Wall clock time and date at job start Mon Mar 30 2020 03:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47126 * 2 1 4 4 N 1.46499 * 109.47369 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99794 * 275.30337 * 4 3 2 6 6 H 1.07999 * 120.00362 * 37.63727 * 5 4 3 7 7 C 1.38817 * 119.99619 * 217.63844 * 5 4 3 8 8 N 1.31612 * 120.00164 * 21.40483 * 7 5 4 9 9 Si 1.86802 * 119.99619 * 201.41033 * 7 5 4 10 10 H 1.48497 * 109.47513 * 89.99854 * 9 7 5 11 11 H 1.48503 * 109.46967 * 209.99862 * 9 7 5 12 12 H 1.48499 * 109.47312 * 329.99317 * 9 7 5 13 13 C 1.46500 * 120.00289 * 95.29557 * 4 3 2 14 14 C 1.52995 * 109.47363 * 270.00357 * 13 4 3 15 15 H 1.09003 * 110.27461 * 57.90515 * 14 13 4 16 16 C 1.54941 * 110.31289 * 179.97438 * 14 13 4 17 17 C 1.55299 * 100.98583 * 155.33829 * 16 14 13 18 18 C 1.54440 * 102.22644 * 325.92351 * 17 16 14 19 19 O 1.43240 * 107.60511 * 21.29376 * 18 17 16 20 20 H 1.09000 * 109.47416 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47543 * 300.00222 * 1 2 3 22 22 H 1.09006 * 109.46763 * 60.00318 * 1 2 3 23 23 H 1.08997 * 109.47543 * 239.99778 * 2 1 3 24 24 H 1.09006 * 109.46763 * 119.99682 * 2 1 3 25 25 H 1.08997 * 109.47091 * 59.99502 * 3 2 1 26 26 H 1.09005 * 109.47323 * 299.99973 * 3 2 1 27 27 H 0.96998 * 119.99996 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.46886 * 150.00077 * 13 4 3 29 29 H 1.09005 * 109.46719 * 30.00207 * 13 4 3 30 30 H 1.09001 * 111.12468 * 273.28424 * 16 14 13 31 31 H 1.09005 * 111.12369 * 37.39410 * 16 14 13 32 32 H 1.09005 * 110.84441 * 84.07916 * 17 16 14 33 33 H 1.08994 * 110.85028 * 207.69855 * 17 16 14 34 34 H 1.08996 * 109.78641 * 261.79268 * 18 17 16 35 35 H 1.08998 * 109.92539 * 140.87560 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.3331 1.1818 6 1 3.8174 0.6871 1.9633 7 6 5.3605 2.0527 1.3745 8 7 5.6005 3.1255 0.6509 9 14 6.5962 1.4981 2.6610 10 1 7.5674 0.5602 2.0427 11 1 7.3202 2.6802 3.1939 12 1 5.8835 0.8133 3.7693 13 6 4.2381 1.5595 -1.2624 14 6 4.4933 0.1639 -1.8350 15 1 3.5501 -0.3619 -1.9832 16 6 5.2680 0.2650 -3.1731 17 6 5.9569 -1.1260 -3.2220 18 6 6.2411 -1.4029 -1.7294 19 8 5.3520 -0.5847 -0.9601 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6766 1.9563 0.8899 26 1 1.6767 1.9564 -0.8900 27 1 6.4191 3.6280 0.7853 28 1 5.1904 2.0592 -1.0847 29 1 3.6492 2.1412 -1.9717 30 1 4.5858 0.3953 -4.0131 31 1 6.0050 1.0675 -3.1406 32 1 5.2841 -1.8778 -3.6345 33 1 6.8847 -1.0795 -3.7921 34 1 7.2745 -1.1463 -1.4967 35 1 6.0621 -2.4547 -1.5061 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:59 Heat of formation + Delta-G solvation = -56.730845 kcal Electronic energy + Delta-G solvation = -15276.829445 eV Core-core repulsion = 12888.337823 eV Total energy + Delta-G solvation = -2388.491622 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.17286 -37.65146 -34.56967 -33.00356 -32.61997 -30.74104 -27.27717 -26.72244 -23.89513 -22.42603 -21.72613 -21.64676 -18.70817 -17.51855 -16.87546 -16.45043 -15.93313 -15.72238 -15.21724 -14.82808 -14.41116 -14.07687 -13.56873 -13.23148 -13.13367 -12.83973 -12.67760 -12.51308 -12.41024 -12.26609 -12.06669 -11.90895 -11.69595 -11.64365 -11.51737 -11.15489 -10.42565 -10.18425 -8.46535 -7.73918 -5.35321 1.43086 1.48200 1.53716 2.55434 3.16171 3.32352 3.73128 3.78146 4.06284 4.13359 4.23608 4.39016 4.41620 4.55168 4.70544 4.80607 4.83227 4.89954 4.90606 4.94230 4.99321 5.06936 5.11251 5.24632 5.26809 5.33007 5.46621 5.66205 5.72448 5.83879 6.45613 6.60687 7.26265 7.95942 8.45931 9.21021 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.015798 C = 0.010077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.960604 B = 1771.959303 C = 2777.809615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.144 3.856 4 N -0.597 5.597 5 C -0.238 4.238 6 H 0.040 0.960 7 C -0.029 4.029 8 N -0.921 5.921 9 Si 0.947 3.053 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.274 1.274 13 C 0.145 3.855 14 C 0.067 3.933 15 H 0.054 0.946 16 C -0.147 4.147 17 C -0.139 4.139 18 C 0.033 3.967 19 O -0.391 6.391 20 H 0.060 0.940 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.049 0.951 24 H 0.032 0.968 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.248 0.752 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 -7.355 -8.438 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.018 3.982 4 N -0.318 5.318 5 C -0.369 4.369 6 H 0.058 0.942 7 C -0.225 4.225 8 N -0.566 5.566 9 Si 0.777 3.223 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.199 1.199 13 C 0.019 3.981 14 C 0.008 3.992 15 H 0.071 0.929 16 C -0.186 4.186 17 C -0.176 4.176 18 C -0.044 4.044 19 O -0.310 6.310 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.191 -7.204 -8.182 11.359 hybrid contribution 0.958 -0.151 0.678 1.183 sum -2.233 -7.355 -7.504 10.742 Atomic orbital electron populations 1.21661 0.94209 1.01821 1.01921 1.21972 0.96241 0.98593 1.00172 1.21038 0.83774 0.94706 0.98659 1.43887 1.00576 1.84935 1.02357 1.18908 1.05790 1.18002 0.94208 0.94219 1.25581 1.01972 0.94875 1.00085 1.70089 1.25781 1.16195 1.44575 0.85586 0.80047 0.77056 0.79638 1.21851 1.21868 1.19865 1.21071 0.98427 0.92643 0.85976 1.23795 0.92412 0.94255 0.88744 0.92856 1.23276 0.99924 0.97879 0.97486 1.23052 1.02307 0.96861 0.95398 1.23295 0.93917 0.95197 0.92017 1.88650 1.50516 1.59120 1.32755 0.92057 0.92947 0.91929 0.93253 0.94871 0.95294 0.93379 0.94274 0.91797 0.93714 0.88141 0.91704 0.89161 0.88534 0.93061 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.13 -4.82 6.23 30.59 0.19 -4.63 16 3 C 0.14 6.23 5.72 86.38 0.49 6.72 16 4 N -0.60 -30.97 2.42 -702.00 -1.70 -32.66 16 5 C -0.24 -13.84 8.99 84.03 0.76 -13.08 16 6 H 0.04 2.38 7.92 -2.91 -0.02 2.36 16 7 C -0.03 -1.68 4.95 84.86 0.42 -1.26 16 8 N -0.92 -55.80 11.48 21.65 0.25 -55.55 16 9 Si 0.95 47.93 29.60 68.60 2.03 49.96 16 10 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 11 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 13 C 0.15 6.98 5.09 86.38 0.44 7.42 16 14 C 0.07 2.72 3.70 31.26 0.12 2.84 16 15 H 0.05 2.09 6.60 -2.39 -0.02 2.08 16 16 C -0.15 -4.55 6.57 32.05 0.21 -4.34 16 17 C -0.14 -3.61 7.02 31.87 0.22 -3.39 16 18 C 0.03 1.11 7.80 72.47 0.56 1.67 16 19 O -0.39 -17.92 10.55 -148.98 -1.57 -19.49 16 20 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 23 H 0.05 1.82 6.60 -2.39 -0.02 1.80 16 24 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 26 H 0.05 1.90 7.83 -2.38 -0.02 1.88 16 27 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.06 3.59 5.52 -2.38 -0.01 3.57 16 29 H 0.04 1.98 7.86 -2.38 -0.02 1.96 16 30 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.06 2.15 8.06 -2.38 -0.02 2.13 16 32 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -66.82 281.40 4.17 -62.65 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 1.03 Total: 6.27 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 4.13 Total: -11.17 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -1.45 Total: -88.22 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -1.57 Total: -19.49 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -66.82 4.17 -62.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.920 kcal (2) G-P(sol) polarization free energy of solvation -66.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds