Wall clock time and date at job start Mon Mar 30 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47024 * 2 1 4 4 N 1.46498 * 109.46933 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00075 * 269.99939 * 4 3 2 6 6 H 1.07997 * 120.00506 * 320.95569 * 5 4 3 7 7 C 1.38821 * 119.99747 * 140.95991 * 5 4 3 8 8 N 1.31613 * 120.00037 * 338.84882 * 7 5 4 9 9 Si 1.86803 * 119.99709 * 158.85192 * 7 5 4 10 10 H 1.48496 * 109.47058 * 59.99893 * 9 7 5 11 11 H 1.48504 * 109.46768 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46909 * 299.99738 * 9 7 5 13 13 C 1.46501 * 119.99774 * 90.00168 * 4 3 2 14 14 C 1.52996 * 109.47143 * 95.32601 * 13 4 3 15 15 H 1.09007 * 110.46030 * 52.39253 * 14 13 4 16 16 C 1.54508 * 110.51316 * 174.99933 * 14 13 4 17 17 C 1.54476 * 104.06573 * 118.64454 * 16 14 13 18 18 O 1.44429 * 104.80202 * 23.98034 * 17 16 14 19 19 C 1.44430 * 105.27474 * 319.48707 * 18 17 16 20 20 H 1.08997 * 109.46807 * 299.99916 * 1 2 3 21 21 H 1.08997 * 109.46958 * 59.99773 * 1 2 3 22 22 H 1.08991 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46807 * 240.00084 * 2 1 3 24 24 H 1.09002 * 109.46732 * 119.99839 * 2 1 3 25 25 H 1.08997 * 109.47438 * 299.99932 * 3 2 1 26 26 H 1.09008 * 109.47088 * 59.99946 * 3 2 1 27 27 H 0.96998 * 120.00294 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47212 * 215.32583 * 13 4 3 29 29 H 1.08998 * 109.47466 * 335.32420 * 13 4 3 30 30 H 1.09001 * 110.51451 * 237.29504 * 16 14 13 31 31 H 1.09001 * 110.51169 * 0.02562 * 16 14 13 32 32 H 1.09003 * 110.37376 * 142.81044 * 17 16 14 33 33 H 1.09002 * 110.37292 * 265.04052 * 17 16 14 34 34 H 1.08997 * 110.37309 * 281.68123 * 19 18 17 35 35 H 1.09000 * 110.36908 * 159.33688 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4427 1.1868 6 1 3.8299 2.0319 2.0174 7 6 5.3449 0.6854 1.3215 8 7 5.5659 -0.3279 0.5112 9 14 6.5862 1.1047 2.6531 10 1 5.9359 1.0070 3.9845 11 1 7.7235 0.1521 2.5870 12 1 7.0856 2.4878 2.4463 13 6 4.2380 1.4423 -1.2678 14 6 4.6091 2.8785 -1.6426 15 1 5.1218 3.3681 -0.8145 16 6 5.4906 2.8964 -2.9114 17 6 4.6591 3.7011 -3.9349 18 8 3.7839 4.5243 -3.1335 19 6 3.3493 3.6745 -2.0495 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6768 1.9564 -0.8899 26 1 1.6767 1.9564 0.8900 27 1 6.3735 -0.8568 0.6051 28 1 5.1458 0.8481 -1.1629 29 1 3.6113 1.0132 -2.0496 30 1 6.4381 3.3968 -2.7113 31 1 5.6617 1.8821 -3.2720 32 1 5.3109 4.3244 -4.5471 33 1 4.0779 3.0277 -4.5648 34 1 2.5657 2.9972 -2.3890 35 1 2.9950 4.2775 -1.2134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:32 Heat of formation + Delta-G solvation = -60.299923 kcal Electronic energy + Delta-G solvation = -15094.574965 eV Core-core repulsion = 12705.928576 eV Total energy + Delta-G solvation = -2388.646389 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.34553 -37.80152 -34.66243 -33.75198 -32.04510 -30.03630 -27.33553 -26.92368 -24.00705 -23.22096 -21.75218 -21.10662 -18.66181 -17.36188 -16.81017 -16.38632 -16.14404 -15.78480 -15.58071 -14.83236 -14.51196 -14.22901 -13.66966 -13.42570 -13.07314 -12.75175 -12.70488 -12.58960 -12.46380 -12.24387 -11.96146 -11.87466 -11.61754 -11.53684 -11.31052 -11.22736 -10.67431 -10.50344 -8.51287 -7.78860 -5.44049 1.44862 1.47312 1.53341 2.51060 3.13236 3.25953 3.60943 3.98959 4.03627 4.17250 4.27165 4.33716 4.46086 4.49408 4.70173 4.75506 4.82925 4.83612 4.89288 4.93393 5.01147 5.13486 5.14888 5.25839 5.28493 5.47703 5.48772 5.63511 5.67890 5.83922 5.93083 6.50231 7.20566 7.89358 8.42626 9.14519 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.012955 C = 0.008752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.553498 B = 2160.807063 C = 3198.666893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.144 3.856 4 N -0.599 5.599 5 C -0.266 4.266 6 H 0.051 0.949 7 C -0.030 4.030 8 N -0.914 5.914 9 Si 0.950 3.050 10 H -0.277 1.277 11 H -0.293 1.293 12 H -0.281 1.281 13 C 0.163 3.837 14 C -0.132 4.132 15 H 0.051 0.949 16 C -0.147 4.147 17 C 0.048 3.952 18 O -0.402 6.402 19 C 0.067 3.933 20 H 0.056 0.944 21 H 0.063 0.937 22 H 0.054 0.946 23 H 0.035 0.965 24 H 0.027 0.973 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.251 0.749 28 H 0.060 0.940 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.159 4.420 -6.457 8.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.019 3.981 4 N -0.320 5.320 5 C -0.397 4.397 6 H 0.069 0.931 7 C -0.228 4.228 8 N -0.557 5.557 9 Si 0.778 3.222 10 H -0.203 1.203 11 H -0.219 1.219 12 H -0.207 1.207 13 C 0.037 3.963 14 C -0.153 4.153 15 H 0.070 0.930 16 C -0.186 4.186 17 C -0.028 4.028 18 O -0.321 6.321 19 C -0.009 4.009 20 H 0.075 0.925 21 H 0.082 0.918 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.105 4.523 -6.491 8.913 hybrid contribution 1.005 -0.435 0.988 1.475 sum -3.100 4.088 -5.503 7.524 Atomic orbital electron populations 1.21668 0.94240 1.01609 1.02014 1.21944 0.96058 0.99604 0.99572 1.21126 0.83899 0.94119 0.99002 1.44027 1.00601 1.85451 1.01882 1.19135 1.07111 1.20864 0.92565 0.93135 1.25790 1.02484 0.94672 0.99838 1.70096 1.26685 1.17377 1.41553 0.85630 0.79129 0.77377 0.80044 1.20268 1.21887 1.20687 1.20787 0.97343 0.92414 0.85745 1.22995 0.95936 0.99352 0.97039 0.93009 1.22924 0.99183 1.01363 0.95084 1.23522 0.92000 0.93889 0.93429 1.89019 1.65797 1.37053 1.40250 1.23361 0.96055 0.92559 0.88959 0.92534 0.91815 0.92681 0.94645 0.95372 0.92720 0.94204 0.94029 0.92213 0.95015 0.91073 0.90411 0.87377 0.91343 0.92169 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.91 71.98 0.71 -3.29 16 2 C -0.13 -5.18 6.26 30.60 0.19 -4.99 16 3 C 0.14 5.89 5.43 86.38 0.47 6.36 16 4 N -0.60 -29.02 2.34 -702.00 -1.64 -30.66 16 5 C -0.27 -14.41 9.41 84.04 0.79 -13.62 16 6 H 0.05 2.76 7.91 -2.91 -0.02 2.74 16 7 C -0.03 -1.64 5.00 84.87 0.42 -1.22 16 8 N -0.91 -52.59 11.49 21.65 0.25 -52.34 16 9 Si 0.95 44.45 29.60 68.60 2.03 46.48 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.16 7.41 4.51 86.38 0.39 7.80 16 14 C -0.13 -5.18 3.32 -9.78 -0.03 -5.21 16 15 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 16 C -0.15 -4.71 6.74 31.61 0.21 -4.50 16 17 C 0.05 1.32 7.63 72.48 0.55 1.87 16 18 O -0.40 -13.55 11.65 -148.98 -1.74 -15.29 16 19 C 0.07 2.34 6.41 72.49 0.46 2.81 16 20 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.05 1.98 6.37 -2.39 -0.02 1.96 16 26 H 0.04 1.62 8.04 -2.38 -0.02 1.60 16 27 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.06 3.15 5.59 -2.39 -0.01 3.14 16 29 H 0.03 1.36 7.85 -2.39 -0.02 1.34 16 30 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 2.44 7.73 -2.39 -0.02 2.42 16 32 H 0.11 2.40 8.14 -2.39 -0.02 2.39 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 2.02 6.59 -2.39 -0.02 2.00 16 35 H 0.08 2.83 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -60.02 280.85 4.11 -55.91 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.03 Total: 9.90 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 4.18 Total: -14.00 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -1.39 Total: -83.00 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -1.74 Total: -15.29 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -60.02 4.11 -55.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.393 kcal (2) G-P(sol) polarization free energy of solvation -60.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds