38.04260 -34.99450 -34.10571 -33.38264 -30.12398 -27.76131 -24.61707 -24.17787 -22.91350 -22.07225 -20.47694 -18.42661 -17.71498 -17.05554 -16.70768 -16.35502 -15.92752 -15.06178 -14.87103 -14.45921 -14.22909 -13.43762 -13.25632 -13.06511 -12.90378 -12.69797 -12.62911 -12.50332 -12.04401 -11.86383 -11.79376 -11.67795 -11.38286 -11.22605 -11.05136 -10.59454 -10.22807 -8.87037 -8.17529 -6.23214 1.40033 1.41314 1.54787 2.41405 3.07119 3.16258 3.29379 3.60955 3.98018 4.15998 4.23578 4.28183 4.29659 4.36165 4.45202 4.71610 4.78436 4.83848 4.94605 4.99675 5.09882 5.15010 5.17417 5.23483 5.37452 5.44523 5.46526 5.70283 5.71071 6.10676 6.44463 6.68082 6.90084 6.94950 7.42464 8.92857 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.044804 B = 0.007748 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.790368 B = 3612.834310 C = 3846.119747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.148 4.148 3 C 0.125 3.875 4 H 0.088 0.912 5 O -0.560 6.560 6 C 0.025 3.975 7 N -0.517 5.517 8 C 0.203 3.797 9 C -0.497 4.497 10 H 0.057 0.943 11 C 0.001 3.999 12 N -0.937 5.937 13 Si 0.962 3.038 14 H -0.265 1.265 15 H -0.279 1.279 16 H -0.280 1.280 17 C 0.051 3.949 18 C -0.204 4.204 19 C -0.206 4.206 20 H 0.056 0.944 21 H 0.050 0.950 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.377 0.623 26 H 0.064 0.936 27 H 0.030 0.970 28 H -0.004 1.004 29 H -0.027 1.027 30 H 0.263 0.737 31 H 0.133 0.867 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.629 -5.493 5.620 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.186 4.186 3 C 0.066 3.934 4 H 0.106 0.894 5 O -0.367 6.367 6 C -0.103 4.103 7 N -0.239 5.239 8 C 0.077 3.923 9 C -0.535 4.535 10 H 0.076 0.924 11 C -0.197 4.197 12 N -0.578 5.578 13 Si 0.788 3.212 14 H -0.189 1.189 15 H -0.205 1.205 16 H -0.206 1.206 17 C -0.058 4.058 18 C -0.242 4.242 19 C -0.245 4.245 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.226 0.774 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.014 0.986 29 H -0.009 1.009 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.031 -4.870 4.779 13.831 hybrid contribution 1.713 -0.152 0.434 1.773 sum -10.319 -5.021 5.214 12.604 Atomic orbital electron populations 1.21647 0.94337 1.01898 1.02039 1.22142 0.97547 0.95732 1.03184 1.21799 0.90803 0.93272 0.87549 0.89442 1.86550 1.76710 1.57563 1.15844 1.22880 0.97404 0.89557 1.00442 1.62020 1.18739 1.15606 1.27564 1.19472 0.83463 0.96328 0.93009 1.21337 0.95171 0.94738 1.42291 0.92429 1.25808 0.96453 1.01389 0.96019 1.70086 1.03950 1.34250 1.49515 0.85429 0.78207 0.79836 0.77771 1.18942 1.20496 1.20598 1.22717 0.96616 1.01297 0.85171 1.23513 1.01321 0.95502 1.03822 1.23289 1.05264 0.96359 0.99636 0.92470 0.93119 0.91669 0.90878 0.90925 0.77430 0.91720 0.95141 0.98586 1.00910 0.92867 0.84966 0.88910 0.88481 0.86490 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.81 71.98 0.71 -1.93 16 2 C -0.15 -3.10 5.61 30.59 0.17 -2.92 16 3 C 0.13 3.46 3.20 30.59 0.10 3.56 16 4 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 5 O -0.56 -15.00 9.74 -148.98 -1.45 -16.45 16 6 C 0.03 0.88 4.74 86.30 0.41 1.29 16 7 N -0.52 -22.49 4.68 -875.55 -4.09 -26.59 16 8 C 0.20 10.85 4.27 85.55 0.37 11.22 16 9 C -0.50 -28.22 6.50 25.60 0.17 -28.05 16 10 H 0.06 3.30 7.78 -2.91 -0.02 3.28 16 11 C 0.00 0.03 5.46 84.65 0.46 0.49 16 12 N -0.94 -56.59 13.29 21.45 0.28 -56.30 16 13 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 C 0.05 1.96 4.36 44.91 0.20 2.15 16 18 C -0.20 -8.37 8.89 30.59 0.27 -8.10 16 19 C -0.21 -7.04 8.93 30.59 0.27 -6.77 16 20 H 0.06 1.09 7.82 -2.39 -0.02 1.08 16 21 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.38 8.08 8.63 -74.05 -0.64 7.44 16 26 H 0.06 2.34 7.85 -2.39 -0.02 2.32 16 27 H 0.03 1.03 7.14 -2.39 -0.02 1.01 16 28 H 0.00 -0.23 7.80 -2.39 -0.02 -0.25 16 29 H -0.03 -1.52 6.02 -2.39 -0.01 -1.54 16 30 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 31 H 0.13 4.81 6.75 -2.39 -0.02 4.80 16 32 H 0.09 4.70 4.77 -2.39 -0.01 4.68 16 33 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 34 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.06 2.44 7.14 -2.39 -0.02 2.42 16 Total: -1.00 -63.70 277.34 0.31 -63.39 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.42 Total: 18.00 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 3.12 Total: -29.05 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -3.81 Total: -82.89 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -1.45 Total: -16.45 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.70 0.31 -63.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044415034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.526 kcal (2) G-P(sol) polarization free energy of solvation -63.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds