Wall clock time and date at job start Mon Mar 30 2020 03:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.47043 * 2 1 4 4 N 1.46903 * 109.46845 * 119.99498 * 2 1 3 5 5 C 1.46904 * 110.99325 * 69.68806 * 4 2 1 6 6 C 1.50703 * 109.47258 * 75.96275 * 5 4 2 7 7 H 1.07997 * 119.99664 * 355.38702 * 6 5 4 8 8 C 1.37877 * 119.99613 * 175.39005 * 6 5 4 9 9 N 1.31514 * 120.00125 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99803 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.46811 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47280 * 119.99272 * 10 8 6 13 13 H 1.48501 * 109.47090 * 239.99870 * 10 8 6 14 14 C 1.46892 * 111.00228 * 305.73074 * 4 2 1 15 15 H 1.08990 * 110.80839 * 324.36791 * 14 4 2 16 16 C 1.54815 * 110.90659 * 200.73535 * 14 4 2 17 17 C 1.54096 * 104.18780 * 220.92304 * 16 14 4 18 18 O 1.43742 * 107.29939 * 357.97041 * 17 16 14 19 19 C 1.44389 * 106.96980 * 26.51452 * 18 17 16 20 20 H 1.08995 * 109.47145 * 306.22876 * 1 2 3 21 21 H 1.09001 * 109.46563 * 66.22643 * 1 2 3 22 22 H 1.08989 * 109.47251 * 186.22646 * 1 2 3 23 23 H 1.08992 * 109.47201 * 239.99935 * 2 1 3 24 24 H 1.08996 * 109.47165 * 182.96949 * 3 2 1 25 25 H 1.08994 * 109.46986 * 302.97360 * 3 2 1 26 26 H 1.09002 * 109.46667 * 62.96951 * 3 2 1 27 27 H 1.08998 * 109.47351 * 315.95414 * 5 4 2 28 28 H 1.09004 * 109.46472 * 195.96063 * 5 4 2 29 29 H 0.97001 * 119.99449 * 180.02562 * 9 8 6 30 30 H 1.08997 * 110.48586 * 339.59927 * 16 14 4 31 31 H 1.08997 * 110.48646 * 102.11579 * 16 14 4 32 32 H 1.09007 * 109.87963 * 117.39598 * 17 16 14 33 33 H 1.09000 * 109.88025 * 238.39487 * 17 16 14 34 34 H 1.09003 * 110.61202 * 201.43773 * 19 18 17 35 35 H 1.08999 * 110.61651 * 78.44349 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.7462 -2.1338 1.1237 6 6 2.7238 -2.7815 0.1772 7 1 3.4246 -2.1730 -0.3751 8 6 2.7234 -4.1508 0.0163 9 7 1.8703 -4.8918 0.6892 10 14 3.9357 -4.9538 -1.1564 11 1 4.7815 -3.9082 -1.7864 12 1 4.7972 -5.9018 -0.4053 13 1 3.1917 -5.6894 -2.2102 14 6 1.4401 -0.1099 2.4171 15 1 1.3205 0.9683 2.3115 16 6 2.3017 -0.4514 3.6571 17 6 1.2709 -0.7747 4.7559 18 8 -0.0349 -0.5783 4.1881 19 6 0.0891 -0.7855 2.7645 20 1 -0.3633 0.6073 0.8289 21 1 -0.3632 0.4143 -0.9405 22 1 -0.3633 -1.0215 0.1114 23 1 1.8934 -0.5138 -0.8899 24 1 3.1287 1.4431 -0.0532 25 1 1.6338 1.9715 -0.8621 26 1 1.7208 1.9407 0.9155 27 1 0.7304 -2.2923 0.7617 28 1 1.8520 -2.5762 2.1143 29 1 1.8703 -5.8552 0.5763 30 1 2.9310 -1.3186 3.4573 31 1 2.9128 0.4043 3.9444 32 1 1.3836 -1.8104 5.0768 33 1 1.4125 -0.1063 5.6052 34 1 -0.7303 -0.3010 2.2334 35 1 0.1215 -1.8502 2.5330 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069622554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:59 Heat of formation + Delta-G solvation = -39.389768 kcal Electronic energy + Delta-G solvation = -15392.878641 eV Core-core repulsion = 13005.138985 eV Total energy + Delta-G solvation = -2387.739656 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.57859 -36.75486 -32.85092 -31.72070 -29.88003 -28.20004 -26.92936 -25.81887 -22.84716 -21.68596 -20.93675 -18.46611 -16.76735 -16.03985 -15.48371 -14.83978 -14.50879 -14.27558 -13.82494 -13.27595 -13.07380 -12.86265 -12.11794 -11.80241 -11.52393 -11.41185 -11.24259 -11.02616 -10.81730 -10.70122 -10.56210 -10.47980 -10.32832 -10.03232 -9.58268 -9.32898 -9.05662 -8.43767 -7.21486 -6.03800 -4.04850 3.29744 3.37569 3.42233 4.27925 4.44149 4.95795 5.13895 5.25442 5.31683 5.48288 5.51130 5.66835 5.73984 5.75893 5.92935 6.01257 6.09359 6.11234 6.16143 6.29344 6.35175 6.41001 6.51997 6.62993 6.69795 6.81390 7.20045 7.27907 7.34638 7.81092 8.10264 8.20323 8.52784 9.02992 9.59351 11.06516 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028580 B = 0.010648 C = 0.008950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.454486 B = 2628.848902 C = 3127.847234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.080 3.920 3 C -0.142 4.142 4 N -0.517 5.517 5 C 0.187 3.813 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.054 3.946 15 H 0.083 0.917 16 C -0.147 4.147 17 C 0.048 3.952 18 O -0.389 6.389 19 C 0.004 3.996 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.048 0.952 27 H -0.001 1.001 28 H 0.034 0.966 29 H 0.260 0.740 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 9.302 2.426 9.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.029 4.029 3 C -0.199 4.199 4 N -0.240 5.240 5 C 0.062 3.938 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.056 4.056 15 H 0.101 0.899 16 C -0.185 4.185 17 C -0.029 4.029 18 O -0.307 6.307 19 C -0.074 4.074 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.108 0.892 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.017 0.983 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.011 9.226 2.590 9.636 hybrid contribution -0.092 -0.810 -0.726 1.091 sum -1.103 8.417 1.864 8.691 Atomic orbital electron populations 1.22722 0.98791 1.02259 1.00938 1.21603 0.91756 0.94183 0.95363 1.21884 1.01545 0.96078 1.00404 1.62403 1.56421 1.06240 0.98983 1.19852 0.95441 0.80801 0.97715 1.21207 1.17830 0.91365 1.23823 0.91900 1.24978 0.95991 0.97350 0.96300 1.69961 1.36592 1.05441 1.41877 0.86475 0.81085 0.79338 0.80726 1.19675 1.21072 1.21169 1.23211 0.91578 0.98866 0.91960 0.89871 1.22895 0.98392 1.03017 0.94179 1.23104 0.82983 1.00417 0.96411 1.88765 1.28958 1.92029 1.20969 1.24863 0.99090 1.02382 0.81038 0.92987 0.93132 0.91735 0.89179 0.92280 0.93230 0.93327 0.98334 0.94849 0.92994 0.89265 0.91191 0.92709 0.90717 0.89456 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.14 7.50 37.16 0.28 -2.86 16 2 C 0.08 1.46 2.83 -67.71 -0.19 1.27 16 3 C -0.14 -2.13 9.22 37.16 0.34 -1.79 16 4 N -0.52 -10.63 4.33 -217.75 -0.94 -11.57 16 5 C 0.19 4.62 2.96 -4.97 -0.01 4.61 16 6 C -0.50 -13.79 8.62 -34.44 -0.30 -14.09 16 7 H 0.06 1.72 7.67 -52.49 -0.40 1.32 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 10 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 14 C 0.05 0.97 2.39 -65.70 -0.16 0.81 16 15 H 0.08 1.38 5.75 -51.93 -0.30 1.08 16 16 C -0.15 -2.49 6.39 -25.20 -0.16 -2.65 16 17 C 0.05 0.78 7.70 37.73 0.29 1.07 16 18 O -0.39 -7.20 11.52 -35.23 -0.41 -7.61 16 19 C 0.00 0.07 5.53 38.21 0.21 0.28 16 20 H 0.05 0.80 5.58 -51.93 -0.29 0.51 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 1.21 5.97 -51.94 -0.31 0.90 16 23 H 0.09 1.83 7.35 -51.93 -0.38 1.45 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.69 6.16 -51.93 -0.32 0.37 16 27 H 0.00 -0.02 5.33 -51.93 -0.28 -0.30 16 28 H 0.03 0.90 6.30 -51.93 -0.33 0.57 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.09 1.71 7.22 -51.93 -0.38 1.34 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.50 5.77 -51.93 -0.30 1.20 16 35 H 0.08 1.73 5.40 -51.93 -0.28 1.45 16 LS Contribution 264.26 15.07 3.98 3.98 Total: -1.00 -28.84 264.26 -6.68 -35.52 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.23 Total: 0.70 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 0.20 Total: -11.91 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.21 Total: -37.11 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.41 Total: -7.61 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.84 -6.68 -35.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069622554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.873 kcal (2) G-P(sol) polarization free energy of solvation -28.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds