Wall clock time and date at job start Mon Mar 30 2020 03:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47161 * 2 1 4 4 N 1.46500 * 109.47302 * 183.25291 * 3 2 1 5 5 C 1.36934 * 119.99959 * 263.34837 * 4 3 2 6 6 H 1.08005 * 119.99729 * 193.26924 * 5 4 3 7 7 C 1.38804 * 120.00159 * 13.26594 * 5 4 3 8 8 N 1.31617 * 120.00327 * 13.39677 * 7 5 4 9 9 Si 1.86805 * 120.00247 * 193.39438 * 7 5 4 10 10 H 1.48504 * 109.46569 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.47243 * 119.99937 * 9 7 5 12 12 H 1.48502 * 109.47099 * 240.00537 * 9 7 5 13 13 C 1.46496 * 119.99740 * 83.34345 * 4 3 2 14 14 C 1.53008 * 109.47221 * 92.81229 * 13 4 3 15 15 H 1.09001 * 110.82757 * 309.45182 * 14 13 4 16 16 C 1.54807 * 110.91035 * 185.80590 * 14 13 4 17 17 C 1.54098 * 104.30545 * 220.98943 * 16 14 13 18 18 O 1.43749 * 107.29435 * 357.90195 * 17 16 14 19 19 C 1.44383 * 106.97255 * 26.51318 * 18 17 16 20 20 H 1.08999 * 109.46827 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47126 * 300.00005 * 1 2 3 22 22 H 1.08992 * 109.46992 * 59.99899 * 1 2 3 23 23 H 1.09002 * 109.47126 * 239.99995 * 2 1 3 24 24 H 1.09002 * 109.47299 * 119.99655 * 2 1 3 25 25 H 1.09002 * 109.47132 * 63.25412 * 3 2 1 26 26 H 1.09002 * 109.47221 * 303.25477 * 3 2 1 27 27 H 0.96996 * 120.00830 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47782 * 332.81382 * 13 4 3 29 29 H 1.09000 * 109.47475 * 212.80761 * 13 4 3 30 30 H 1.08998 * 110.48916 * 102.24433 * 16 14 13 31 31 H 1.09004 * 110.48597 * 339.72505 * 16 14 13 32 32 H 1.08996 * 109.88182 * 117.32565 * 17 16 14 33 33 H 1.09001 * 109.88029 * 238.48069 * 17 16 14 34 34 H 1.09005 * 110.61492 * 78.44364 * 19 18 17 35 35 H 1.08993 * 110.61574 * 201.43492 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5029 1.4433 -0.0784 5 6 4.2497 1.5587 1.0636 6 1 5.3060 1.7742 0.9986 7 6 3.6491 1.3989 2.3047 8 7 2.4414 0.8828 2.3899 9 14 4.5549 1.9163 3.8544 10 1 5.8863 2.4640 3.4898 11 1 3.7688 2.9580 4.5628 12 1 4.7298 0.7387 4.7421 13 6 4.1668 1.3205 -1.3785 14 6 4.4528 2.7152 -1.9389 15 1 3.5563 3.3346 -1.9131 16 6 5.0223 2.6272 -3.3758 17 6 6.1383 3.6893 -3.4087 18 8 6.1472 4.3397 -2.1269 19 6 5.6179 3.3955 -1.1714 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.7251 1.9392 0.9177 26 1 1.6298 1.9729 -0.8594 27 1 2.0214 0.7714 3.2571 28 1 3.5194 0.7779 -2.0674 29 1 5.1046 0.7782 -1.2579 30 1 4.2495 2.8629 -4.1075 31 1 5.4339 1.6354 -3.5629 32 1 7.1008 3.2101 -3.5878 33 1 5.9333 4.4182 -4.1928 34 1 6.3755 2.6611 -0.8976 35 1 5.2456 3.9123 -0.2870 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045092713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:30 Heat of formation + Delta-G solvation = -32.312062 kcal Electronic energy + Delta-G solvation = -15077.845544 eV Core-core repulsion = 12690.412800 eV Total energy + Delta-G solvation = -2387.432744 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.94355 -36.15297 -32.83840 -31.79505 -30.47110 -28.56110 -25.53991 -25.19115 -22.33716 -21.47159 -20.30590 -19.31597 -16.87251 -16.05368 -15.19057 -14.88566 -14.58581 -13.77649 -13.55323 -13.16563 -12.97306 -12.48200 -12.20506 -11.71945 -11.28247 -11.21473 -11.08076 -10.76524 -10.67787 -10.40019 -10.33463 -10.12611 -9.95734 -9.79132 -9.62324 -9.27282 -9.18631 -8.31897 -6.75393 -5.66675 -3.10344 3.39219 3.47704 3.48420 4.41261 4.51254 5.02881 5.17965 5.31256 5.42641 5.57916 5.72540 5.77893 6.04124 6.07870 6.17221 6.23789 6.24929 6.34757 6.47174 6.55950 6.56506 6.63812 6.78274 6.95045 6.98883 7.21752 7.31399 7.36838 7.69638 7.89950 8.15956 8.45601 9.30481 9.91048 10.36323 11.32787 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024225 B = 0.011381 C = 0.008101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.562072 B = 2459.752153 C = 3455.701382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C 0.171 3.829 4 N -0.600 5.600 5 C -0.241 4.241 6 H 0.072 0.928 7 C -0.007 4.007 8 N -0.903 5.903 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.293 1.293 13 C 0.160 3.840 14 C -0.136 4.136 15 H 0.077 0.923 16 C -0.153 4.153 17 C 0.049 3.951 18 O -0.392 6.392 19 C 0.063 3.937 20 H 0.031 0.969 21 H 0.051 0.949 22 H 0.030 0.970 23 H 0.014 0.986 24 H 0.097 0.903 25 H 0.099 0.901 26 H -0.005 1.005 27 H 0.249 0.751 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 1.487 -8.298 8.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.046 3.954 4 N -0.320 5.320 5 C -0.370 4.370 6 H 0.090 0.910 7 C -0.203 4.203 8 N -0.550 5.550 9 Si 0.732 3.268 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.220 1.220 13 C 0.032 3.968 14 C -0.158 4.158 15 H 0.095 0.905 16 C -0.191 4.191 17 C -0.028 4.028 18 O -0.311 6.311 19 C -0.013 4.013 20 H 0.050 0.950 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.033 0.967 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.013 0.987 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.810 1.670 -8.082 8.449 hybrid contribution 0.314 -0.071 0.720 0.789 sum 2.124 1.599 -7.362 7.827 Atomic orbital electron populations 1.21634 0.98749 0.99122 1.00015 1.22154 0.92570 1.00819 1.00941 1.20938 0.81546 0.94112 0.98789 1.44149 1.02124 1.84760 1.00995 1.19344 0.92972 1.40600 0.84096 0.91001 1.24814 0.97237 1.00746 0.97553 1.70073 1.14796 1.47670 1.22494 0.86212 0.78916 0.77899 0.83728 1.20524 1.21770 1.21990 1.20660 0.96430 0.91651 0.88022 1.23486 0.98493 1.01456 0.92320 0.90502 1.22967 0.98202 0.99349 0.98627 1.23052 0.97713 0.95012 0.87051 1.88816 1.85571 1.39218 1.17534 1.23654 0.93942 0.91387 0.92326 0.94965 0.93034 0.95111 0.96742 0.88503 0.88365 0.98650 0.94002 0.94088 0.93789 0.91311 0.91043 0.93211 0.90852 0.92621 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.91 37.16 0.37 -2.28 16 2 C -0.13 -2.83 5.77 -26.73 -0.15 -2.98 16 3 C 0.17 4.07 4.86 -4.04 -0.02 4.05 16 4 N -0.60 -14.38 2.53 -173.23 -0.44 -14.81 16 5 C -0.24 -6.26 9.11 -15.06 -0.14 -6.40 16 6 H 0.07 1.84 7.19 -52.48 -0.38 1.46 16 7 C -0.01 -0.20 5.13 -17.43 -0.09 -0.29 16 8 N -0.90 -24.58 8.09 55.49 0.45 -24.13 16 9 Si 0.90 21.42 29.57 -169.99 -5.03 16.39 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.16 3.21 5.13 -4.04 -0.02 3.18 16 14 C -0.14 -2.43 3.35 -88.49 -0.30 -2.73 16 15 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 16 C -0.15 -2.19 6.59 -25.21 -0.17 -2.36 16 17 C 0.05 0.70 7.70 37.73 0.29 0.99 16 18 O -0.39 -7.08 11.52 -35.23 -0.41 -7.49 16 19 C 0.06 1.17 5.98 38.33 0.23 1.40 16 20 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.01 0.31 8.09 -51.93 -0.42 -0.11 16 24 H 0.10 2.51 6.25 -51.93 -0.32 2.18 16 25 H 0.10 2.62 5.76 -51.93 -0.30 2.32 16 26 H 0.00 -0.11 8.12 -51.93 -0.42 -0.53 16 27 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.04 0.79 8.00 -51.93 -0.42 0.37 16 29 H 0.04 0.88 7.89 -51.93 -0.41 0.47 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.95 7.86 -51.93 -0.41 0.54 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.04 7.81 -51.93 -0.41 0.63 16 35 H 0.10 1.97 8.12 -51.93 -0.42 1.55 16 LS Contribution 276.95 15.07 4.17 4.17 Total: -1.00 -27.16 276.95 -7.24 -34.40 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.00 Total: -1.13 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 0.00 Total: -7.41 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.01 Total: -38.94 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.41 Total: -7.49 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.16 -7.24 -34.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.090 kcal (2) G-P(sol) polarization free energy of solvation -27.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds