Wall clock time and date at job start Mon Mar 30 2020 03:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46992 * 2 1 4 4 N 1.46500 * 109.46812 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00335 * 84.70383 * 4 3 2 6 6 H 1.08003 * 119.99938 * 321.45029 * 5 4 3 7 7 C 1.38813 * 119.99991 * 141.44759 * 5 4 3 8 8 N 1.31621 * 120.00182 * 338.85881 * 7 5 4 9 9 Si 1.86798 * 119.99578 * 158.86487 * 7 5 4 10 10 H 1.48499 * 109.47433 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47194 * 120.00110 * 9 7 5 12 12 H 1.48501 * 109.46773 * 239.99704 * 9 7 5 13 13 C 1.46504 * 119.99896 * 264.70054 * 4 3 2 14 14 C 1.52992 * 109.47143 * 90.00194 * 13 4 3 15 15 H 1.09006 * 109.82537 * 305.70089 * 14 13 4 16 16 C 1.54384 * 109.83196 * 184.81474 * 14 13 4 17 17 C 1.55458 * 102.18527 * 219.18227 * 16 14 13 18 18 C 1.54945 * 100.98893 * 34.03726 * 17 16 14 19 19 O 1.43245 * 109.83268 * 66.58627 * 14 13 4 20 20 H 1.09009 * 109.47403 * 300.00250 * 1 2 3 21 21 H 1.09004 * 109.47074 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47168 * 60.00006 * 1 2 3 23 23 H 1.09008 * 109.47074 * 119.99413 * 2 1 3 24 24 H 1.08999 * 109.47331 * 239.99923 * 2 1 3 25 25 H 1.08999 * 109.46880 * 299.99527 * 3 2 1 26 26 H 1.08999 * 109.47145 * 59.99809 * 3 2 1 27 27 H 0.96995 * 119.99882 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47116 * 210.00150 * 13 4 3 29 29 H 1.09003 * 109.47097 * 330.00136 * 13 4 3 30 30 H 1.08997 * 110.84323 * 337.31674 * 16 14 13 31 31 H 1.09000 * 110.84931 * 100.94079 * 16 14 13 32 32 H 1.09001 * 111.05431 * 276.12164 * 17 16 14 33 33 H 1.08997 * 111.14182 * 151.99368 * 17 16 14 34 34 H 1.09000 * 110.31129 * 204.68783 * 18 17 16 35 35 H 1.08998 * 110.30772 * 82.51781 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1892 1.3332 -1.1817 6 1 3.8254 0.6760 -1.9577 7 6 5.3504 2.0671 -1.3817 8 7 5.5790 3.1459 -0.6631 9 14 6.5883 1.5237 -2.6706 10 1 6.1001 0.2895 -3.3366 11 1 6.7553 2.5991 -3.6810 12 1 7.8941 1.2502 -2.0184 13 6 4.2380 1.5595 1.2624 14 6 4.4932 0.1639 1.8351 15 1 3.5516 -0.3786 1.9204 16 6 5.1577 0.2810 3.2237 17 6 6.1913 -0.8797 3.1918 18 6 6.5972 -0.8728 1.6965 19 8 5.3923 -0.5544 0.9822 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 6.3902 3.6589 -0.8031 28 1 5.1903 2.0591 1.0849 29 1 3.6492 2.1412 1.9717 30 1 5.6583 1.2429 3.3342 31 1 4.4265 0.1295 4.0177 32 1 5.7261 -1.8260 3.4682 33 1 7.0462 -0.6626 3.8320 34 1 6.9647 -1.8551 1.3996 35 1 7.3570 -0.1128 1.5143 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092595.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:56 Heat of formation + Delta-G solvation = -57.006279 kcal Electronic energy + Delta-G solvation = -15301.225732 eV Core-core repulsion = 12912.722167 eV Total energy + Delta-G solvation = -2388.503565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20865 -37.62317 -34.56253 -32.99953 -32.60390 -30.70712 -27.27934 -26.75565 -23.90569 -22.49446 -21.71004 -21.57516 -18.71124 -17.55595 -16.88940 -16.54798 -15.93333 -15.63017 -15.11036 -14.81380 -14.37483 -14.07175 -13.71008 -13.24416 -13.11278 -12.84549 -12.68932 -12.50034 -12.41821 -12.15910 -12.07924 -11.92553 -11.75079 -11.65869 -11.51045 -11.13174 -10.43257 -10.23225 -8.44748 -7.74065 -5.36625 1.41390 1.44439 1.55324 2.54322 3.17472 3.31834 3.71009 3.83163 4.04976 4.13855 4.23507 4.41236 4.42265 4.55511 4.70138 4.80796 4.83668 4.89626 4.90871 4.95034 5.00191 5.06860 5.10061 5.24053 5.26621 5.34997 5.46750 5.66160 5.72521 5.83362 6.45324 6.58870 7.26106 7.95450 8.46226 9.20322 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.016197 C = 0.010052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.078203 B = 1728.342324 C = 2784.946915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.144 3.856 4 N -0.598 5.598 5 C -0.237 4.237 6 H 0.039 0.961 7 C -0.029 4.029 8 N -0.922 5.922 9 Si 0.946 3.054 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.291 1.291 13 C 0.138 3.862 14 C 0.065 3.935 15 H 0.062 0.938 16 C -0.146 4.146 17 C -0.139 4.139 18 C 0.035 3.965 19 O -0.389 6.389 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.047 0.953 27 H 0.248 0.752 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.665 -7.080 8.465 11.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.018 3.982 4 N -0.318 5.318 5 C -0.368 4.368 6 H 0.057 0.943 7 C -0.225 4.225 8 N -0.567 5.567 9 Si 0.776 3.224 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.218 1.218 13 C 0.012 3.988 14 C 0.006 3.994 15 H 0.080 0.920 16 C -0.184 4.184 17 C -0.176 4.176 18 C -0.042 4.042 19 O -0.309 6.309 20 H 0.081 0.919 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.604 -6.996 8.227 11.109 hybrid contribution 0.959 0.076 -0.724 1.204 sum -1.645 -6.921 7.503 10.339 Atomic orbital electron populations 1.21662 0.94216 1.01835 1.01898 1.21980 0.96247 0.98554 1.00217 1.21034 0.83851 0.94719 0.98560 1.43890 1.00541 1.85009 1.02377 1.18928 1.06374 1.17115 0.94400 0.94301 1.25603 1.02084 0.94821 1.00011 1.70112 1.26371 1.15613 1.44622 0.85542 0.79825 0.77743 0.79317 1.19971 1.21705 1.21772 1.21274 0.98123 0.93454 0.85978 1.23554 0.92371 0.94431 0.89092 0.92011 1.23176 0.99166 0.99457 0.96611 1.23210 0.99686 0.99204 0.95520 1.23491 0.88264 0.99894 0.92517 1.88578 1.28019 1.75381 1.38913 0.91948 0.92017 0.92975 0.93156 0.94847 0.95379 0.93496 0.94302 0.92163 0.94311 0.91401 0.88234 0.89236 0.88284 0.89293 0.94759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.91 71.98 0.71 -3.16 16 2 C -0.13 -4.84 6.23 30.59 0.19 -4.65 16 3 C 0.14 6.28 5.72 86.38 0.49 6.77 16 4 N -0.60 -31.09 2.42 -701.99 -1.70 -32.79 16 5 C -0.24 -13.79 9.03 84.03 0.76 -13.04 16 6 H 0.04 2.34 7.91 -2.91 -0.02 2.31 16 7 C -0.03 -1.69 4.95 84.86 0.42 -1.27 16 8 N -0.92 -55.83 11.53 21.65 0.25 -55.58 16 9 Si 0.95 47.74 29.60 68.60 2.03 49.77 16 10 H -0.27 -13.62 7.11 99.48 0.71 -12.92 16 11 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 13 C 0.14 6.65 4.90 86.38 0.42 7.07 16 14 C 0.07 2.63 3.76 31.06 0.12 2.75 16 15 H 0.06 2.45 6.47 -2.38 -0.02 2.43 16 16 C -0.15 -4.42 6.56 31.91 0.21 -4.21 16 17 C -0.14 -3.64 7.16 32.11 0.23 -3.41 16 18 C 0.03 1.22 7.78 72.65 0.57 1.79 16 19 O -0.39 -17.68 10.58 -148.98 -1.58 -19.26 16 20 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 21 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 22 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.05 1.86 6.47 -2.38 -0.02 1.84 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 26 H 0.05 1.87 7.83 -2.39 -0.02 1.85 16 27 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.06 3.38 5.58 -2.39 -0.01 3.37 16 29 H 0.04 1.74 7.86 -2.39 -0.02 1.72 16 30 H 0.07 2.15 7.85 -2.39 -0.02 2.13 16 31 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -66.90 281.10 4.16 -62.74 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.03 Total: 6.48 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 4.12 Total: -11.36 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -1.45 Total: -88.37 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -1.58 Total: -19.26 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -66.90 4.16 -62.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092595.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.736 kcal (2) G-P(sol) polarization free energy of solvation -66.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds