Wall clock time and date at job start Mon Mar 30 2020 03:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47407 * 2 1 4 4 N 1.46504 * 109.47234 * 180.02562 * 3 2 1 5 5 C 1.36933 * 119.99943 * 269.99948 * 4 3 2 6 6 H 1.08002 * 119.99517 * 141.87570 * 5 4 3 7 7 C 1.38804 * 120.00232 * 321.87794 * 5 4 3 8 8 N 1.31615 * 120.00196 * 156.84661 * 7 5 4 9 9 Si 1.86804 * 119.99957 * 336.84060 * 7 5 4 10 10 H 1.48493 * 109.47237 * 95.38588 * 9 7 5 11 11 H 1.48502 * 109.47015 * 215.38627 * 9 7 5 12 12 H 1.48503 * 109.46910 * 335.38649 * 9 7 5 13 13 C 1.46505 * 119.99734 * 90.00164 * 4 3 2 14 14 C 1.53177 * 109.54338 * 125.55933 * 13 4 3 15 15 C 1.53084 * 109.16328 * 176.84388 * 14 13 4 16 16 O 1.42906 * 109.41832 * 302.38859 * 15 14 13 17 17 C 1.42902 * 114.09201 * 61.15784 * 16 15 14 18 18 C 1.53090 * 109.41902 * 298.84465 * 17 16 15 19 19 H 1.09002 * 109.47342 * 59.99325 * 1 2 3 20 20 H 1.08990 * 109.47513 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46603 * 300.00083 * 1 2 3 22 22 H 1.09003 * 109.47090 * 240.00122 * 2 1 3 23 23 H 1.09004 * 109.47786 * 120.00391 * 2 1 3 24 24 H 1.08998 * 109.47066 * 60.00711 * 3 2 1 25 25 H 1.08997 * 109.47169 * 300.00244 * 3 2 1 26 26 H 0.97006 * 120.00322 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.61983 * 5.33387 * 13 4 3 28 28 H 1.08998 * 109.52354 * 296.75433 * 14 13 4 29 29 H 1.09006 * 109.52301 * 56.94025 * 14 13 4 30 30 H 1.09008 * 109.48073 * 182.40902 * 15 14 13 31 31 H 1.08998 * 109.48105 * 62.37687 * 15 14 13 32 32 H 1.09000 * 109.47945 * 178.85951 * 17 16 15 33 33 H 1.09002 * 109.49266 * 58.83444 * 17 16 15 34 34 H 1.09004 * 109.52065 * 297.70253 * 18 17 16 35 35 H 1.08997 * 109.52256 * 177.51991 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.4423 1.1850 6 1 5.0975 0.8647 1.2842 7 6 3.7188 2.1842 2.2592 8 7 4.0667 1.8598 3.4864 9 14 2.5905 3.6433 1.9631 10 1 1.1766 3.2129 2.1067 11 1 2.8871 4.7077 2.9553 12 1 2.8110 4.1693 0.5920 13 6 4.2370 1.4426 -1.2697 14 6 5.2202 2.6169 -1.2940 15 6 6.0353 2.5632 -2.5887 16 8 6.7132 1.3078 -2.6716 17 6 5.8421 0.1754 -2.7005 18 6 5.0191 0.1331 -1.4103 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0275 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.6768 1.9563 0.8900 25 1 1.6767 1.9563 -0.8899 26 1 3.7369 2.3781 4.2371 27 1 3.5343 1.5383 -2.0975 28 1 4.6678 3.5555 -1.2500 29 1 5.8914 2.5478 -0.4379 30 1 6.7663 3.3718 -2.5919 31 1 5.3678 2.6730 -3.4433 32 1 6.4337 -0.7362 -2.7843 33 1 5.1720 0.2537 -3.5566 34 1 5.6862 0.0138 -0.5565 35 1 4.3230 -0.7046 -1.4496 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068955327.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:27 Heat of formation + Delta-G solvation = -57.888386 kcal Electronic energy + Delta-G solvation = -15329.449891 eV Core-core repulsion = 12940.908074 eV Total energy + Delta-G solvation = -2388.541817 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31817 -37.95875 -34.57775 -34.13171 -31.89984 -31.71458 -27.38568 -26.36054 -24.32260 -23.45530 -22.22753 -20.98279 -18.48161 -17.53354 -16.85600 -16.74673 -16.15447 -15.64173 -15.50915 -14.97144 -14.75705 -14.28926 -14.10726 -13.92252 -13.24124 -13.11532 -12.87227 -12.43808 -12.36802 -12.14298 -12.06029 -11.99184 -11.81371 -11.50598 -11.26817 -10.96843 -10.63767 -10.36909 -8.69880 -8.18101 -5.54486 1.28432 1.38702 1.49467 2.42515 3.00126 3.09089 3.32789 4.04477 4.08110 4.17162 4.21975 4.35416 4.41981 4.45603 4.55122 4.63315 4.68046 4.75782 4.81093 4.84933 4.87208 5.06475 5.14478 5.19450 5.23855 5.39717 5.48304 5.50937 5.59609 5.99229 6.22119 6.36061 7.04231 7.68390 8.09345 9.02321 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.012646 C = 0.010161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.987998 B = 2213.534891 C = 2754.889520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.129 3.871 4 N -0.613 5.613 5 C -0.235 4.235 6 H 0.035 0.965 7 C -0.022 4.022 8 N -0.952 5.952 9 Si 0.938 3.062 10 H -0.276 1.276 11 H -0.313 1.313 12 H -0.256 1.256 13 C 0.169 3.831 14 C -0.158 4.158 15 C 0.070 3.930 16 O -0.406 6.406 17 C 0.068 3.932 18 C -0.156 4.156 19 H 0.069 0.931 20 H 0.065 0.935 21 H 0.039 0.961 22 H 0.065 0.935 23 H 0.031 0.969 24 H 0.029 0.971 25 H 0.065 0.935 26 H 0.260 0.740 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 -0.708 -14.271 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.005 3.995 4 N -0.334 5.334 5 C -0.366 4.366 6 H 0.053 0.947 7 C -0.217 4.217 8 N -0.597 5.597 9 Si 0.767 3.233 10 H -0.204 1.204 11 H -0.243 1.243 12 H -0.180 1.180 13 C 0.064 3.936 14 C -0.197 4.197 15 C -0.007 4.007 16 O -0.325 6.325 17 C -0.009 4.009 18 C -0.196 4.196 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.058 0.942 22 H 0.084 0.916 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.290 -0.675 -14.133 14.526 hybrid contribution -0.525 0.671 1.060 1.360 sum -3.815 -0.004 -13.073 13.618 Atomic orbital electron populations 1.21701 0.94633 1.02131 1.01650 1.21923 0.96099 0.98243 1.00826 1.21372 0.83168 0.95872 0.99095 1.44375 1.00980 1.86351 1.01735 1.18398 1.08010 1.21505 0.88638 0.94683 1.26037 1.00551 1.00277 0.94873 1.70014 1.49900 1.40948 0.98822 0.85927 0.78798 0.80829 0.77725 1.20350 1.24253 1.18043 1.20634 0.92569 0.92949 0.87479 1.22510 0.99050 0.99533 0.98618 1.22645 0.96470 0.85867 0.95741 1.87850 1.34949 1.15142 1.94559 1.22661 0.93240 0.89031 0.95924 1.22544 0.99386 0.99438 0.98200 0.91228 0.91611 0.94179 0.91624 0.95009 0.95303 0.91702 0.93092 0.90293 0.92095 0.93925 0.88166 0.91101 0.88068 0.91063 0.94630 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 9.91 71.98 0.71 -3.37 16 2 C -0.13 -4.73 6.26 30.59 0.19 -4.54 16 3 C 0.13 5.30 4.51 86.38 0.39 5.69 16 4 N -0.61 -27.97 2.01 -677.37 -1.36 -29.33 16 5 C -0.24 -13.25 8.44 84.03 0.71 -12.54 16 6 H 0.04 2.25 7.17 -2.91 -0.02 2.22 16 7 C -0.02 -1.27 5.28 84.86 0.45 -0.82 16 8 N -0.95 -60.45 13.97 21.65 0.30 -60.15 16 9 Si 0.94 46.55 25.14 68.60 1.72 48.28 16 10 H -0.28 -13.10 6.66 99.48 0.66 -12.44 16 11 H -0.31 -15.95 7.11 99.48 0.71 -15.25 16 12 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.17 6.33 2.73 45.11 0.12 6.46 16 14 C -0.16 -5.83 5.36 30.68 0.16 -5.66 16 15 C 0.07 1.99 6.84 72.01 0.49 2.48 16 16 O -0.41 -12.88 10.77 -148.98 -1.60 -14.49 16 17 C 0.07 1.88 6.84 72.01 0.49 2.37 16 18 C -0.16 -5.47 5.50 30.68 0.17 -5.30 16 19 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 20 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 22 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.03 1.33 3.41 -2.39 -0.01 1.32 16 25 H 0.06 2.26 7.88 -2.39 -0.02 2.25 16 26 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 27 H 0.08 2.51 7.77 -2.39 -0.02 2.49 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.04 1.90 7.45 -2.38 -0.02 1.88 16 30 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.03 1.52 7.10 -2.39 -0.02 1.50 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -66.67 273.08 3.95 -62.72 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.99 Total: 8.20 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 3.89 Total: -15.24 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -1.06 Total: -89.48 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -1.60 Total: -14.49 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.72 Total: 48.28 kcal Total: -66.67 3.95 -62.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068955327.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.835 kcal (2) G-P(sol) polarization free energy of solvation -66.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds