Wall clock time and date at job start Mon Mar 30 2020 03:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47161 * 2 1 4 4 N 1.46500 * 109.47302 * 183.25291 * 3 2 1 5 5 C 1.36934 * 119.99959 * 263.34837 * 4 3 2 6 6 H 1.08005 * 119.99729 * 193.26924 * 5 4 3 7 7 C 1.38804 * 120.00159 * 13.26594 * 5 4 3 8 8 N 1.31617 * 120.00327 * 13.39677 * 7 5 4 9 9 Si 1.86805 * 120.00247 * 193.39438 * 7 5 4 10 10 H 1.48504 * 109.46569 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.47243 * 119.99937 * 9 7 5 12 12 H 1.48502 * 109.47099 * 240.00537 * 9 7 5 13 13 C 1.46496 * 119.99740 * 83.34345 * 4 3 2 14 14 C 1.53008 * 109.47221 * 92.81229 * 13 4 3 15 15 H 1.09001 * 110.82757 * 309.45182 * 14 13 4 16 16 C 1.54807 * 110.91035 * 185.80590 * 14 13 4 17 17 C 1.54098 * 104.30545 * 220.98943 * 16 14 13 18 18 O 1.43749 * 107.29435 * 357.90195 * 17 16 14 19 19 C 1.44383 * 106.97255 * 26.51318 * 18 17 16 20 20 H 1.08999 * 109.46827 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47126 * 300.00005 * 1 2 3 22 22 H 1.08992 * 109.46992 * 59.99899 * 1 2 3 23 23 H 1.09002 * 109.47126 * 239.99995 * 2 1 3 24 24 H 1.09002 * 109.47299 * 119.99655 * 2 1 3 25 25 H 1.09002 * 109.47132 * 63.25412 * 3 2 1 26 26 H 1.09002 * 109.47221 * 303.25477 * 3 2 1 27 27 H 0.96996 * 120.00830 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47782 * 332.81382 * 13 4 3 29 29 H 1.09000 * 109.47475 * 212.80761 * 13 4 3 30 30 H 1.08998 * 110.48916 * 102.24433 * 16 14 13 31 31 H 1.09004 * 110.48597 * 339.72505 * 16 14 13 32 32 H 1.08996 * 109.88182 * 117.32565 * 17 16 14 33 33 H 1.09001 * 109.88029 * 238.48069 * 17 16 14 34 34 H 1.09005 * 110.61492 * 78.44364 * 19 18 17 35 35 H 1.08993 * 110.61574 * 201.43492 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5029 1.4433 -0.0784 5 6 4.2497 1.5587 1.0636 6 1 5.3060 1.7742 0.9986 7 6 3.6491 1.3989 2.3047 8 7 2.4414 0.8828 2.3899 9 14 4.5549 1.9163 3.8544 10 1 5.8863 2.4640 3.4898 11 1 3.7688 2.9580 4.5628 12 1 4.7298 0.7387 4.7421 13 6 4.1668 1.3205 -1.3785 14 6 4.4528 2.7152 -1.9389 15 1 3.5563 3.3346 -1.9131 16 6 5.0223 2.6272 -3.3758 17 6 6.1383 3.6893 -3.4087 18 8 6.1472 4.3397 -2.1269 19 6 5.6179 3.3955 -1.1714 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.7251 1.9392 0.9177 26 1 1.6298 1.9729 -0.8594 27 1 2.0214 0.7714 3.2571 28 1 3.5194 0.7779 -2.0674 29 1 5.1046 0.7782 -1.2579 30 1 4.2495 2.8629 -4.1075 31 1 5.4339 1.6354 -3.5629 32 1 7.1008 3.2101 -3.5878 33 1 5.9333 4.4182 -4.1928 34 1 6.3755 2.6611 -0.8976 35 1 5.2456 3.9123 -0.2870 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:29 Heat of formation + Delta-G solvation = -47.379255 kcal Electronic energy + Delta-G solvation = -15078.498906 eV Core-core repulsion = 12690.412800 eV Total energy + Delta-G solvation = -2388.086106 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.31730 -37.94455 -34.41448 -33.64517 -32.07860 -29.96154 -27.42367 -26.82494 -23.88919 -22.98746 -21.89953 -20.95151 -18.74426 -17.51338 -16.81634 -16.46128 -15.95246 -15.58858 -15.32222 -14.77117 -14.49747 -14.09754 -13.70223 -13.30970 -13.09174 -12.82945 -12.63334 -12.41639 -12.26996 -12.08897 -12.02656 -11.73499 -11.60463 -11.49996 -11.34642 -11.08142 -10.56268 -10.28167 -8.66655 -7.67733 -5.11338 1.47693 1.51780 1.58749 2.56097 3.09691 3.40463 3.60323 3.93156 3.99912 4.14833 4.30975 4.46619 4.56330 4.66420 4.75438 4.83114 4.88854 4.89538 4.94117 5.01475 5.02712 5.10521 5.21959 5.26909 5.43538 5.53623 5.58317 5.66765 5.95831 6.00595 6.27006 6.47390 7.30382 8.00035 8.40182 9.29354 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024225 B = 0.011381 C = 0.008101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.562072 B = 2459.752153 C = 3455.701382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.116 4.116 3 C 0.175 3.825 4 N -0.615 5.615 5 C -0.242 4.242 6 H 0.072 0.928 7 C -0.056 4.056 8 N -0.919 5.919 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.297 1.297 12 H -0.298 1.298 13 C 0.161 3.839 14 C -0.131 4.131 15 H 0.062 0.938 16 C -0.143 4.143 17 C 0.042 3.958 18 O -0.410 6.410 19 C 0.067 3.933 20 H 0.049 0.951 21 H 0.039 0.961 22 H 0.050 0.950 23 H 0.020 0.980 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.009 0.991 27 H 0.242 0.758 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 1.488 -10.078 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.156 4.156 3 C 0.050 3.950 4 N -0.336 5.336 5 C -0.372 4.372 6 H 0.090 0.910 7 C -0.250 4.250 8 N -0.567 5.567 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.224 1.224 12 H -0.225 1.225 13 C 0.035 3.965 14 C -0.152 4.152 15 H 0.080 0.920 16 C -0.181 4.181 17 C -0.034 4.034 18 O -0.330 6.330 19 C -0.009 4.009 20 H 0.068 0.932 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.190 1.676 -9.896 10.273 hybrid contribution 0.232 -0.053 1.195 1.219 sum 2.423 1.623 -8.701 9.177 Atomic orbital electron populations 1.21528 0.96236 1.00439 1.00422 1.21952 0.94807 0.99486 0.99361 1.20786 0.81816 0.94714 0.97680 1.44341 1.02299 1.85026 1.01946 1.19540 0.93143 1.39538 0.84993 0.91017 1.25411 0.98187 1.01676 0.99733 1.70253 1.15658 1.48610 1.22223 0.85375 0.78164 0.76975 0.80965 1.19829 1.22419 1.22512 1.20779 0.96218 0.93024 0.86510 1.23281 0.97758 0.99420 0.94755 0.91973 1.22933 0.98593 1.00335 0.96225 1.23330 0.98619 0.95667 0.85812 1.88793 1.85583 1.39698 1.18943 1.23461 0.94196 0.91183 0.92083 0.93209 0.94218 0.93048 0.96145 0.92034 0.91511 0.97295 0.94786 0.92878 0.93864 0.89349 0.89542 0.91537 0.88573 0.92847 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 9.91 71.98 0.71 -4.04 16 2 C -0.12 -5.19 5.77 30.60 0.18 -5.02 16 3 C 0.18 8.31 4.86 86.38 0.42 8.73 16 4 N -0.61 -29.37 2.53 -701.99 -1.78 -31.15 16 5 C -0.24 -12.67 9.11 84.03 0.77 -11.90 16 6 H 0.07 3.68 7.19 -2.91 -0.02 3.66 16 7 C -0.06 -3.03 5.13 84.86 0.44 -2.59 16 8 N -0.92 -51.08 8.09 21.65 0.18 -50.91 16 9 Si 0.95 44.73 29.57 68.60 2.03 46.76 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 13 C 0.16 6.22 5.13 86.38 0.44 6.67 16 14 C -0.13 -4.47 3.35 -9.41 -0.03 -4.50 16 15 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 16 C -0.14 -3.60 6.59 31.58 0.21 -3.39 16 17 C 0.04 1.07 7.70 72.35 0.56 1.62 16 18 O -0.41 -14.15 11.52 -148.98 -1.72 -15.87 16 19 C 0.07 2.45 5.98 72.74 0.44 2.89 16 20 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.02 0.85 8.09 -2.39 -0.02 0.83 16 24 H 0.06 3.22 6.25 -2.39 -0.01 3.20 16 25 H 0.07 3.62 5.76 -2.39 -0.01 3.61 16 26 H 0.01 0.39 8.12 -2.39 -0.02 0.37 16 27 H 0.24 13.32 8.31 -92.71 -0.77 12.55 16 28 H 0.05 1.91 8.00 -2.39 -0.02 1.90 16 29 H 0.04 1.67 7.89 -2.39 -0.02 1.65 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.09 1.95 7.86 -2.39 -0.02 1.93 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.95 7.81 -2.38 -0.02 1.94 16 35 H 0.07 2.98 8.12 -2.39 -0.02 2.96 16 Total: -1.00 -57.92 276.95 3.86 -54.05 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.03 Total: 8.65 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 4.12 Total: -11.54 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -1.60 Total: -82.05 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -1.72 Total: -15.87 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -57.92 3.86 -54.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.676 kcal (2) G-P(sol) polarization free energy of solvation -57.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds