Wall clock time and date at job start Mon Mar 30 2020 04:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47209 * 2 1 4 4 C 1.53001 * 109.47331 * 240.00618 * 2 1 3 5 5 C 1.52998 * 109.47594 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46975 * 59.99580 * 5 4 2 7 7 C 1.52999 * 109.47343 * 300.00046 * 6 5 4 8 8 C 1.52993 * 109.47037 * 179.97438 * 7 6 5 9 9 O 1.42907 * 109.46866 * 65.00647 * 8 7 6 10 10 N 1.46499 * 109.47431 * 300.00392 * 7 6 5 11 11 C 1.36932 * 119.99549 * 299.99828 * 10 7 6 12 12 H 1.08003 * 120.00354 * 0.02562 * 11 10 7 13 13 C 1.38817 * 120.00011 * 179.97438 * 11 10 7 14 14 N 1.31619 * 120.00154 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99635 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99668 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99848 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99841 * 15 13 11 19 19 C 1.52993 * 109.47700 * 120.00410 * 2 1 3 20 20 H 1.08996 * 109.46802 * 299.98870 * 1 2 3 21 21 H 1.08994 * 109.47548 * 59.99624 * 1 2 3 22 22 H 1.09002 * 109.46705 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47207 * 299.99853 * 4 2 1 24 24 H 1.09004 * 109.47151 * 59.99402 * 4 2 1 25 25 H 1.08997 * 109.47675 * 180.02562 * 5 4 2 26 26 H 1.09002 * 109.46795 * 299.99757 * 5 4 2 27 27 H 1.09000 * 109.46647 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.46709 * 60.00560 * 6 5 4 29 29 H 1.09005 * 109.47206 * 185.00175 * 8 7 6 30 30 H 1.08991 * 109.47678 * 305.00720 * 8 7 6 31 31 H 0.96695 * 114.00013 * 179.97438 * 9 8 7 32 32 H 0.96993 * 120.00302 * 119.99793 * 10 7 6 33 33 H 0.96998 * 119.99442 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47247 * 60.00080 * 19 2 1 35 35 H 1.09008 * 109.47146 * 300.00099 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4415 -0.0005 7 6 3.5706 -0.7204 1.2488 8 6 4.0806 -1.4417 2.4979 9 8 5.5049 -1.3407 2.5581 10 7 4.0584 0.6611 1.2486 11 6 5.4046 0.9117 1.2483 12 1 6.1067 0.0911 1.2477 13 6 5.8668 2.2207 1.2475 14 7 7.1608 2.4616 1.2467 15 14 4.6524 3.6400 1.2477 16 1 4.3298 4.0157 -0.1523 17 1 5.2522 4.8047 1.9470 18 1 3.4097 3.2281 1.9486 19 6 2.0401 -0.7213 1.2491 20 1 -0.3633 0.5136 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6768 -1.7488 -1.2494 24 1 1.6766 -0.2072 -2.1393 25 1 3.9334 -1.2339 -2.1399 26 1 3.9330 0.3072 -1.2499 27 1 5.1706 -1.4407 -0.0006 28 1 3.7176 -2.4693 -0.0004 29 1 3.6460 -0.9822 3.3858 30 1 3.7924 -2.4919 2.4542 31 1 5.8979 -1.7764 3.3266 32 1 3.4278 1.3980 1.2487 33 1 7.4837 3.3763 1.2458 34 1 1.6769 -1.7490 1.2491 35 1 1.6768 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053126573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:20 Heat of formation + Delta-G solvation = -75.752711 kcal Electronic energy + Delta-G solvation = -15611.161044 eV Core-core repulsion = 13221.844572 eV Total energy + Delta-G solvation = -2389.316472 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.53341 -37.25755 -35.45439 -33.55033 -32.67664 -30.94235 -27.24561 -26.34062 -25.15250 -22.83858 -21.20218 -19.86239 -19.64968 -17.82939 -16.51381 -16.22100 -16.11196 -15.34705 -15.03352 -14.84083 -14.61287 -13.93409 -13.79846 -13.47128 -13.10017 -12.92775 -12.71593 -12.48331 -12.39045 -12.14893 -11.99830 -11.68879 -11.45919 -11.21679 -11.12546 -10.86246 -10.65226 -10.46557 -9.12297 -7.81088 -5.10860 1.35773 1.38938 1.45384 2.59189 3.38520 3.55529 3.75941 3.94991 3.98052 4.14801 4.35959 4.46536 4.58784 4.65411 4.70400 4.72113 4.82460 4.85354 4.89211 5.03855 5.09949 5.12128 5.16650 5.31542 5.46819 5.50361 5.56458 5.70046 5.74837 6.17717 6.49013 7.13308 7.34563 8.04784 8.21779 9.41585 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025943 B = 0.013874 C = 0.011185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.046615 B = 2017.698504 C = 2502.677607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 H 0.042 0.958 4 C -0.101 4.101 5 C -0.113 4.113 6 C -0.109 4.109 7 C 0.192 3.808 8 C 0.070 3.930 9 O -0.567 6.567 10 N -0.737 5.737 11 C -0.165 4.165 12 H 0.085 0.915 13 C -0.086 4.086 14 N -0.997 5.997 15 Si 0.934 3.066 16 H -0.288 1.288 17 H -0.306 1.306 18 H -0.257 1.257 19 C -0.104 4.104 20 H 0.054 0.946 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.369 0.631 32 H 0.358 0.642 33 H 0.247 0.753 34 H 0.095 0.905 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.247 -9.893 -0.961 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.061 0.939 4 C -0.138 4.138 5 C -0.151 4.151 6 C -0.148 4.148 7 C 0.102 3.898 8 C -0.010 4.010 9 O -0.373 6.373 10 N -0.379 5.379 11 C -0.297 4.297 12 H 0.103 0.897 13 C -0.274 4.274 14 N -0.652 5.652 15 Si 0.765 3.235 16 H -0.215 1.215 17 H -0.234 1.234 18 H -0.182 1.182 19 C -0.142 4.142 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.216 0.784 32 H 0.191 0.809 33 H 0.055 0.945 34 H 0.114 0.886 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.178 -9.614 -1.509 18.030 hybrid contribution 0.300 1.186 0.646 1.384 sum -14.878 -8.428 -0.863 17.120 Atomic orbital electron populations 1.21775 0.93283 1.02709 1.01805 1.21087 0.96495 0.98659 0.94969 0.93931 1.21515 0.93991 1.01143 0.97140 1.21385 0.96652 0.99922 0.97121 1.21738 0.99367 0.98360 0.95325 1.20068 0.93184 0.83835 0.92693 1.22787 0.81593 0.98406 0.98205 1.86936 1.20609 1.80074 1.49633 1.42912 1.03067 1.02714 1.89200 1.19361 0.83609 0.92411 1.34316 0.89749 1.25334 0.96695 0.99305 1.06083 1.69876 1.13452 1.18552 1.63347 0.85673 0.79868 0.80545 0.77429 1.21514 1.23365 1.18199 1.21720 0.92055 1.02332 0.98076 0.92699 0.92384 0.91044 0.90202 0.91929 0.92482 0.94701 0.95169 0.90926 0.94882 0.92188 0.78372 0.80883 0.94450 0.88621 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.19 71.98 0.66 -2.09 16 2 C -0.09 -2.50 2.55 -10.80 -0.03 -2.53 16 3 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 4 C -0.10 -2.61 5.20 30.59 0.16 -2.45 16 5 C -0.11 -3.84 5.77 30.59 0.18 -3.66 16 6 C -0.11 -3.89 4.46 30.59 0.14 -3.75 16 7 C 0.19 6.94 0.67 3.62 0.00 6.94 16 8 C 0.07 2.37 6.09 71.98 0.44 2.81 16 9 O -0.57 -23.17 9.93 -148.98 -1.48 -24.65 16 10 N -0.74 -34.20 3.88 -303.28 -1.18 -35.37 16 11 C -0.17 -9.51 8.60 84.04 0.72 -8.79 16 12 H 0.08 5.39 5.50 -2.91 -0.02 5.37 16 13 C -0.09 -5.29 5.50 84.86 0.47 -4.82 16 14 N -1.00 -67.17 13.97 21.65 0.30 -66.87 16 15 Si 0.93 48.02 27.73 68.60 1.90 49.93 16 16 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 17 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16 18 H -0.26 -11.95 6.52 99.48 0.65 -11.30 16 19 C -0.10 -2.84 4.06 30.61 0.12 -2.72 16 20 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 26 H 0.03 1.46 7.60 -2.39 -0.02 1.44 16 27 H 0.03 1.32 6.95 -2.39 -0.02 1.31 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.37 11.44 9.12 -74.06 -0.68 10.76 16 32 H 0.36 16.45 4.38 -92.71 -0.41 16.04 16 33 H 0.25 16.06 8.31 -92.71 -0.77 15.29 16 34 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -72.80 266.62 2.34 -70.46 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.07 Total: 27.58 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 2.86 Total: -21.07 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -0.87 Total: -102.24 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -1.48 Total: -24.65 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 1.90 Total: 49.93 kcal Total: -72.80 2.34 -70.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053126573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.291 kcal (2) G-P(sol) polarization free energy of solvation -72.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds