Wall clock time and date at job start Mon Mar 30 2020 04:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47209 * 2 1 4 4 C 1.53001 * 109.47331 * 240.00618 * 2 1 3 5 5 C 1.52998 * 109.47594 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46975 * 59.99580 * 5 4 2 7 7 C 1.52999 * 109.47343 * 300.00046 * 6 5 4 8 8 C 1.52993 * 109.47037 * 179.97438 * 7 6 5 9 9 O 1.42907 * 109.46866 * 65.00647 * 8 7 6 10 10 N 1.46499 * 109.47431 * 300.00392 * 7 6 5 11 11 C 1.36932 * 119.99549 * 299.99828 * 10 7 6 12 12 H 1.08003 * 120.00354 * 0.02562 * 11 10 7 13 13 C 1.38817 * 120.00011 * 179.97438 * 11 10 7 14 14 N 1.31619 * 120.00154 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99635 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99668 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99848 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99841 * 15 13 11 19 19 C 1.52993 * 109.47700 * 120.00410 * 2 1 3 20 20 H 1.08996 * 109.46802 * 299.98870 * 1 2 3 21 21 H 1.08994 * 109.47548 * 59.99624 * 1 2 3 22 22 H 1.09002 * 109.46705 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47207 * 299.99853 * 4 2 1 24 24 H 1.09004 * 109.47151 * 59.99402 * 4 2 1 25 25 H 1.08997 * 109.47675 * 180.02562 * 5 4 2 26 26 H 1.09002 * 109.46795 * 299.99757 * 5 4 2 27 27 H 1.09000 * 109.46647 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.46709 * 60.00560 * 6 5 4 29 29 H 1.09005 * 109.47206 * 185.00175 * 8 7 6 30 30 H 1.08991 * 109.47678 * 305.00720 * 8 7 6 31 31 H 0.96695 * 114.00013 * 179.97438 * 9 8 7 32 32 H 0.96993 * 120.00302 * 119.99793 * 10 7 6 33 33 H 0.96998 * 119.99442 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47247 * 60.00080 * 19 2 1 35 35 H 1.09008 * 109.47146 * 300.00099 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4415 -0.0005 7 6 3.5706 -0.7204 1.2488 8 6 4.0806 -1.4417 2.4979 9 8 5.5049 -1.3407 2.5581 10 7 4.0584 0.6611 1.2486 11 6 5.4046 0.9117 1.2483 12 1 6.1067 0.0911 1.2477 13 6 5.8668 2.2207 1.2475 14 7 7.1608 2.4616 1.2467 15 14 4.6524 3.6400 1.2477 16 1 4.3298 4.0157 -0.1523 17 1 5.2522 4.8047 1.9470 18 1 3.4097 3.2281 1.9486 19 6 2.0401 -0.7213 1.2491 20 1 -0.3633 0.5136 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6768 -1.7488 -1.2494 24 1 1.6766 -0.2072 -2.1393 25 1 3.9334 -1.2339 -2.1399 26 1 3.9330 0.3072 -1.2499 27 1 5.1706 -1.4407 -0.0006 28 1 3.7176 -2.4693 -0.0004 29 1 3.6460 -0.9822 3.3858 30 1 3.7924 -2.4919 2.4542 31 1 5.8979 -1.7764 3.3266 32 1 3.4278 1.3980 1.2487 33 1 7.4837 3.3763 1.2458 34 1 1.6769 -1.7490 1.2491 35 1 1.6768 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053126573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:20 Heat of formation + Delta-G solvation = -52.127413 kcal Electronic energy + Delta-G solvation = -15610.136574 eV Core-core repulsion = 13221.844572 eV Total energy + Delta-G solvation = -2388.292002 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.09881 -35.79995 -33.65209 -31.81967 -31.16306 -29.12166 -26.10138 -24.96211 -23.06194 -21.48689 -19.94035 -18.25252 -17.66954 -16.20846 -14.94928 -14.76837 -14.21245 -13.79253 -13.65264 -13.58652 -12.66075 -12.58382 -12.18772 -11.99245 -11.89098 -11.38513 -11.03603 -10.99556 -10.78104 -10.61720 -10.42729 -10.16489 -9.87669 -9.67783 -9.48164 -9.31140 -8.85225 -8.67396 -7.07059 -5.52282 -2.85800 3.46765 3.48988 3.55289 4.74258 4.86423 5.07962 5.16865 5.35469 5.40561 5.63390 5.69683 5.83031 5.88171 5.92589 5.94954 6.01001 6.06361 6.08146 6.13246 6.15558 6.27488 6.40759 6.45833 6.57919 6.70673 6.79377 6.94782 7.13644 7.23958 8.34252 8.49329 8.71340 9.48657 10.16795 10.34774 11.66710 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025943 B = 0.013874 C = 0.011185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.046615 B = 2017.698504 C = 2502.677607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.073 0.927 4 C -0.108 4.108 5 C -0.113 4.113 6 C -0.114 4.114 7 C 0.208 3.792 8 C 0.073 3.927 9 O -0.530 6.530 10 N -0.734 5.734 11 C -0.204 4.204 12 H 0.116 0.884 13 C -0.008 4.008 14 N -0.942 5.942 15 Si 0.869 3.131 16 H -0.288 1.288 17 H -0.295 1.295 18 H -0.281 1.281 19 C -0.111 4.111 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.031 0.969 30 H 0.023 0.977 31 H 0.350 0.650 32 H 0.357 0.643 33 H 0.253 0.747 34 H 0.062 0.938 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.852 -8.380 -0.972 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.153 4.153 7 C 0.116 3.884 8 C -0.007 4.007 9 O -0.333 6.333 10 N -0.377 5.377 11 C -0.334 4.334 12 H 0.133 0.867 13 C -0.201 4.201 14 N -0.593 5.593 15 Si 0.701 3.299 16 H -0.216 1.216 17 H -0.222 1.222 18 H -0.208 1.208 19 C -0.149 4.149 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.194 0.806 32 H 0.191 0.809 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.716 -8.046 -1.533 14.295 hybrid contribution -0.776 0.896 0.661 1.358 sum -12.492 -7.150 -0.871 14.420 Atomic orbital electron populations 1.21846 0.96027 1.01210 1.01210 1.21075 0.94253 1.00463 0.95105 0.90878 1.21555 0.96859 0.99406 0.96726 1.21420 0.93972 1.02613 0.97065 1.21821 1.02090 0.96411 0.94991 1.19594 0.90354 0.86290 0.92120 1.22731 0.82793 0.96320 0.98897 1.87014 1.18891 1.79205 1.48153 1.42872 1.04995 1.00334 1.89495 1.19458 0.81839 0.93575 1.38493 0.86692 1.24645 0.95109 0.96372 1.03945 1.69682 1.11135 1.18620 1.59818 0.86766 0.81344 0.84310 0.77501 1.21555 1.22205 1.20799 1.21729 0.95362 1.00177 0.97617 0.93047 0.93057 0.93050 0.92887 0.92941 0.93499 0.90432 0.90790 0.94173 0.95084 0.95940 0.80586 0.80933 0.93641 0.91902 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.19 37.16 0.34 -1.44 16 2 C -0.09 -1.37 2.55 -90.62 -0.23 -1.60 16 3 H 0.07 1.28 6.86 -51.93 -0.36 0.92 16 4 C -0.11 -1.59 5.20 -26.73 -0.14 -1.73 16 5 C -0.11 -1.99 5.77 -26.73 -0.15 -2.15 16 6 C -0.11 -2.12 4.46 -26.73 -0.12 -2.24 16 7 C 0.21 3.97 0.67 -131.80 -0.09 3.88 16 8 C 0.07 1.33 6.09 37.15 0.23 1.55 16 9 O -0.53 -10.88 9.93 -35.23 -0.35 -11.23 16 10 N -0.73 -17.21 3.88 -47.21 -0.18 -17.39 16 11 C -0.20 -5.72 8.60 -15.06 -0.13 -5.85 16 12 H 0.12 3.52 5.50 -52.48 -0.29 3.23 16 13 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 14 N -0.94 -30.40 13.97 55.49 0.78 -29.63 16 15 Si 0.87 22.67 27.73 -169.99 -4.71 17.96 16 16 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 17 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 18 H -0.28 -6.94 6.52 56.52 0.37 -6.57 16 19 C -0.11 -1.74 4.06 -26.71 -0.11 -1.84 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.62 7.60 -51.93 -0.39 1.22 16 27 H 0.07 1.61 6.95 -51.93 -0.36 1.25 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.35 5.48 9.12 45.56 0.42 5.90 16 32 H 0.36 8.40 4.38 -40.82 -0.18 8.22 16 33 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 LS Contribution 266.62 15.07 4.02 4.02 Total: -1.00 -32.32 266.62 -5.93 -38.25 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.98 Total: 9.75 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -0.50 Total: -11.73 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.59 Total: -47.02 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.35 Total: -11.23 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.71 Total: 17.96 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.32 -5.93 -38.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053126573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.877 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds