Wall clock time and date at job start Mon Mar 30 2020 03:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.47043 * 2 1 4 4 N 1.46903 * 109.46845 * 119.99498 * 2 1 3 5 5 C 1.46904 * 110.99325 * 69.68806 * 4 2 1 6 6 C 1.50703 * 109.47258 * 75.96275 * 5 4 2 7 7 H 1.07997 * 119.99664 * 355.38702 * 6 5 4 8 8 C 1.37877 * 119.99613 * 175.39005 * 6 5 4 9 9 N 1.31514 * 120.00125 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99803 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.46811 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47280 * 119.99272 * 10 8 6 13 13 H 1.48501 * 109.47090 * 239.99870 * 10 8 6 14 14 C 1.46892 * 111.00228 * 305.73074 * 4 2 1 15 15 H 1.08990 * 110.80839 * 324.36791 * 14 4 2 16 16 C 1.54815 * 110.90659 * 200.73535 * 14 4 2 17 17 C 1.54096 * 104.18780 * 220.92304 * 16 14 4 18 18 O 1.43742 * 107.29939 * 357.97041 * 17 16 14 19 19 C 1.44389 * 106.96980 * 26.51452 * 18 17 16 20 20 H 1.08995 * 109.47145 * 306.22876 * 1 2 3 21 21 H 1.09001 * 109.46563 * 66.22643 * 1 2 3 22 22 H 1.08989 * 109.47251 * 186.22646 * 1 2 3 23 23 H 1.08992 * 109.47201 * 239.99935 * 2 1 3 24 24 H 1.08996 * 109.47165 * 182.96949 * 3 2 1 25 25 H 1.08994 * 109.46986 * 302.97360 * 3 2 1 26 26 H 1.09002 * 109.46667 * 62.96951 * 3 2 1 27 27 H 1.08998 * 109.47351 * 315.95414 * 5 4 2 28 28 H 1.09004 * 109.46472 * 195.96063 * 5 4 2 29 29 H 0.97001 * 119.99449 * 180.02562 * 9 8 6 30 30 H 1.08997 * 110.48586 * 339.59927 * 16 14 4 31 31 H 1.08997 * 110.48646 * 102.11579 * 16 14 4 32 32 H 1.09007 * 109.87963 * 117.39598 * 17 16 14 33 33 H 1.09000 * 109.88025 * 238.39487 * 17 16 14 34 34 H 1.09003 * 110.61202 * 201.43773 * 19 18 17 35 35 H 1.08999 * 110.61651 * 78.44349 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.7462 -2.1338 1.1237 6 6 2.7238 -2.7815 0.1772 7 1 3.4246 -2.1730 -0.3751 8 6 2.7234 -4.1508 0.0163 9 7 1.8703 -4.8918 0.6892 10 14 3.9357 -4.9538 -1.1564 11 1 4.7815 -3.9082 -1.7864 12 1 4.7972 -5.9018 -0.4053 13 1 3.1917 -5.6894 -2.2102 14 6 1.4401 -0.1099 2.4171 15 1 1.3205 0.9683 2.3115 16 6 2.3017 -0.4514 3.6571 17 6 1.2709 -0.7747 4.7559 18 8 -0.0349 -0.5783 4.1881 19 6 0.0891 -0.7855 2.7645 20 1 -0.3633 0.6073 0.8289 21 1 -0.3632 0.4143 -0.9405 22 1 -0.3633 -1.0215 0.1114 23 1 1.8934 -0.5138 -0.8899 24 1 3.1287 1.4431 -0.0532 25 1 1.6338 1.9715 -0.8621 26 1 1.7208 1.9407 0.9155 27 1 0.7304 -2.2923 0.7617 28 1 1.8520 -2.5762 2.1143 29 1 1.8703 -5.8552 0.5763 30 1 2.9310 -1.3186 3.4573 31 1 2.9128 0.4043 3.9444 32 1 1.3836 -1.8104 5.0768 33 1 1.4125 -0.1063 5.6052 34 1 -0.7303 -0.3010 2.2334 35 1 0.1215 -1.8502 2.5330 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069622554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:58 Heat of formation + Delta-G solvation = -59.273973 kcal Electronic energy + Delta-G solvation = -15393.740885 eV Core-core repulsion = 13005.138985 eV Total energy + Delta-G solvation = -2388.601900 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.07623 -38.26393 -34.91204 -33.19610 -31.46790 -29.80232 -28.36822 -27.52964 -24.67611 -23.19811 -22.37330 -20.04377 -18.57913 -17.74028 -17.08697 -16.55263 -15.99808 -15.96524 -15.28116 -14.88064 -14.55282 -14.37326 -13.99268 -13.22716 -13.00063 -12.91733 -12.78430 -12.63863 -12.56387 -12.31629 -12.20899 -12.10952 -11.79686 -11.65688 -11.21868 -11.10255 -10.66585 -10.56665 -8.89714 -8.18161 -6.27572 1.39386 1.40502 1.53479 2.40002 2.85188 3.13883 3.46541 3.73489 3.84614 4.08434 4.18041 4.29082 4.31312 4.39514 4.52680 4.66189 4.72019 4.80927 4.83874 4.89841 5.01548 5.02413 5.11819 5.18059 5.28121 5.29359 5.42746 5.55363 5.69707 5.83525 6.11949 6.46460 6.68959 6.89225 7.41719 8.91673 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028580 B = 0.010648 C = 0.008950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.454486 B = 2628.848902 C = 3127.847234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 C -0.131 4.131 4 N -0.524 5.524 5 C 0.209 3.791 6 C -0.518 4.518 7 H 0.059 0.941 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.054 3.946 15 H 0.111 0.889 16 C -0.144 4.144 17 C 0.046 3.954 18 O -0.397 6.397 19 C 0.010 3.990 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.033 0.967 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.062 0.938 27 H -0.023 1.023 28 H 0.003 0.997 29 H 0.263 0.737 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.044 0.956 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.788 11.255 2.226 11.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.036 4.036 3 C -0.188 4.188 4 N -0.247 5.247 5 C 0.083 3.917 6 C -0.556 4.556 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.576 5.576 10 Si 0.789 3.211 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.055 4.055 15 H 0.129 0.871 16 C -0.182 4.182 17 C -0.031 4.031 18 O -0.316 6.316 19 C -0.067 4.067 20 H 0.087 0.913 21 H 0.092 0.908 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.081 0.919 27 H -0.006 1.006 28 H 0.021 0.979 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.503 11.200 2.391 11.464 hybrid contribution -0.271 -1.392 -0.634 1.554 sum -0.774 9.808 1.757 9.994 Atomic orbital electron populations 1.22612 0.97515 1.00829 1.02888 1.21704 0.92891 0.95797 0.93190 1.21794 1.01249 0.93480 1.02283 1.62315 1.57284 1.04082 1.01069 1.19385 0.93578 0.83553 0.95149 1.21543 1.18079 0.91876 1.24145 0.92297 1.25842 0.97753 0.98029 0.97937 1.70088 1.38296 1.05741 1.43440 0.85417 0.78794 0.78348 0.78563 1.18783 1.20613 1.20573 1.23341 0.91172 0.99887 0.91122 0.87149 1.22893 0.98382 1.02914 0.94048 1.23270 0.81757 1.00948 0.97122 1.88754 1.30322 1.91853 1.20653 1.24698 1.00177 1.00237 0.81624 0.91288 0.90843 0.94813 0.91993 0.92751 0.90736 0.91906 1.00557 0.97905 0.92863 0.92368 0.88120 0.93744 0.86988 0.88009 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.79 7.50 71.98 0.54 -5.25 16 2 C 0.07 2.59 2.83 44.92 0.13 2.72 16 3 C -0.13 -3.53 9.22 71.98 0.66 -2.87 16 4 N -0.52 -21.59 4.33 -842.84 -3.65 -25.24 16 5 C 0.21 10.82 2.96 85.56 0.25 11.07 16 6 C -0.52 -29.16 8.62 25.60 0.22 -28.94 16 7 H 0.06 3.29 7.67 -2.91 -0.02 3.27 16 8 C 0.00 0.12 5.46 84.65 0.46 0.58 16 9 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 10 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 11 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 14 C 0.05 1.89 2.39 46.22 0.11 2.00 16 15 H 0.11 3.28 5.75 -2.39 -0.01 3.27 16 16 C -0.14 -4.72 6.39 31.58 0.20 -4.52 16 17 C 0.05 1.42 7.70 72.35 0.56 1.97 16 18 O -0.40 -14.28 11.52 -148.98 -1.72 -16.00 16 19 C 0.01 0.39 5.53 72.67 0.40 0.79 16 20 H 0.07 1.96 5.58 -2.39 -0.01 1.95 16 21 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.03 1.28 5.97 -2.39 -0.01 1.27 16 23 H 0.06 2.54 7.35 -2.39 -0.02 2.52 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.52 6.16 -2.39 -0.01 1.51 16 27 H -0.02 -1.28 5.33 -2.39 -0.01 -1.29 16 28 H 0.00 0.17 6.30 -2.39 -0.02 0.15 16 29 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.06 2.27 7.22 -2.39 -0.02 2.25 16 31 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.04 1.45 8.14 -2.38 -0.02 1.44 16 33 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.10 3.42 5.77 -2.39 -0.01 3.41 16 35 H 0.04 1.89 5.40 -2.39 -0.01 1.88 16 Total: -1.00 -63.47 264.26 1.55 -61.92 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.07 Total: 11.29 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 3.54 Total: -22.45 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -3.36 Total: -81.29 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -1.72 Total: -16.00 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.47 1.55 -61.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069622554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.645 kcal (2) G-P(sol) polarization free energy of solvation -63.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds