Wall clock time and date at job start Mon Mar 30 2020 04:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46858 * 2 1 4 4 C 1.52997 * 109.47501 * 119.99883 * 2 1 3 5 5 C 1.53000 * 109.46725 * 60.00102 * 4 2 1 6 6 C 1.53005 * 109.47275 * 59.99936 * 5 4 2 7 7 C 1.52992 * 109.46977 * 300.00121 * 6 5 4 8 8 C 1.53005 * 109.46822 * 179.97438 * 7 6 5 9 9 O 1.42905 * 109.46888 * 65.00289 * 8 7 6 10 10 N 1.46500 * 109.47098 * 299.99720 * 7 6 5 11 11 C 1.36935 * 120.00060 * 184.71800 * 10 7 6 12 12 H 1.08005 * 119.99808 * 0.02562 * 11 10 7 13 13 C 1.38812 * 120.00387 * 179.97438 * 11 10 7 14 14 N 1.31619 * 119.99731 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00397 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46988 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47450 * 120.00190 * 15 13 11 18 18 H 1.48500 * 109.47366 * 240.00477 * 15 13 11 19 19 C 1.52995 * 109.47250 * 240.00335 * 2 1 3 20 20 H 1.09000 * 109.46837 * 193.01380 * 1 2 3 21 21 H 1.09003 * 109.47068 * 313.00776 * 1 2 3 22 22 H 1.08997 * 109.47212 * 73.00711 * 1 2 3 23 23 H 1.09001 * 109.47466 * 179.97438 * 4 2 1 24 24 H 1.09001 * 109.47219 * 300.00787 * 4 2 1 25 25 H 1.09001 * 109.46890 * 179.97438 * 5 4 2 26 26 H 1.09001 * 109.47406 * 299.99724 * 5 4 2 27 27 H 1.09000 * 109.47220 * 179.97438 * 6 5 4 28 28 H 1.08998 * 109.46450 * 59.99962 * 6 5 4 29 29 H 1.09001 * 109.46908 * 184.99461 * 8 7 6 30 30 H 1.08993 * 109.47497 * 304.99789 * 8 7 6 31 31 H 0.96698 * 113.99657 * 180.02562 * 9 8 7 32 32 H 0.96995 * 120.00089 * 4.71249 * 10 7 6 33 33 H 0.96997 * 120.00048 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.47439 * 179.97438 * 19 2 1 35 35 H 1.09001 * 109.47048 * 59.99473 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2492 6 6 2.0401 -2.8849 -0.0002 7 6 1.5301 -2.1636 -1.2493 8 6 2.0406 -2.8845 -2.4986 9 8 1.4711 -4.1938 -2.5591 10 7 0.0651 -2.1637 -1.2492 11 6 -0.6197 -1.6572 -2.3215 12 1 -0.0797 -1.2580 -3.1674 13 6 -2.0078 -1.6577 -2.3217 14 7 -2.6659 -2.1445 -1.2911 15 14 -2.9418 -0.9674 -3.7847 16 1 -1.9769 -0.4857 -4.8055 17 1 -3.7951 -2.0304 -4.3736 18 1 -3.7960 0.1624 -3.3384 19 6 2.0400 -0.7211 -1.2492 20 1 -0.3633 -1.0013 0.2314 21 1 -0.3633 0.7010 0.7515 22 1 -0.3633 0.3003 -0.9828 23 1 3.1301 -0.7216 1.2490 24 1 1.6767 -0.2074 2.1392 25 1 1.8939 -2.6777 2.1389 26 1 0.4401 -2.1638 1.2492 27 1 1.6771 -3.9127 0.0000 28 1 3.1301 -2.8849 -0.0001 29 1 1.7521 -2.3216 -3.3863 30 1 3.1268 -2.9624 -2.4548 31 1 1.7518 -4.7096 -3.3273 32 1 -0.4199 -2.5226 -0.4897 33 1 -3.6358 -2.1452 -1.2914 34 1 3.1300 -0.7208 -1.2495 35 1 1.6766 -0.2073 -2.1392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053126575.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:22 Heat of formation + Delta-G solvation = -58.078024 kcal Electronic energy + Delta-G solvation = -15889.525087 eV Core-core repulsion = 13500.975047 eV Total energy + Delta-G solvation = -2388.550040 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78584 -37.22158 -35.32202 -33.25774 -32.29820 -30.45504 -27.25769 -26.26296 -25.56866 -23.09351 -21.05275 -19.39117 -18.95571 -17.89915 -16.75420 -16.38660 -15.84996 -15.44185 -14.94474 -14.72428 -14.13684 -13.77602 -13.68848 -13.26128 -13.12200 -12.92930 -12.71337 -12.44231 -12.22927 -12.10654 -11.67999 -11.59091 -11.43050 -11.15379 -11.02467 -10.80562 -10.47934 -10.40167 -8.58480 -7.77984 -4.97393 1.46473 1.47837 1.55074 2.64338 3.55362 3.59674 3.88722 4.06299 4.13306 4.21389 4.43845 4.59755 4.62254 4.67416 4.78012 4.84022 4.93346 4.97661 5.07643 5.15077 5.21669 5.27799 5.32719 5.42955 5.58437 5.60739 5.69656 5.74655 5.77517 6.22529 6.43532 7.14580 7.50995 8.28626 8.52222 9.46383 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029805 B = 0.013444 C = 0.011206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.211428 B = 2082.237655 C = 2498.112637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 H 0.064 0.936 4 C -0.102 4.102 5 C -0.119 4.119 6 C -0.103 4.103 7 C 0.189 3.811 8 C 0.074 3.926 9 O -0.576 6.576 10 N -0.702 5.702 11 C -0.188 4.188 12 H 0.065 0.935 13 C -0.075 4.075 14 N -0.967 5.967 15 Si 0.947 3.053 16 H -0.271 1.271 17 H -0.304 1.304 18 H -0.302 1.302 19 C -0.112 4.112 20 H 0.076 0.924 21 H 0.010 0.990 22 H 0.032 0.968 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.024 0.976 30 H 0.059 0.941 31 H 0.379 0.621 32 H 0.373 0.627 33 H 0.243 0.757 34 H 0.076 0.924 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.103 1.071 1.880 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.095 4.095 3 H 0.082 0.918 4 C -0.140 4.140 5 C -0.156 4.156 6 C -0.141 4.141 7 C 0.099 3.901 8 C -0.006 4.006 9 O -0.381 6.381 10 N -0.343 5.343 11 C -0.320 4.320 12 H 0.083 0.917 13 C -0.266 4.266 14 N -0.620 5.620 15 Si 0.780 3.220 16 H -0.196 1.196 17 H -0.232 1.232 18 H -0.230 1.230 19 C -0.151 4.151 20 H 0.095 0.905 21 H 0.029 0.971 22 H 0.051 0.949 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.226 0.774 32 H 0.208 0.792 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.807 1.345 2.261 13.074 hybrid contribution -1.153 0.048 -1.329 1.760 sum 11.653 1.392 0.932 11.773 Atomic orbital electron populations 1.22125 0.95659 1.02277 0.99053 1.20916 0.95453 0.98160 0.94934 0.91781 1.21489 1.00653 0.94839 0.96983 1.21536 1.00238 0.96356 0.97518 1.21562 1.00614 0.98233 0.93703 1.19976 0.84196 0.92933 0.92967 1.22691 0.95500 0.83657 0.98715 1.86594 1.73937 1.27501 1.50063 1.42696 1.00164 1.71882 1.19556 1.19209 0.88637 1.27974 0.96205 0.91737 1.25146 0.97404 1.04478 0.99612 1.69783 1.05860 1.54757 1.31637 0.85421 0.79015 0.77010 0.80556 1.19601 1.23181 1.22976 1.21886 0.99545 0.96143 0.97554 0.90523 0.97064 0.94868 0.90386 0.92204 0.91013 0.93926 0.93472 0.89863 0.95781 0.92332 0.77443 0.79206 0.94835 0.90537 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 7.53 71.98 0.54 -5.15 16 2 C -0.08 -2.54 3.19 -10.80 -0.03 -2.58 16 3 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 4 C -0.10 -2.88 5.45 30.59 0.17 -2.72 16 5 C -0.12 -3.74 5.57 30.60 0.17 -3.57 16 6 C -0.10 -3.37 4.70 30.59 0.14 -3.23 16 7 C 0.19 7.09 0.53 3.60 0.00 7.09 16 8 C 0.07 2.57 5.59 71.98 0.40 2.98 16 9 O -0.58 -21.51 12.96 -148.98 -1.93 -23.44 16 10 N -0.70 -33.58 2.44 -303.35 -0.74 -34.32 16 11 C -0.19 -9.99 6.60 84.03 0.55 -9.44 16 12 H 0.06 3.40 6.75 -2.91 -0.02 3.38 16 13 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 14 N -0.97 -59.19 13.06 21.65 0.28 -58.91 16 15 Si 0.95 47.16 29.55 68.60 2.03 49.19 16 16 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 18 H -0.30 -15.21 7.11 99.48 0.71 -14.51 16 19 C -0.11 -3.76 4.28 30.59 0.13 -3.63 16 20 H 0.08 3.65 3.26 -2.39 -0.01 3.64 16 21 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 22 H 0.03 1.59 6.50 -2.39 -0.02 1.57 16 23 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.64 5.25 -2.39 -0.01 1.63 16 27 H 0.05 1.72 7.82 -2.39 -0.02 1.70 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.02 0.90 7.22 -2.39 -0.02 0.88 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.38 10.21 9.12 -74.06 -0.68 9.54 16 32 H 0.37 19.91 5.44 -92.71 -0.50 19.40 16 33 H 0.24 14.68 8.31 -92.71 -0.77 13.91 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.53 7.55 -2.39 -0.02 1.51 16 Total: -1.00 -64.29 260.61 2.09 -62.20 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -0.09 Total: 29.34 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 2.55 Total: -24.05 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -0.46 Total: -93.23 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -1.93 Total: -23.44 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -64.29 2.09 -62.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053126575.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.118 kcal (2) G-P(sol) polarization free energy of solvation -64.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds