Wall clock time and date at job start Mon Mar 30 2020 03:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47086 * 2 1 4 4 N 1.46497 * 109.46845 * 179.97438 * 3 2 1 5 5 C 1.36941 * 120.00023 * 266.50657 * 4 3 2 6 6 H 1.08004 * 119.99926 * 146.70686 * 5 4 3 7 7 C 1.38811 * 119.99825 * 326.71282 * 5 4 3 8 8 N 1.31617 * 120.00206 * 337.09729 * 7 5 4 9 9 Si 1.86805 * 119.99914 * 157.10174 * 7 5 4 10 10 H 1.48502 * 109.47274 * 89.99247 * 9 7 5 11 11 H 1.48492 * 109.46981 * 209.99424 * 9 7 5 12 12 H 1.48500 * 109.46645 * 329.99521 * 9 7 5 13 13 C 1.46503 * 119.99983 * 86.51153 * 4 3 2 14 14 H 1.09000 * 110.53925 * 1.15731 * 13 4 3 15 15 C 1.54886 * 110.48718 * 238.54084 * 13 4 3 16 16 C 1.54879 * 102.91682 * 203.47011 * 15 13 4 17 17 C 1.54269 * 104.19592 * 37.85387 * 16 15 13 18 18 C 1.53873 * 106.59593 * 336.38717 * 17 16 15 19 19 H 1.09000 * 110.03297 * 240.71247 * 18 17 16 20 20 O 1.42903 * 110.03239 * 119.33438 * 18 17 16 21 21 H 1.09005 * 109.47078 * 60.00287 * 1 2 3 22 22 H 1.08998 * 109.47368 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47487 * 300.00321 * 1 2 3 24 24 H 1.08994 * 109.47079 * 239.99730 * 2 1 3 25 25 H 1.09002 * 109.46598 * 119.99528 * 2 1 3 26 26 H 1.09000 * 109.47220 * 59.99516 * 3 2 1 27 27 H 1.08996 * 109.46724 * 299.99890 * 3 2 1 28 28 H 0.96996 * 120.00166 * 180.02562 * 8 7 5 29 29 H 1.09006 * 110.75470 * 85.06190 * 15 13 4 30 30 H 1.09001 * 110.75751 * 321.88558 * 15 13 4 31 31 H 1.09001 * 110.48734 * 156.52889 * 16 15 13 32 32 H 1.08998 * 110.49112 * 279.04572 * 16 15 13 33 33 H 1.08995 * 110.03318 * 95.67170 * 17 16 15 34 34 H 1.08999 * 110.02914 * 217.10348 * 17 16 15 35 35 H 0.96703 * 114.00161 * 61.45421 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.5149 1.1846 6 1 5.1362 1.0071 1.2930 7 6 3.6655 2.2409 2.2455 8 7 2.7937 3.2007 2.0195 9 14 4.1982 1.8557 3.9941 10 1 5.3857 2.6768 4.3421 11 1 3.0886 2.1687 4.9299 12 1 4.5440 0.4155 4.1002 13 6 4.2380 1.3651 -1.2655 14 1 3.5458 1.3343 -2.1069 15 6 5.1648 0.1242 -1.2803 16 6 6.2461 0.5120 -2.3191 17 6 6.4826 2.0168 -2.0752 18 6 5.2066 2.5598 -1.4084 19 1 4.7589 3.3329 -2.0329 20 8 5.5166 3.0916 -0.1187 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 2.4280 3.7082 2.7608 29 1 4.6186 -0.7620 -1.6037 30 1 5.6115 -0.0361 -0.2990 31 1 7.1626 -0.0515 -2.1442 32 1 5.8812 0.3404 -3.3318 33 1 7.3381 2.1580 -1.4148 34 1 6.6542 2.5262 -3.0234 35 1 6.1378 3.8325 -0.1376 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045092686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:34 Heat of formation + Delta-G solvation = -35.179358 kcal Electronic energy + Delta-G solvation = -15492.171587 eV Core-core repulsion = 13104.614508 eV Total energy + Delta-G solvation = -2387.557079 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.18820 -35.14899 -33.67070 -32.16402 -30.50787 -27.09165 -26.45981 -25.34487 -22.42079 -20.20516 -19.92545 -19.10416 -16.48225 -16.14869 -14.94978 -14.35240 -14.01341 -13.81613 -13.42641 -13.04803 -12.69848 -12.34355 -11.85835 -11.49676 -11.13507 -10.94409 -10.75117 -10.64737 -10.53182 -10.42237 -10.31897 -10.15526 -9.81026 -9.77647 -9.37042 -9.21497 -8.75245 -8.16243 -6.33420 -5.50373 -2.95190 3.50712 3.57639 3.60452 4.67690 5.13188 5.31417 5.34166 5.53936 5.65958 5.84436 5.92636 6.00466 6.05371 6.17392 6.20559 6.22630 6.28783 6.49194 6.52072 6.61960 6.67251 6.73248 6.77759 6.92616 6.99638 7.04490 7.15855 7.40140 7.93551 8.10759 8.73299 8.90022 9.46620 10.08802 10.63739 11.53277 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021932 B = 0.014878 C = 0.010516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.395878 B = 1881.531564 C = 2662.081258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.142 3.858 4 N -0.568 5.568 5 C -0.193 4.193 6 H 0.061 0.939 7 C 0.004 3.996 8 N -0.893 5.893 9 Si 0.887 3.113 10 H -0.291 1.291 11 H -0.294 1.294 12 H -0.283 1.283 13 C 0.176 3.824 14 H 0.057 0.943 15 C -0.135 4.135 16 C -0.120 4.120 17 C -0.156 4.156 18 C 0.085 3.915 19 H 0.030 0.970 20 O -0.489 6.489 21 H 0.043 0.957 22 H 0.038 0.962 23 H 0.050 0.950 24 H 0.037 0.963 25 H 0.056 0.944 26 H 0.103 0.897 27 H 0.015 0.985 28 H 0.246 0.754 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 -3.295 -7.200 8.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.015 3.985 4 N -0.285 5.285 5 C -0.323 4.323 6 H 0.078 0.922 7 C -0.193 4.193 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.218 1.218 11 H -0.221 1.221 12 H -0.209 1.209 13 C 0.067 3.933 14 H 0.075 0.925 15 C -0.174 4.174 16 C -0.158 4.158 17 C -0.195 4.195 18 C 0.022 3.978 19 H 0.048 0.952 20 O -0.290 6.290 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.120 0.880 27 H 0.033 0.967 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.814 -3.646 -6.868 7.984 hybrid contribution 0.761 0.365 0.575 1.021 sum 2.575 -3.280 -6.293 7.549 Atomic orbital electron populations 1.21696 0.97708 0.99772 1.01053 1.22134 0.93528 1.01901 1.00441 1.21079 0.83499 0.92026 1.01849 1.43785 1.00538 1.83627 1.00566 1.18728 1.03449 1.22458 0.87673 0.92189 1.24867 1.00509 0.95656 0.98261 1.70000 1.34133 1.20281 1.29421 0.86537 0.77453 0.77982 0.86256 1.21826 1.22062 1.20913 1.21386 0.91217 0.90812 0.89879 0.92531 1.22913 0.96865 0.98714 0.98923 1.22202 0.99000 0.95709 0.98886 1.22960 0.99840 0.96713 0.99950 1.23029 0.93404 0.95999 0.85348 0.95171 1.87523 1.65866 1.50320 1.25277 0.93757 0.94307 0.93068 0.94372 0.92546 0.87957 0.96697 0.94385 0.93058 0.90637 0.92780 0.92656 0.91678 0.93069 0.82739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.91 37.16 0.37 -2.13 16 2 C -0.14 -2.87 6.26 -26.73 -0.17 -3.04 16 3 C 0.14 3.39 5.23 -4.04 -0.02 3.37 16 4 N -0.57 -14.09 2.43 -163.66 -0.40 -14.48 16 5 C -0.19 -5.26 6.13 -15.06 -0.09 -5.35 16 6 H 0.06 1.69 6.66 -52.48 -0.35 1.34 16 7 C 0.00 0.12 4.93 -17.43 -0.09 0.04 16 8 N -0.89 -26.18 11.31 55.49 0.63 -25.55 16 9 Si 0.89 22.34 29.61 -169.99 -5.03 17.31 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 C 0.18 3.73 3.40 -66.17 -0.22 3.51 16 14 H 0.06 1.14 7.90 -51.93 -0.41 0.73 16 15 C -0.13 -2.54 6.42 -24.75 -0.16 -2.70 16 16 C -0.12 -1.88 6.83 -25.08 -0.17 -2.05 16 17 C -0.16 -2.53 6.60 -25.61 -0.17 -2.70 16 18 C 0.08 1.69 4.21 -25.51 -0.11 1.58 16 19 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 20 O -0.49 -11.18 10.04 -35.23 -0.35 -11.53 16 21 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.10 2.79 5.29 -51.93 -0.27 2.52 16 27 H 0.01 0.34 8.01 -51.93 -0.42 -0.07 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.60 6.52 -51.93 -0.34 1.27 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.05 7.95 -51.93 -0.41 0.64 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.33 6.15 9.10 45.56 0.41 6.57 16 LS Contribution 275.81 15.07 4.16 4.16 Total: -1.00 -29.85 275.81 -6.98 -36.83 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.15 Total: 2.74 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.83 Total: -9.47 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.23 Total: -40.04 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.35 Total: -11.53 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.85 -6.98 -36.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.648 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds