Wall clock time and date at job start Mon Mar 30 2020 04:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.47121 * 2 1 4 4 C 1.53006 * 109.46864 * 240.00706 * 2 1 3 5 5 C 1.53001 * 109.46846 * 299.99665 * 4 2 1 6 6 C 1.52998 * 109.47403 * 300.00363 * 5 4 2 7 7 C 1.52999 * 109.47151 * 60.00012 * 6 5 4 8 8 C 1.53005 * 109.47385 * 180.02562 * 7 6 5 9 9 O 1.42903 * 109.46283 * 299.99845 * 8 7 6 10 10 N 1.46498 * 109.47488 * 60.00222 * 7 6 5 11 11 C 1.36930 * 120.00384 * 175.44620 * 10 7 6 12 12 H 1.08004 * 119.99925 * 0.02562 * 11 10 7 13 13 C 1.38807 * 120.00101 * 179.97438 * 11 10 7 14 14 N 1.31622 * 119.99852 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00090 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47422 * 270.00303 * 15 13 11 17 17 H 1.48507 * 109.47013 * 150.00318 * 15 13 11 18 18 H 1.48502 * 109.46928 * 30.00628 * 15 13 11 19 19 C 1.52998 * 109.47088 * 120.00525 * 2 1 3 20 20 H 1.08998 * 109.46722 * 287.49218 * 1 2 3 21 21 H 1.08999 * 109.47169 * 47.48946 * 1 2 3 22 22 H 1.08996 * 109.47160 * 167.48853 * 1 2 3 23 23 H 1.08995 * 109.46947 * 59.99777 * 4 2 1 24 24 H 1.09002 * 109.46814 * 179.97438 * 4 2 1 25 25 H 1.09002 * 109.47194 * 60.00502 * 5 4 2 26 26 H 1.09002 * 109.46785 * 180.02562 * 5 4 2 27 27 H 1.09002 * 109.47058 * 300.00222 * 6 5 4 28 28 H 1.08992 * 109.47698 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.47153 * 59.99114 * 8 7 6 30 30 H 1.08995 * 109.47058 * 180.02562 * 8 7 6 31 31 H 0.96710 * 113.99439 * 179.97438 * 9 8 7 32 32 H 0.97005 * 119.99567 * 355.44884 * 10 7 6 33 33 H 0.96996 * 120.00142 * 359.97438 * 14 13 11 34 34 H 1.09004 * 109.47063 * 299.99280 * 19 2 1 35 35 H 1.09000 * 109.46585 * 179.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5300 -2.1636 -1.2494 6 6 2.0400 -2.8850 -0.0003 7 6 1.5300 -2.1639 1.2490 8 6 2.0405 -2.8848 2.4983 9 8 1.5645 -4.2322 2.4983 10 7 0.0651 -2.1638 1.2491 11 6 -0.6196 -1.6544 2.3200 12 1 -0.0795 -1.2522 3.1644 13 6 -2.0076 -1.6539 2.3198 14 7 -2.6658 -2.1436 1.2905 15 14 -2.9416 -0.9596 3.7810 16 1 -3.1896 -2.0403 4.7689 17 1 -4.2390 -0.4030 3.3201 18 1 -2.1388 0.1166 4.4156 19 6 2.0401 -0.7214 1.2492 20 1 -0.3633 0.3089 0.9801 21 1 -0.3633 0.6944 -0.7575 22 1 -0.3633 -1.0032 -0.2226 23 1 1.6766 -0.2072 -2.1392 24 1 3.1300 -0.7207 -1.2496 25 1 0.4400 -2.1637 -1.2494 26 1 1.8937 -2.6775 -2.1393 27 1 3.1300 -2.8850 -0.0003 28 1 1.6771 -3.9127 -0.0005 29 1 3.1305 -2.8846 2.4980 30 1 1.6768 -2.3713 3.3882 31 1 1.8505 -4.7503 3.2632 32 1 -0.4200 -2.5248 0.4905 33 1 -2.1808 -2.5045 0.5319 34 1 1.6768 -0.2075 2.1392 35 1 3.1301 -0.7217 1.2488 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053126577.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:25 Heat of formation + Delta-G solvation = -37.723361 kcal Electronic energy + Delta-G solvation = -15930.098541 eV Core-core repulsion = 13542.431145 eV Total energy + Delta-G solvation = -2387.667395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.38466 -35.82997 -33.78518 -31.67888 -30.82574 -28.39279 -25.75201 -24.86267 -23.43881 -21.76114 -19.68836 -18.04518 -16.95716 -16.50975 -15.56270 -14.83246 -14.11924 -13.54770 -13.48479 -13.37417 -12.87744 -12.42720 -11.94088 -11.89479 -11.69663 -11.27703 -10.85252 -10.67445 -10.37434 -10.25459 -10.01048 -9.98710 -9.74141 -9.68284 -9.42786 -9.30163 -8.87809 -8.46846 -6.72045 -5.96292 -2.92136 3.55842 3.60436 3.73900 4.73243 4.93232 5.26580 5.33941 5.39241 5.56754 5.73988 5.79540 5.96051 5.98230 6.03030 6.08279 6.17170 6.20631 6.34051 6.42187 6.46161 6.57579 6.68035 6.73898 6.84211 6.97030 7.01805 7.12531 7.30052 7.79388 7.91419 8.31380 8.87510 9.35466 10.21292 10.38943 11.51721 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029677 B = 0.013503 C = 0.011233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.277199 B = 2073.171278 C = 2492.103241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 H 0.048 0.952 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.111 4.111 7 C 0.211 3.789 8 C 0.074 3.926 9 O -0.554 6.554 10 N -0.710 5.710 11 C -0.309 4.309 12 H 0.060 0.940 13 C -0.045 4.045 14 N -0.946 5.946 15 Si 1.075 2.925 16 H -0.299 1.299 17 H -0.290 1.290 18 H -0.297 1.297 19 C -0.115 4.115 20 H 0.069 0.931 21 H 0.010 0.990 22 H 0.088 0.912 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.021 0.979 30 H 0.043 0.957 31 H 0.359 0.641 32 H 0.369 0.631 33 H 0.254 0.746 34 H 0.062 0.938 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.609 1.023 -1.284 10.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 H 0.066 0.934 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.149 4.149 7 C 0.119 3.881 8 C -0.006 4.006 9 O -0.357 6.357 10 N -0.354 5.354 11 C -0.440 4.440 12 H 0.078 0.922 13 C -0.242 4.242 14 N -0.592 5.592 15 Si 0.908 3.092 16 H -0.227 1.227 17 H -0.216 1.216 18 H -0.224 1.224 19 C -0.155 4.155 20 H 0.088 0.912 21 H 0.029 0.971 22 H 0.106 0.894 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.203 0.797 32 H 0.206 0.794 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.890 1.613 -1.047 9.096 hybrid contribution 1.792 -0.506 -0.080 1.864 sum 10.683 1.106 -1.127 10.799 Atomic orbital electron populations 1.22239 0.92970 1.03100 1.01346 1.20899 0.98033 0.96822 0.93740 0.93362 1.21539 0.99145 0.96032 0.98019 1.21553 1.01841 0.95331 0.96935 1.21614 0.99161 0.99626 0.94489 1.19476 0.86046 0.91499 0.91123 1.22721 0.94214 0.83166 1.00530 1.86599 1.77694 1.23619 1.47744 1.42584 0.98844 1.73157 1.20802 1.19810 0.91385 1.35473 0.97325 0.92250 1.25498 0.93232 1.01835 1.03640 1.70830 1.37229 1.43524 1.07609 0.83286 0.75851 0.75506 0.74605 1.22720 1.21631 1.22444 1.21918 0.97507 0.97706 0.98377 0.91214 0.97142 0.89384 0.92968 0.93231 0.91054 0.93247 0.92869 0.91569 0.96092 0.93879 0.79677 0.79435 0.93438 0.91968 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 7.52 37.16 0.28 -2.68 16 2 C -0.08 -1.38 3.19 -90.61 -0.29 -1.67 16 3 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.11 -1.76 5.45 -26.73 -0.15 -1.90 16 5 C -0.12 -2.01 5.57 -26.73 -0.15 -2.16 16 6 C -0.11 -1.98 4.65 -26.73 -0.12 -2.10 16 7 C 0.21 4.18 0.53 -131.82 -0.07 4.11 16 8 C 0.07 1.40 5.71 37.16 0.21 1.61 16 9 O -0.55 -10.79 12.85 -35.23 -0.45 -11.24 16 10 N -0.71 -16.89 2.53 -47.23 -0.12 -17.01 16 11 C -0.31 -8.20 6.56 -15.06 -0.10 -8.30 16 12 H 0.06 1.59 6.69 -52.48 -0.35 1.24 16 13 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 14 N -0.95 -28.70 13.70 55.49 0.76 -27.94 16 15 Si 1.07 26.06 29.92 -169.99 -5.09 20.98 16 16 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.12 -2.13 4.28 -26.73 -0.11 -2.24 16 20 H 0.07 1.67 6.54 -51.93 -0.34 1.33 16 21 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 22 H 0.09 2.03 3.23 -51.93 -0.17 1.86 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.36 5.26 -51.93 -0.27 1.09 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.27 7.68 -51.93 -0.40 0.87 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.87 7.03 -51.93 -0.37 0.51 16 31 H 0.36 5.19 9.12 45.56 0.42 5.60 16 32 H 0.37 9.39 4.28 -40.82 -0.17 9.22 16 33 H 0.25 7.66 6.77 -40.82 -0.28 7.38 16 34 H 0.06 1.25 7.54 -51.93 -0.39 0.86 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 258.56 15.07 3.90 3.90 Total: -1.00 -30.19 258.56 -6.10 -36.28 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -4.50 Total: 11.72 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -0.60 Total: -16.69 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.64 Total: -44.95 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.45 Total: -11.24 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.09 Total: 20.98 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.19 -6.10 -36.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053126577.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.441 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds