Wall clock time and date at job start Mon Mar 30 2020 04:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.47121 * 2 1 4 4 C 1.53006 * 109.46864 * 240.00706 * 2 1 3 5 5 C 1.53001 * 109.46846 * 299.99665 * 4 2 1 6 6 C 1.52998 * 109.47403 * 300.00363 * 5 4 2 7 7 C 1.52999 * 109.47151 * 60.00012 * 6 5 4 8 8 C 1.53005 * 109.47385 * 180.02562 * 7 6 5 9 9 O 1.42903 * 109.46283 * 299.99845 * 8 7 6 10 10 N 1.46498 * 109.47488 * 60.00222 * 7 6 5 11 11 C 1.36930 * 120.00384 * 175.44620 * 10 7 6 12 12 H 1.08004 * 119.99925 * 0.02562 * 11 10 7 13 13 C 1.38807 * 120.00101 * 179.97438 * 11 10 7 14 14 N 1.31622 * 119.99852 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00090 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47422 * 270.00303 * 15 13 11 17 17 H 1.48507 * 109.47013 * 150.00318 * 15 13 11 18 18 H 1.48502 * 109.46928 * 30.00628 * 15 13 11 19 19 C 1.52998 * 109.47088 * 120.00525 * 2 1 3 20 20 H 1.08998 * 109.46722 * 287.49218 * 1 2 3 21 21 H 1.08999 * 109.47169 * 47.48946 * 1 2 3 22 22 H 1.08996 * 109.47160 * 167.48853 * 1 2 3 23 23 H 1.08995 * 109.46947 * 59.99777 * 4 2 1 24 24 H 1.09002 * 109.46814 * 179.97438 * 4 2 1 25 25 H 1.09002 * 109.47194 * 60.00502 * 5 4 2 26 26 H 1.09002 * 109.46785 * 180.02562 * 5 4 2 27 27 H 1.09002 * 109.47058 * 300.00222 * 6 5 4 28 28 H 1.08992 * 109.47698 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.47153 * 59.99114 * 8 7 6 30 30 H 1.08995 * 109.47058 * 180.02562 * 8 7 6 31 31 H 0.96710 * 113.99439 * 179.97438 * 9 8 7 32 32 H 0.97005 * 119.99567 * 355.44884 * 10 7 6 33 33 H 0.96996 * 120.00142 * 359.97438 * 14 13 11 34 34 H 1.09004 * 109.47063 * 299.99280 * 19 2 1 35 35 H 1.09000 * 109.46585 * 179.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5300 -2.1636 -1.2494 6 6 2.0400 -2.8850 -0.0003 7 6 1.5300 -2.1639 1.2490 8 6 2.0405 -2.8848 2.4983 9 8 1.5645 -4.2322 2.4983 10 7 0.0651 -2.1638 1.2491 11 6 -0.6196 -1.6544 2.3200 12 1 -0.0795 -1.2522 3.1644 13 6 -2.0076 -1.6539 2.3198 14 7 -2.6658 -2.1436 1.2905 15 14 -2.9416 -0.9596 3.7810 16 1 -3.1896 -2.0403 4.7689 17 1 -4.2390 -0.4030 3.3201 18 1 -2.1388 0.1166 4.4156 19 6 2.0401 -0.7214 1.2492 20 1 -0.3633 0.3089 0.9801 21 1 -0.3633 0.6944 -0.7575 22 1 -0.3633 -1.0032 -0.2226 23 1 1.6766 -0.2072 -2.1392 24 1 3.1300 -0.7207 -1.2496 25 1 0.4400 -2.1637 -1.2494 26 1 1.8937 -2.6775 -2.1393 27 1 3.1300 -2.8850 -0.0003 28 1 1.6771 -3.9127 -0.0005 29 1 3.1305 -2.8846 2.4980 30 1 1.6768 -2.3713 3.3882 31 1 1.8505 -4.7503 3.2632 32 1 -0.4200 -2.5248 0.4905 33 1 -2.1808 -2.5045 0.5319 34 1 1.6768 -0.2075 2.1392 35 1 3.1301 -0.7217 1.2488 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053126577.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:25 Heat of formation + Delta-G solvation = -58.680346 kcal Electronic energy + Delta-G solvation = -15931.007304 eV Core-core repulsion = 13542.431145 eV Total energy + Delta-G solvation = -2388.576158 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.91658 -37.31520 -35.67247 -33.33043 -32.35161 -30.21924 -27.33777 -26.36242 -25.46073 -23.18890 -21.23757 -19.70890 -18.80510 -18.00113 -17.25186 -16.32559 -15.88829 -15.38920 -15.08121 -14.88305 -14.43225 -13.90614 -13.56844 -13.38578 -13.18321 -13.01375 -12.56131 -12.33544 -12.13599 -11.86834 -11.84107 -11.61714 -11.29349 -11.17228 -11.09151 -10.89094 -10.52988 -10.42027 -8.69244 -8.17224 -5.05037 1.57786 1.67747 1.80490 2.78374 3.50394 3.57835 3.73969 3.97290 4.03414 4.08552 4.34843 4.51298 4.52675 4.57760 4.68698 4.75447 4.83685 4.88500 4.98451 5.05617 5.13231 5.17818 5.22908 5.32042 5.49513 5.55135 5.62323 5.65511 5.77681 6.06366 6.68294 7.04283 7.29495 8.19394 8.34312 9.34492 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029677 B = 0.013503 C = 0.011233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.277199 B = 2073.171278 C = 2492.103241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.076 4.076 3 H 0.066 0.934 4 C -0.103 4.103 5 C -0.118 4.118 6 C -0.104 4.104 7 C 0.195 3.805 8 C 0.075 3.925 9 O -0.578 6.578 10 N -0.715 5.715 11 C -0.280 4.280 12 H 0.057 0.943 13 C -0.107 4.107 14 N -0.983 5.983 15 Si 1.115 2.885 16 H -0.295 1.295 17 H -0.300 1.300 18 H -0.277 1.277 19 C -0.111 4.111 20 H 0.033 0.967 21 H 0.014 0.986 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.023 0.977 31 H 0.380 0.620 32 H 0.358 0.642 33 H 0.241 0.759 34 H 0.039 0.961 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.214 1.437 -1.397 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.094 4.094 3 H 0.084 0.916 4 C -0.140 4.140 5 C -0.156 4.156 6 C -0.142 4.142 7 C 0.105 3.895 8 C -0.005 4.005 9 O -0.383 6.383 10 N -0.358 5.358 11 C -0.412 4.412 12 H 0.075 0.925 13 C -0.298 4.298 14 N -0.633 5.633 15 Si 0.943 3.057 16 H -0.222 1.222 17 H -0.227 1.227 18 H -0.203 1.203 19 C -0.150 4.150 20 H 0.052 0.948 21 H 0.033 0.967 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.227 0.773 32 H 0.193 0.807 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.566 2.026 -1.134 11.796 hybrid contribution 1.086 -0.654 -0.049 1.269 sum 12.652 1.372 -1.183 12.781 Atomic orbital electron populations 1.22095 0.95946 1.01782 0.99138 1.20910 0.95274 0.98290 0.94920 0.91598 1.21496 1.00778 0.94742 0.96982 1.21534 0.99963 0.96485 0.97585 1.21553 1.00730 0.98195 0.93677 1.19892 0.83691 0.92943 0.92960 1.22682 0.96246 0.82675 0.98878 1.86549 1.78419 1.24052 1.49329 1.42706 1.00779 1.72768 1.19573 1.19961 0.91321 1.32653 0.97304 0.92545 1.26574 0.94853 1.03225 1.05168 1.70932 1.37361 1.46580 1.08420 0.82741 0.74715 0.75585 0.72619 1.22241 1.22707 1.20292 1.21861 0.99476 0.96108 0.97572 0.94823 0.96737 0.91334 0.92031 0.90275 0.94216 0.90817 0.89853 0.93497 0.92333 0.95871 0.77264 0.80699 0.94828 0.94251 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.63 7.52 71.98 0.54 -5.09 16 2 C -0.08 -2.54 3.19 -10.79 -0.03 -2.57 16 3 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 4 C -0.10 -2.90 5.45 30.60 0.17 -2.73 16 5 C -0.12 -3.71 5.57 30.59 0.17 -3.54 16 6 C -0.10 -3.42 4.65 30.59 0.14 -3.28 16 7 C 0.20 7.42 0.53 3.61 0.00 7.42 16 8 C 0.07 2.67 5.71 71.98 0.41 3.08 16 9 O -0.58 -21.65 12.85 -148.98 -1.91 -23.56 16 10 N -0.72 -34.37 2.53 -303.35 -0.77 -35.14 16 11 C -0.28 -15.10 6.56 84.03 0.55 -14.54 16 12 H 0.06 3.04 6.69 -2.91 -0.02 3.02 16 13 C -0.11 -6.19 5.50 84.86 0.47 -5.72 16 14 N -0.98 -61.76 13.70 21.65 0.30 -61.46 16 15 Si 1.11 53.56 29.92 68.60 2.05 55.61 16 16 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 17 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 C -0.11 -3.80 4.28 30.59 0.13 -3.67 16 20 H 0.03 1.63 6.54 -2.39 -0.02 1.61 16 21 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 22 H 0.07 3.23 3.23 -2.39 -0.01 3.23 16 23 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.04 1.51 5.26 -2.39 -0.01 1.49 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.05 1.73 7.68 -2.39 -0.02 1.71 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 30 H 0.02 0.90 7.03 -2.39 -0.02 0.89 16 31 H 0.38 10.31 9.12 -74.05 -0.68 9.63 16 32 H 0.36 18.83 4.28 -92.70 -0.40 18.43 16 33 H 0.24 15.22 6.77 -92.71 -0.63 14.59 16 34 H 0.04 1.51 7.54 -2.39 -0.02 1.50 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -66.28 258.56 2.37 -63.90 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.16 Total: 31.30 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 2.55 Total: -30.65 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -0.47 Total: -96.60 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -1.91 Total: -23.56 kcal Atomic # 14 Polarization: 53.56 SS G_CDS: 2.05 Total: 55.61 kcal Total: -66.28 2.37 -63.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053126577.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.223 kcal (2) G-P(sol) polarization free energy of solvation -66.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds