Wall clock time and date at job start Mon Mar 30 2020 03:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47018 * 2 1 4 4 N 1.46499 * 109.46979 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99664 * 269.99589 * 4 3 2 6 6 H 1.07997 * 119.99581 * 141.95529 * 5 4 3 7 7 C 1.38811 * 120.00376 * 321.94822 * 5 4 3 8 8 N 1.31611 * 120.00219 * 156.90588 * 7 5 4 9 9 Si 1.86805 * 119.99916 * 336.90788 * 7 5 4 10 10 H 1.48508 * 109.46830 * 95.36104 * 9 7 5 11 11 H 1.48500 * 109.47129 * 215.36525 * 9 7 5 12 12 H 1.48499 * 109.46896 * 335.36673 * 9 7 5 13 13 C 1.46498 * 120.00192 * 90.00269 * 4 3 2 14 14 H 1.09002 * 110.54249 * 7.71862 * 13 4 3 15 15 C 1.54891 * 110.49136 * 130.33506 * 13 4 3 16 16 C 1.54880 * 102.75187 * 156.61845 * 15 13 4 17 17 C 1.54270 * 104.19547 * 322.05964 * 16 15 13 18 18 C 1.53874 * 106.59876 * 23.60895 * 17 16 15 19 19 H 1.08996 * 110.02958 * 240.71540 * 18 17 16 20 20 O 1.42899 * 110.03039 * 119.28718 * 18 17 16 21 21 H 1.09004 * 109.46787 * 299.99787 * 1 2 3 22 22 H 1.08994 * 109.47059 * 59.99838 * 1 2 3 23 23 H 1.08997 * 109.46639 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47506 * 240.00179 * 2 1 3 25 25 H 1.08994 * 109.47582 * 120.00108 * 2 1 3 26 26 H 1.08997 * 109.47219 * 60.00081 * 3 2 1 27 27 H 1.09002 * 109.46790 * 300.00271 * 3 2 1 28 28 H 0.96999 * 120.00156 * 180.02562 * 8 7 5 29 29 H 1.09001 * 110.75338 * 38.30025 * 15 13 4 30 30 H 1.08998 * 110.91466 * 275.00943 * 15 13 4 31 31 H 1.08995 * 110.49035 * 203.38233 * 16 15 13 32 32 H 1.09004 * 110.49028 * 80.73479 * 16 15 13 33 33 H 1.09002 * 110.03007 * 264.32332 * 17 16 15 34 34 H 1.09005 * 110.03212 * 142.89864 * 17 16 15 35 35 H 0.96694 * 114.00092 * 61.45272 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 5.0980 0.8660 1.2840 7 6 3.7178 2.1833 2.2597 8 7 4.0670 1.8593 3.4866 9 14 2.5865 3.6402 1.9645 10 1 1.1734 3.2067 2.1084 11 1 2.8812 4.7048 2.9570 12 1 2.8055 4.1671 0.5936 13 6 4.2370 1.4428 -1.2696 14 1 3.5520 1.5800 -2.1063 15 6 5.3214 2.5488 -1.2698 16 6 6.3334 2.0350 -2.3237 17 6 6.3665 0.5085 -2.1038 18 6 5.0336 0.1319 -1.4336 19 1 5.2199 -0.3163 -0.4577 20 8 4.3098 -0.7804 -2.2618 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.7366 2.3768 4.2376 29 1 5.7916 2.6289 -0.2897 30 1 4.8999 3.5069 -1.5739 31 1 7.3187 2.4670 -2.1489 32 1 5.9870 2.2679 -3.3307 33 1 7.1997 0.2430 -1.4532 34 1 6.4614 -0.0047 -3.0609 35 1 4.7687 -1.6166 -2.4202 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045092687.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:38 Heat of formation + Delta-G solvation = -45.038351 kcal Electronic energy + Delta-G solvation = -15386.688084 eV Core-core repulsion = 12998.703487 eV Total energy + Delta-G solvation = -2387.984597 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.46250 -35.68447 -34.22955 -32.37949 -31.02776 -27.34165 -26.73605 -25.49756 -22.55064 -20.70917 -20.12789 -19.26804 -16.69979 -16.22666 -15.58210 -15.00073 -14.52849 -13.92484 -13.49963 -12.88960 -12.76595 -12.67420 -12.07425 -12.04069 -11.89409 -11.29291 -11.08493 -10.82626 -10.69700 -10.56726 -10.35434 -10.24324 -9.98840 -9.79892 -9.61325 -9.40701 -9.20265 -8.44782 -6.73635 -5.98070 -3.38058 3.34662 3.49007 3.55682 4.55637 4.74585 4.96886 5.18672 5.32916 5.47089 5.52774 5.79621 5.83807 6.02521 6.08883 6.10911 6.16603 6.20532 6.26262 6.38848 6.41516 6.54717 6.55128 6.61174 6.67615 6.69123 6.91672 7.06388 7.13840 7.25222 8.09243 8.22092 8.40869 9.04118 9.75213 10.18454 11.17452 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.014120 C = 0.010725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.201283 B = 1982.596727 C = 2610.030361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.140 3.860 4 N -0.597 5.597 5 C -0.263 4.263 6 H 0.077 0.923 7 C 0.039 3.961 8 N -0.900 5.900 9 Si 0.875 3.125 10 H -0.286 1.286 11 H -0.303 1.303 12 H -0.269 1.269 13 C 0.183 3.817 14 H 0.064 0.936 15 C -0.130 4.130 16 C -0.120 4.120 17 C -0.153 4.153 18 C 0.081 3.919 19 H 0.068 0.932 20 O -0.567 6.567 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.034 0.966 28 H 0.262 0.738 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 -1.935 -10.081 10.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.015 3.985 4 N -0.317 5.317 5 C -0.391 4.391 6 H 0.094 0.906 7 C -0.162 4.162 8 N -0.540 5.540 9 Si 0.705 3.295 10 H -0.214 1.214 11 H -0.231 1.231 12 H -0.193 1.193 13 C 0.075 3.925 14 H 0.082 0.918 15 C -0.169 4.169 16 C -0.158 4.158 17 C -0.191 4.191 18 C 0.020 3.980 19 H 0.086 0.914 20 O -0.371 6.371 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.220 -1.384 -9.873 9.972 hybrid contribution -0.150 0.329 0.053 0.366 sum -0.370 -1.055 -9.820 9.883 Atomic orbital electron populations 1.21746 0.97648 1.00439 1.00806 1.22030 0.93445 1.00168 1.02270 1.21203 0.84223 0.94410 0.98688 1.44167 1.00221 1.85699 1.01632 1.18583 1.09659 1.23778 0.87116 0.90589 1.25434 0.97889 0.97689 0.95154 1.69880 1.46883 1.39415 0.97871 0.86948 0.80273 0.84405 0.77859 1.21398 1.23135 1.19324 1.21097 0.92473 0.90214 0.88730 0.91793 1.22801 0.96497 0.97900 0.99736 1.22232 0.99373 0.95134 0.99086 1.22825 0.98831 0.97273 1.00198 1.23290 0.90323 0.92102 0.92276 0.91367 1.86536 1.48884 1.29504 1.72216 0.93369 0.93634 0.93637 0.92216 0.91761 0.93107 0.94731 0.92777 0.89372 0.92465 0.92375 0.92416 0.92014 0.92089 0.79268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 37.16 0.37 -2.15 16 2 C -0.14 -2.84 6.26 -26.73 -0.17 -3.01 16 3 C 0.14 3.16 4.52 -4.04 -0.02 3.14 16 4 N -0.60 -14.19 2.10 -163.78 -0.34 -14.53 16 5 C -0.26 -7.15 7.99 -15.06 -0.12 -7.27 16 6 H 0.08 2.22 7.29 -52.49 -0.38 1.84 16 7 C 0.04 1.11 5.29 -17.43 -0.09 1.02 16 8 N -0.90 -27.19 13.97 55.49 0.78 -26.41 16 9 Si 0.87 22.33 25.13 -169.99 -4.27 18.05 16 10 H -0.29 -7.17 6.66 56.52 0.38 -6.79 16 11 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.18 3.76 3.13 -66.27 -0.21 3.56 16 14 H 0.06 1.30 7.76 -51.93 -0.40 0.90 16 15 C -0.13 -2.48 6.36 -24.74 -0.16 -2.64 16 16 C -0.12 -1.86 6.83 -25.08 -0.17 -2.03 16 17 C -0.15 -2.36 6.60 -25.61 -0.17 -2.53 16 18 C 0.08 1.50 3.89 -25.61 -0.10 1.40 16 19 H 0.07 1.44 6.85 -51.93 -0.36 1.08 16 20 O -0.57 -9.78 13.22 -35.23 -0.47 -10.24 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 26 H 0.05 1.24 3.39 -51.93 -0.18 1.07 16 27 H 0.03 0.72 7.90 -51.93 -0.41 0.31 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.09 1.89 6.99 -51.93 -0.36 1.53 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.83 7.96 -51.93 -0.41 0.42 16 35 H 0.36 4.57 9.10 45.56 0.41 4.99 16 LS Contribution 274.89 15.07 4.14 4.14 Total: -1.00 -29.99 274.89 -6.05 -36.04 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.05 Total: 3.46 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -0.83 Total: -10.51 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.43 Total: -40.94 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.47 Total: -10.24 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.27 Total: 18.05 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.99 -6.05 -36.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092687.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.998 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds