Wall clock time and date at job start Mon Mar 30 2020 03:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47086 * 2 1 4 4 N 1.46497 * 109.46845 * 179.97438 * 3 2 1 5 5 C 1.36941 * 120.00023 * 266.50657 * 4 3 2 6 6 H 1.08004 * 119.99926 * 146.70686 * 5 4 3 7 7 C 1.38811 * 119.99825 * 326.71282 * 5 4 3 8 8 N 1.31617 * 120.00206 * 337.09729 * 7 5 4 9 9 Si 1.86805 * 119.99914 * 157.10174 * 7 5 4 10 10 H 1.48502 * 109.47274 * 89.99247 * 9 7 5 11 11 H 1.48492 * 109.46981 * 209.99424 * 9 7 5 12 12 H 1.48500 * 109.46645 * 329.99521 * 9 7 5 13 13 C 1.46503 * 119.99983 * 86.51153 * 4 3 2 14 14 H 1.09000 * 110.53925 * 1.15731 * 13 4 3 15 15 C 1.54886 * 110.48718 * 238.54084 * 13 4 3 16 16 C 1.54879 * 102.91682 * 203.47011 * 15 13 4 17 17 C 1.54269 * 104.19592 * 37.85387 * 16 15 13 18 18 C 1.53873 * 106.59593 * 336.38717 * 17 16 15 19 19 H 1.09000 * 110.03297 * 240.71247 * 18 17 16 20 20 O 1.42903 * 110.03239 * 119.33438 * 18 17 16 21 21 H 1.09005 * 109.47078 * 60.00287 * 1 2 3 22 22 H 1.08998 * 109.47368 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47487 * 300.00321 * 1 2 3 24 24 H 1.08994 * 109.47079 * 239.99730 * 2 1 3 25 25 H 1.09002 * 109.46598 * 119.99528 * 2 1 3 26 26 H 1.09000 * 109.47220 * 59.99516 * 3 2 1 27 27 H 1.08996 * 109.46724 * 299.99890 * 3 2 1 28 28 H 0.96996 * 120.00166 * 180.02562 * 8 7 5 29 29 H 1.09006 * 110.75470 * 85.06190 * 15 13 4 30 30 H 1.09001 * 110.75751 * 321.88558 * 15 13 4 31 31 H 1.09001 * 110.48734 * 156.52889 * 16 15 13 32 32 H 1.08998 * 110.49112 * 279.04572 * 16 15 13 33 33 H 1.08995 * 110.03318 * 95.67170 * 17 16 15 34 34 H 1.08999 * 110.02914 * 217.10348 * 17 16 15 35 35 H 0.96703 * 114.00161 * 61.45421 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.5149 1.1846 6 1 5.1362 1.0071 1.2930 7 6 3.6655 2.2409 2.2455 8 7 2.7937 3.2007 2.0195 9 14 4.1982 1.8557 3.9941 10 1 5.3857 2.6768 4.3421 11 1 3.0886 2.1687 4.9299 12 1 4.5440 0.4155 4.1002 13 6 4.2380 1.3651 -1.2655 14 1 3.5458 1.3343 -2.1069 15 6 5.1648 0.1242 -1.2803 16 6 6.2461 0.5120 -2.3191 17 6 6.4826 2.0168 -2.0752 18 6 5.2066 2.5598 -1.4084 19 1 4.7589 3.3329 -2.0329 20 8 5.5166 3.0916 -0.1187 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 2.4280 3.7082 2.7608 29 1 4.6186 -0.7620 -1.6037 30 1 5.6115 -0.0361 -0.2990 31 1 7.1626 -0.0515 -2.1442 32 1 5.8812 0.3404 -3.3318 33 1 7.3381 2.1580 -1.4148 34 1 6.6542 2.5262 -3.0234 35 1 6.1378 3.8325 -0.1376 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:32 Heat of formation + Delta-G solvation = -54.450395 kcal Electronic energy + Delta-G solvation = -15493.007242 eV Core-core repulsion = 13104.614508 eV Total energy + Delta-G solvation = -2388.392734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.79784 -36.95019 -35.29472 -33.98074 -32.35539 -28.59234 -28.06309 -27.25214 -24.19892 -21.89923 -21.35980 -20.83903 -18.28942 -17.94138 -16.79365 -16.07833 -15.68255 -15.41764 -15.12957 -14.68371 -14.38394 -13.95288 -13.43771 -13.17294 -12.94885 -12.76079 -12.57731 -12.30002 -12.18478 -12.05241 -11.86776 -11.73474 -11.58431 -11.39579 -11.19495 -10.95332 -10.36634 -10.24427 -8.34334 -7.59069 -5.06134 1.47958 1.50490 1.57905 2.64957 3.37551 3.61157 3.94035 3.95922 4.07812 4.32606 4.37569 4.52957 4.58227 4.64573 4.73519 4.84893 4.91034 4.93552 5.09997 5.15035 5.16905 5.24233 5.26002 5.31126 5.41682 5.53844 5.61065 5.65271 5.91734 5.99480 6.66979 7.33012 7.43427 8.09593 8.58909 9.41008 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021932 B = 0.014878 C = 0.010516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.395878 B = 1881.531564 C = 2662.081258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.141 3.859 4 N -0.583 5.583 5 C -0.175 4.175 6 H 0.048 0.952 7 C -0.046 4.046 8 N -0.923 5.923 9 Si 0.936 3.064 10 H -0.293 1.293 11 H -0.299 1.299 12 H -0.279 1.279 13 C 0.160 3.840 14 H 0.067 0.933 15 C -0.128 4.128 16 C -0.110 4.110 17 C -0.145 4.145 18 C 0.078 3.922 19 H 0.029 0.971 20 O -0.527 6.527 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.015 0.985 28 H 0.238 0.762 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 -4.403 -8.860 10.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.014 3.986 4 N -0.302 5.302 5 C -0.306 4.306 6 H 0.066 0.934 7 C -0.240 4.240 8 N -0.572 5.572 9 Si 0.767 3.233 10 H -0.221 1.221 11 H -0.226 1.226 12 H -0.205 1.205 13 C 0.053 3.947 14 H 0.085 0.915 15 C -0.168 4.168 16 C -0.148 4.148 17 C -0.183 4.183 18 C 0.017 3.983 19 H 0.047 0.953 20 O -0.329 6.329 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.034 0.966 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.501 -4.773 -8.551 10.107 hybrid contribution 0.576 0.706 0.991 1.346 sum 3.077 -4.067 -7.560 9.119 Atomic orbital electron populations 1.21633 0.95100 1.01557 1.01255 1.21937 0.95773 0.99119 0.99940 1.21009 0.83442 0.93907 1.00193 1.43965 1.00975 1.83897 1.01333 1.18702 1.02588 1.20623 0.88716 0.93422 1.25357 1.01587 0.96215 1.00822 1.70129 1.35900 1.21661 1.29467 0.85742 0.76656 0.77711 0.83157 1.22066 1.22562 1.20494 1.21688 0.91932 0.92584 0.88544 0.91477 1.22775 0.97369 0.97975 0.98639 1.22193 0.98548 0.95132 0.98953 1.22826 0.97468 0.97215 1.00781 1.23067 0.95195 0.95532 0.84525 0.95281 1.87391 1.66754 1.51377 1.27411 0.92411 0.91687 0.94066 0.93100 0.94636 0.91297 0.96639 0.95216 0.92029 0.93609 0.91097 0.90164 0.91734 0.90243 0.80831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.91 71.98 0.71 -3.81 16 2 C -0.13 -5.14 6.26 30.60 0.19 -4.95 16 3 C 0.14 6.78 5.23 86.38 0.45 7.23 16 4 N -0.58 -29.03 2.43 -671.70 -1.63 -30.66 16 5 C -0.18 -9.67 6.13 84.03 0.51 -9.15 16 6 H 0.05 2.73 6.66 -2.91 -0.02 2.71 16 7 C -0.05 -2.62 4.93 84.86 0.42 -2.20 16 8 N -0.92 -55.67 11.31 21.65 0.24 -55.43 16 9 Si 0.94 46.91 29.61 68.60 2.03 48.94 16 10 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 11 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 12 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 13 C 0.16 6.60 3.40 46.13 0.16 6.76 16 14 H 0.07 2.59 7.90 -2.39 -0.02 2.57 16 15 C -0.13 -4.59 6.42 31.88 0.20 -4.39 16 16 C -0.11 -3.04 6.83 31.67 0.22 -2.82 16 17 C -0.14 -4.23 6.60 31.32 0.21 -4.03 16 18 C 0.08 3.02 4.21 31.39 0.13 3.15 16 19 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 20 O -0.53 -23.99 10.04 -148.98 -1.50 -25.49 16 21 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 22 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 3.86 5.29 -2.39 -0.01 3.85 16 27 H 0.02 0.72 8.01 -2.39 -0.02 0.70 16 28 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.05 1.91 6.52 -2.39 -0.02 1.89 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.91 7.95 -2.39 -0.02 1.89 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.35 12.88 9.10 -74.06 -0.67 12.21 16 Total: -1.00 -64.69 275.81 2.74 -61.95 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.38 Total: 14.89 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 3.21 Total: -14.20 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -1.39 Total: -86.09 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -1.50 Total: -25.49 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -64.69 2.74 -61.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.501 kcal (2) G-P(sol) polarization free energy of solvation -64.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds