Wall clock time and date at job start Mon Mar 30 2020 03:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47018 * 2 1 4 4 N 1.46499 * 109.46979 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99664 * 269.99589 * 4 3 2 6 6 H 1.07997 * 119.99581 * 141.95529 * 5 4 3 7 7 C 1.38811 * 120.00376 * 321.94822 * 5 4 3 8 8 N 1.31611 * 120.00219 * 156.90588 * 7 5 4 9 9 Si 1.86805 * 119.99916 * 336.90788 * 7 5 4 10 10 H 1.48508 * 109.46830 * 95.36104 * 9 7 5 11 11 H 1.48500 * 109.47129 * 215.36525 * 9 7 5 12 12 H 1.48499 * 109.46896 * 335.36673 * 9 7 5 13 13 C 1.46498 * 120.00192 * 90.00269 * 4 3 2 14 14 H 1.09002 * 110.54249 * 7.71862 * 13 4 3 15 15 C 1.54891 * 110.49136 * 130.33506 * 13 4 3 16 16 C 1.54880 * 102.75187 * 156.61845 * 15 13 4 17 17 C 1.54270 * 104.19547 * 322.05964 * 16 15 13 18 18 C 1.53874 * 106.59876 * 23.60895 * 17 16 15 19 19 H 1.08996 * 110.02958 * 240.71540 * 18 17 16 20 20 O 1.42899 * 110.03039 * 119.28718 * 18 17 16 21 21 H 1.09004 * 109.46787 * 299.99787 * 1 2 3 22 22 H 1.08994 * 109.47059 * 59.99838 * 1 2 3 23 23 H 1.08997 * 109.46639 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47506 * 240.00179 * 2 1 3 25 25 H 1.08994 * 109.47582 * 120.00108 * 2 1 3 26 26 H 1.08997 * 109.47219 * 60.00081 * 3 2 1 27 27 H 1.09002 * 109.46790 * 300.00271 * 3 2 1 28 28 H 0.96999 * 120.00156 * 180.02562 * 8 7 5 29 29 H 1.09001 * 110.75338 * 38.30025 * 15 13 4 30 30 H 1.08998 * 110.91466 * 275.00943 * 15 13 4 31 31 H 1.08995 * 110.49035 * 203.38233 * 16 15 13 32 32 H 1.09004 * 110.49028 * 80.73479 * 16 15 13 33 33 H 1.09002 * 110.03007 * 264.32332 * 17 16 15 34 34 H 1.09005 * 110.03212 * 142.89864 * 17 16 15 35 35 H 0.96694 * 114.00092 * 61.45272 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 5.0980 0.8660 1.2840 7 6 3.7178 2.1833 2.2597 8 7 4.0670 1.8593 3.4866 9 14 2.5865 3.6402 1.9645 10 1 1.1734 3.2067 2.1084 11 1 2.8812 4.7048 2.9570 12 1 2.8055 4.1671 0.5936 13 6 4.2370 1.4428 -1.2696 14 1 3.5520 1.5800 -2.1063 15 6 5.3214 2.5488 -1.2698 16 6 6.3334 2.0350 -2.3237 17 6 6.3665 0.5085 -2.1038 18 6 5.0336 0.1319 -1.4336 19 1 5.2199 -0.3163 -0.4577 20 8 4.3098 -0.7804 -2.2618 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.7366 2.3768 4.2376 29 1 5.7916 2.6289 -0.2897 30 1 4.8999 3.5069 -1.5739 31 1 7.3187 2.4670 -2.1489 32 1 5.9870 2.2679 -3.3307 33 1 7.1997 0.2430 -1.4532 34 1 6.4614 -0.0047 -3.0609 35 1 4.7687 -1.6166 -2.4202 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092687.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:36 Heat of formation + Delta-G solvation = -65.967366 kcal Electronic energy + Delta-G solvation = -15387.595634 eV Core-core repulsion = 12998.703487 eV Total energy + Delta-G solvation = -2388.892147 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.00035 -37.37324 -35.65086 -34.28651 -32.85932 -28.84085 -28.21128 -27.38240 -24.32011 -22.39154 -21.50125 -20.96716 -18.48795 -17.89422 -17.37619 -16.63689 -16.07377 -15.55580 -15.16677 -14.76147 -14.46190 -14.18719 -13.77351 -13.52948 -13.33728 -13.04146 -12.70057 -12.57428 -12.32318 -12.10715 -11.99590 -11.91084 -11.64350 -11.32634 -11.26880 -11.24410 -10.72776 -10.53065 -8.68764 -8.17992 -5.54052 1.30118 1.39945 1.51563 2.43825 3.02336 3.27728 3.52176 3.85705 4.03183 4.17250 4.23965 4.35653 4.54838 4.59437 4.63285 4.69202 4.76327 4.81690 4.87797 4.96938 5.08103 5.12399 5.18101 5.19139 5.33412 5.38975 5.41708 5.54108 5.61752 5.99310 6.20645 7.01119 7.04188 7.67457 8.11400 9.01856 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.014120 C = 0.010725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.201283 B = 1982.596727 C = 2610.030361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.132 3.868 4 N -0.608 5.608 5 C -0.238 4.238 6 H 0.042 0.958 7 C -0.016 4.016 8 N -0.948 5.948 9 Si 0.934 3.066 10 H -0.278 1.278 11 H -0.310 1.310 12 H -0.259 1.259 13 C 0.172 3.828 14 H 0.073 0.927 15 C -0.131 4.131 16 C -0.110 4.110 17 C -0.145 4.145 18 C 0.088 3.912 19 H 0.030 0.970 20 O -0.575 6.575 21 H 0.042 0.958 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.057 0.943 28 H 0.261 0.739 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 -1.694 -12.775 12.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.007 3.993 4 N -0.329 5.329 5 C -0.368 4.368 6 H 0.059 0.941 7 C -0.212 4.212 8 N -0.593 5.593 9 Si 0.763 3.237 10 H -0.206 1.206 11 H -0.239 1.239 12 H -0.183 1.183 13 C 0.065 3.935 14 H 0.091 0.909 15 C -0.171 4.171 16 C -0.148 4.148 17 C -0.183 4.183 18 C 0.027 3.973 19 H 0.049 0.951 20 O -0.382 6.382 21 H 0.061 0.939 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.839 -1.160 -12.620 12.701 hybrid contribution 0.073 0.137 0.816 0.831 sum -0.767 -1.024 -11.804 11.873 Atomic orbital electron populations 1.21695 0.94636 1.02092 1.01577 1.21875 0.96055 0.98300 1.00668 1.21334 0.83468 0.95755 0.98751 1.44290 1.00957 1.85982 1.01698 1.18390 1.08220 1.21753 0.88405 0.94055 1.25968 1.00312 1.00083 0.94874 1.69993 1.49657 1.40888 0.98733 0.85986 0.78913 0.81062 0.77740 1.20553 1.23894 1.18277 1.21365 0.93005 0.91930 0.87209 0.90875 1.22741 0.96974 0.97901 0.99435 1.22213 0.99140 0.94665 0.98780 1.22755 0.96667 0.97649 1.01235 1.22959 0.91714 0.91207 0.91393 0.95147 1.86470 1.49542 1.30691 1.71490 0.93885 0.91534 0.91633 0.92043 0.95034 0.95026 0.92420 0.92991 0.92652 0.91934 0.90708 0.90194 0.91871 0.89251 0.76783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.91 71.98 0.71 -3.76 16 2 C -0.13 -5.14 6.26 30.60 0.19 -4.95 16 3 C 0.13 5.78 4.52 86.38 0.39 6.17 16 4 N -0.61 -28.86 2.10 -672.08 -1.41 -30.27 16 5 C -0.24 -13.33 7.99 84.03 0.67 -12.66 16 6 H 0.04 2.57 7.29 -2.91 -0.02 2.55 16 7 C -0.02 -0.94 5.29 84.86 0.45 -0.49 16 8 N -0.95 -59.49 13.97 21.65 0.30 -59.19 16 9 Si 0.93 46.77 25.13 68.60 1.72 48.50 16 10 H -0.28 -13.44 6.66 99.48 0.66 -12.78 16 11 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 12 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 13 C 0.17 6.85 3.13 46.07 0.14 6.99 16 14 H 0.07 2.79 7.76 -2.39 -0.02 2.77 16 15 C -0.13 -4.83 6.36 31.88 0.20 -4.63 16 16 C -0.11 -3.05 6.83 31.67 0.22 -2.83 16 17 C -0.14 -4.08 6.60 31.32 0.21 -3.87 16 18 C 0.09 3.17 3.89 31.32 0.12 3.29 16 19 H 0.03 1.32 6.85 -2.39 -0.02 1.30 16 20 O -0.57 -18.49 13.22 -148.98 -1.97 -20.46 16 21 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 22 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.03 1.52 3.39 -2.39 -0.01 1.51 16 27 H 0.06 2.26 7.90 -2.39 -0.02 2.24 16 28 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.05 2.39 6.99 -2.39 -0.02 2.37 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 2.05 7.96 -2.38 -0.02 2.03 16 35 H 0.38 8.69 9.10 -74.06 -0.67 8.01 16 Total: -1.00 -65.94 274.89 2.29 -63.65 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.34 Total: 14.52 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 3.31 Total: -16.75 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -1.11 Total: -89.45 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -1.97 Total: -20.46 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.72 Total: 48.50 kcal Total: -65.94 2.29 -63.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092687.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.318 kcal (2) G-P(sol) polarization free energy of solvation -65.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds