Wall clock time and date at job start Mon Mar 30 2020 03:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47126 * 2 1 4 4 N 1.46499 * 109.47369 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99794 * 275.30337 * 4 3 2 6 6 H 1.07999 * 120.00362 * 37.63727 * 5 4 3 7 7 C 1.38817 * 119.99619 * 217.63844 * 5 4 3 8 8 N 1.31612 * 120.00164 * 21.40483 * 7 5 4 9 9 Si 1.86802 * 119.99619 * 201.41033 * 7 5 4 10 10 H 1.48497 * 109.47513 * 89.99854 * 9 7 5 11 11 H 1.48503 * 109.46967 * 209.99862 * 9 7 5 12 12 H 1.48499 * 109.47312 * 329.99317 * 9 7 5 13 13 C 1.46500 * 120.00289 * 95.29557 * 4 3 2 14 14 C 1.52995 * 109.47363 * 270.00357 * 13 4 3 15 15 H 1.09003 * 110.27461 * 57.90515 * 14 13 4 16 16 C 1.54941 * 110.31289 * 179.97438 * 14 13 4 17 17 C 1.55299 * 100.98583 * 155.33829 * 16 14 13 18 18 C 1.54440 * 102.22644 * 325.92351 * 17 16 14 19 19 O 1.43240 * 107.60511 * 21.29376 * 18 17 16 20 20 H 1.09000 * 109.47416 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47543 * 300.00222 * 1 2 3 22 22 H 1.09006 * 109.46763 * 60.00318 * 1 2 3 23 23 H 1.08997 * 109.47543 * 239.99778 * 2 1 3 24 24 H 1.09006 * 109.46763 * 119.99682 * 2 1 3 25 25 H 1.08997 * 109.47091 * 59.99502 * 3 2 1 26 26 H 1.09005 * 109.47323 * 299.99973 * 3 2 1 27 27 H 0.96998 * 119.99996 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.46886 * 150.00077 * 13 4 3 29 29 H 1.09005 * 109.46719 * 30.00207 * 13 4 3 30 30 H 1.09001 * 111.12468 * 273.28424 * 16 14 13 31 31 H 1.09005 * 111.12369 * 37.39410 * 16 14 13 32 32 H 1.09005 * 110.84441 * 84.07916 * 17 16 14 33 33 H 1.08994 * 110.85028 * 207.69855 * 17 16 14 34 34 H 1.08996 * 109.78641 * 261.79268 * 18 17 16 35 35 H 1.08998 * 109.92539 * 140.87560 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.3331 1.1818 6 1 3.8174 0.6871 1.9633 7 6 5.3605 2.0527 1.3745 8 7 5.6005 3.1255 0.6509 9 14 6.5962 1.4981 2.6610 10 1 7.5674 0.5602 2.0427 11 1 7.3202 2.6802 3.1939 12 1 5.8835 0.8133 3.7693 13 6 4.2381 1.5595 -1.2624 14 6 4.4933 0.1639 -1.8350 15 1 3.5501 -0.3619 -1.9832 16 6 5.2680 0.2650 -3.1731 17 6 5.9569 -1.1260 -3.2220 18 6 6.2411 -1.4029 -1.7294 19 8 5.3520 -0.5847 -0.9601 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6766 1.9563 0.8899 26 1 1.6767 1.9564 -0.8900 27 1 6.4191 3.6280 0.7853 28 1 5.1904 2.0592 -1.0847 29 1 3.6492 2.1412 -1.9717 30 1 4.5858 0.3953 -4.0131 31 1 6.0050 1.0675 -3.1406 32 1 5.2841 -1.8778 -3.6345 33 1 6.8847 -1.0795 -3.7921 34 1 7.2745 -1.1463 -1.4967 35 1 6.0621 -2.4547 -1.5061 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045092596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:02 Heat of formation + Delta-G solvation = -38.238008 kcal Electronic energy + Delta-G solvation = -15276.027535 eV Core-core repulsion = 12888.337823 eV Total energy + Delta-G solvation = -2387.689712 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.63333 -35.82745 -32.80357 -31.46496 -30.82019 -29.11320 -25.43844 -25.03485 -22.20255 -21.10364 -20.15342 -19.84930 -16.76209 -15.90513 -15.18044 -14.70483 -14.26183 -13.94895 -13.54795 -13.16411 -12.79408 -12.65785 -12.01717 -11.66496 -11.39562 -11.13249 -11.02195 -10.84942 -10.76410 -10.61023 -10.45815 -10.22637 -10.20639 -9.84199 -9.72702 -9.42212 -8.58900 -8.27374 -6.39164 -5.60726 -3.17242 3.50779 3.56353 3.59615 4.58038 4.69150 5.02263 5.22273 5.41325 5.56869 5.62906 5.69844 5.74443 5.85014 5.89281 6.02916 6.17376 6.20166 6.24875 6.34036 6.37631 6.50353 6.58361 6.67238 6.69802 6.81507 6.86752 7.06840 7.27729 7.76604 7.98470 8.04529 8.70581 9.36255 10.00083 10.56307 11.40071 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.015798 C = 0.010077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.960604 B = 1771.959303 C = 2777.809615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.143 4.143 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.236 4.236 6 H 0.055 0.945 7 C 0.016 3.984 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.286 1.286 11 H -0.296 1.296 12 H -0.280 1.280 13 C 0.146 3.854 14 C 0.065 3.935 15 H 0.049 0.951 16 C -0.153 4.153 17 C -0.154 4.154 18 C 0.045 3.955 19 O -0.345 6.345 20 H 0.041 0.959 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.031 0.969 27 H 0.251 0.749 28 H 0.101 0.899 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 -6.104 -7.070 9.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.366 4.366 6 H 0.073 0.927 7 C -0.183 4.183 8 N -0.539 5.539 9 Si 0.726 3.274 10 H -0.213 1.213 11 H -0.222 1.222 12 H -0.205 1.205 13 C 0.019 3.981 14 C 0.005 3.995 15 H 0.066 0.934 16 C -0.192 4.192 17 C -0.192 4.192 18 C -0.032 4.032 19 O -0.263 6.263 20 H 0.060 0.940 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.118 0.882 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.556 -5.938 -6.804 9.386 hybrid contribution 0.806 -0.531 0.260 1.000 sum -1.750 -6.469 -6.544 9.367 Atomic orbital electron populations 1.21737 0.97571 1.00212 1.00951 1.22178 0.93427 1.01223 1.01444 1.20905 0.85660 0.92770 0.98610 1.43652 0.99045 1.84582 1.02559 1.18848 1.05291 1.18932 0.93491 0.92738 1.25023 1.00571 0.94611 0.98077 1.69984 1.25586 1.15294 1.43085 0.86402 0.82032 0.77592 0.81335 1.21329 1.22235 1.20526 1.21136 1.00222 0.90543 0.86227 1.23983 0.91673 0.96570 0.87230 0.93358 1.23321 0.99999 0.96889 0.98950 1.23086 1.00800 0.97827 0.97485 1.23045 0.95042 0.95104 0.90042 1.88715 1.49423 1.58035 1.30150 0.93976 0.93231 0.93551 0.93203 0.92413 0.93862 0.95029 0.93923 0.88174 0.94764 0.91084 0.90495 0.91455 0.91058 0.92513 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 37.16 0.37 -1.86 16 2 C -0.14 -2.72 6.23 -26.73 -0.17 -2.88 16 3 C 0.15 3.20 5.72 -4.04 -0.02 3.18 16 4 N -0.58 -14.83 2.42 -173.24 -0.42 -15.25 16 5 C -0.24 -6.70 8.99 -15.06 -0.14 -6.83 16 6 H 0.05 1.58 7.92 -52.49 -0.42 1.17 16 7 C 0.02 0.46 4.95 -17.43 -0.09 0.38 16 8 N -0.90 -26.51 11.48 55.49 0.64 -25.87 16 9 Si 0.90 22.89 29.60 -169.99 -5.03 17.86 16 10 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 C 0.15 3.48 5.09 -4.04 -0.02 3.46 16 14 C 0.07 1.35 3.70 -25.71 -0.10 1.26 16 15 H 0.05 0.99 6.60 -51.93 -0.34 0.64 16 16 C -0.15 -2.54 6.57 -24.49 -0.16 -2.70 16 17 C -0.15 -2.26 7.02 -24.76 -0.17 -2.44 16 18 C 0.05 0.80 7.80 37.91 0.30 1.10 16 19 O -0.34 -7.93 10.55 -35.23 -0.37 -8.30 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.96 6.60 -51.93 -0.34 0.61 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 25 H 0.04 0.97 8.08 -51.93 -0.42 0.55 16 26 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 27 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.10 2.74 5.52 -51.93 -0.29 2.45 16 29 H 0.03 0.76 7.86 -51.93 -0.41 0.35 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 281.40 15.07 4.24 4.24 Total: -1.00 -30.52 281.40 -7.12 -37.64 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.98 Total: -2.98 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -0.20 Total: -7.34 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.22 Total: -41.12 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.37 Total: -8.30 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.52 -7.12 -37.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.598 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds