Wall clock time and date at job start Mon Mar 30 2020 03:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46992 * 2 1 4 4 N 1.46500 * 109.46812 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00335 * 84.70383 * 4 3 2 6 6 H 1.08003 * 119.99938 * 321.45029 * 5 4 3 7 7 C 1.38813 * 119.99991 * 141.44759 * 5 4 3 8 8 N 1.31621 * 120.00182 * 338.85881 * 7 5 4 9 9 Si 1.86798 * 119.99578 * 158.86487 * 7 5 4 10 10 H 1.48499 * 109.47433 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47194 * 120.00110 * 9 7 5 12 12 H 1.48501 * 109.46773 * 239.99704 * 9 7 5 13 13 C 1.46504 * 119.99896 * 264.70054 * 4 3 2 14 14 C 1.52992 * 109.47143 * 90.00194 * 13 4 3 15 15 H 1.09006 * 109.82537 * 305.70089 * 14 13 4 16 16 C 1.54384 * 109.83196 * 184.81474 * 14 13 4 17 17 C 1.55458 * 102.18527 * 219.18227 * 16 14 13 18 18 C 1.54945 * 100.98893 * 34.03726 * 17 16 14 19 19 O 1.43245 * 109.83268 * 66.58627 * 14 13 4 20 20 H 1.09009 * 109.47403 * 300.00250 * 1 2 3 21 21 H 1.09004 * 109.47074 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47168 * 60.00006 * 1 2 3 23 23 H 1.09008 * 109.47074 * 119.99413 * 2 1 3 24 24 H 1.08999 * 109.47331 * 239.99923 * 2 1 3 25 25 H 1.08999 * 109.46880 * 299.99527 * 3 2 1 26 26 H 1.08999 * 109.47145 * 59.99809 * 3 2 1 27 27 H 0.96995 * 119.99882 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47116 * 210.00150 * 13 4 3 29 29 H 1.09003 * 109.47097 * 330.00136 * 13 4 3 30 30 H 1.08997 * 110.84323 * 337.31674 * 16 14 13 31 31 H 1.09000 * 110.84931 * 100.94079 * 16 14 13 32 32 H 1.09001 * 111.05431 * 276.12164 * 17 16 14 33 33 H 1.08997 * 111.14182 * 151.99368 * 17 16 14 34 34 H 1.09000 * 110.31129 * 204.68783 * 18 17 16 35 35 H 1.08998 * 110.30772 * 82.51781 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1892 1.3332 -1.1817 6 1 3.8254 0.6760 -1.9577 7 6 5.3504 2.0671 -1.3817 8 7 5.5790 3.1459 -0.6631 9 14 6.5883 1.5237 -2.6706 10 1 6.1001 0.2895 -3.3366 11 1 6.7553 2.5991 -3.6810 12 1 7.8941 1.2502 -2.0184 13 6 4.2380 1.5595 1.2624 14 6 4.4932 0.1639 1.8351 15 1 3.5516 -0.3786 1.9204 16 6 5.1577 0.2810 3.2237 17 6 6.1913 -0.8797 3.1918 18 6 6.5972 -0.8728 1.6965 19 8 5.3923 -0.5544 0.9822 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 6.3902 3.6589 -0.8031 28 1 5.1903 2.0591 1.0849 29 1 3.6492 2.1412 1.9717 30 1 5.6583 1.2429 3.3342 31 1 4.4265 0.1295 4.0177 32 1 5.7261 -1.8260 3.4682 33 1 7.0462 -0.6626 3.8320 34 1 6.9647 -1.8551 1.3996 35 1 7.3570 -0.1128 1.5143 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045092595.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:57 Heat of formation + Delta-G solvation = -38.455870 kcal Electronic energy + Delta-G solvation = -15300.421326 eV Core-core repulsion = 12912.722167 eV Total energy + Delta-G solvation = -2387.699159 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.66021 -35.79588 -32.78431 -31.45708 -30.80665 -29.07223 -25.44641 -25.04209 -22.21062 -21.16050 -20.08662 -19.82207 -16.76425 -15.92329 -15.27782 -14.69614 -14.23939 -13.78878 -13.47437 -13.12397 -12.83613 -12.65799 -12.14815 -11.62179 -11.37639 -11.13129 -10.99418 -10.86690 -10.68341 -10.61193 -10.50632 -10.26117 -10.20483 -9.87757 -9.70917 -9.40201 -8.58356 -8.28385 -6.36732 -5.60926 -3.18105 3.47112 3.54469 3.60377 4.57878 4.68859 5.03157 5.26944 5.41453 5.58589 5.62617 5.70075 5.76486 5.86768 5.89922 6.04797 6.15306 6.22681 6.27918 6.34208 6.39745 6.51040 6.59048 6.65378 6.70266 6.81596 6.90726 7.07740 7.28763 7.76617 7.98020 8.04321 8.70796 9.36445 9.99817 10.56986 11.39456 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.016197 C = 0.010052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.078203 B = 1728.342324 C = 2784.946915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.143 4.143 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.234 4.234 6 H 0.055 0.945 7 C 0.015 3.985 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.294 1.294 12 H -0.290 1.290 13 C 0.138 3.862 14 C 0.063 3.937 15 H 0.060 0.940 16 C -0.152 4.152 17 C -0.156 4.156 18 C 0.048 3.952 19 O -0.349 6.349 20 H 0.045 0.955 21 H 0.041 0.959 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.031 0.969 27 H 0.250 0.750 28 H 0.097 0.903 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.189 -5.824 7.088 9.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.364 4.364 6 H 0.072 0.928 7 C -0.184 4.184 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.217 1.217 13 C 0.011 3.989 14 C 0.003 3.997 15 H 0.078 0.922 16 C -0.190 4.190 17 C -0.193 4.193 18 C -0.029 4.029 19 O -0.267 6.267 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.112 -5.727 6.839 9.167 hybrid contribution 0.848 -0.321 -0.296 0.954 sum -1.264 -6.048 6.543 8.999 Atomic orbital electron populations 1.21738 0.97577 1.00213 1.00943 1.22187 0.93432 1.01221 1.01451 1.20904 0.85701 0.92755 0.98576 1.43649 0.99022 1.84651 1.02553 1.18873 1.05840 1.17973 0.93684 0.92785 1.25046 1.00687 0.94616 0.98007 1.70009 1.26115 1.14726 1.43124 0.86360 0.81886 0.78121 0.81160 1.20168 1.22167 1.21696 1.21323 0.99968 0.91350 0.86289 1.23727 0.91872 0.96906 0.87215 0.92249 1.23206 0.98316 0.98930 0.98560 1.23253 0.99242 0.99004 0.97849 1.23256 0.90029 0.99578 0.90079 1.88632 1.26340 1.75176 1.36589 0.93557 0.93963 0.93244 0.93166 0.92405 0.93901 0.95062 0.94021 0.88559 0.95168 0.90683 0.91253 0.91268 0.90992 0.91157 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.14 -2.72 6.23 -26.73 -0.17 -2.89 16 3 C 0.15 3.22 5.72 -4.04 -0.02 3.20 16 4 N -0.58 -14.86 2.42 -173.23 -0.42 -15.28 16 5 C -0.23 -6.64 9.03 -15.06 -0.14 -6.77 16 6 H 0.05 1.57 7.91 -52.48 -0.42 1.16 16 7 C 0.02 0.44 4.95 -17.43 -0.09 0.35 16 8 N -0.90 -26.51 11.53 55.49 0.64 -25.87 16 9 Si 0.89 22.80 29.60 -169.99 -5.03 17.77 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 C 0.14 3.29 4.90 -4.04 -0.02 3.27 16 14 C 0.06 1.30 3.76 -26.01 -0.10 1.20 16 15 H 0.06 1.22 6.47 -51.93 -0.34 0.88 16 16 C -0.15 -2.48 6.56 -24.70 -0.16 -2.65 16 17 C -0.16 -2.30 7.16 -24.40 -0.17 -2.47 16 18 C 0.05 0.87 7.78 38.18 0.30 1.16 16 19 O -0.35 -7.95 10.58 -35.23 -0.37 -8.32 16 20 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.96 6.47 -51.92 -0.34 0.63 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.04 0.97 8.08 -51.93 -0.42 0.55 16 26 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.10 2.63 5.58 -51.93 -0.29 2.34 16 29 H 0.03 0.68 7.86 -51.93 -0.41 0.27 16 30 H 0.07 1.25 7.85 -51.93 -0.41 0.84 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 281.10 15.07 4.24 4.24 Total: -1.00 -30.55 281.10 -7.11 -37.66 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.96 Total: -2.72 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -0.20 Total: -7.48 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.22 Total: -41.15 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.37 Total: -8.32 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.55 -7.11 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092595.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.794 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds