Wall clock time and date at job start Mon Mar 30 2020 03:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47202 * 2 1 4 4 N 1.46903 * 109.47200 * 119.99800 * 2 1 3 5 5 C 1.46895 * 111.00022 * 170.30155 * 4 2 1 6 6 C 1.50699 * 109.47475 * 293.95340 * 5 4 2 7 7 H 1.08002 * 120.00069 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00051 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99652 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00047 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47120 * 269.99953 * 10 8 6 12 12 H 1.48504 * 109.46759 * 29.99943 * 10 8 6 13 13 H 1.48500 * 109.47040 * 149.99753 * 10 8 6 14 14 C 1.46897 * 110.99945 * 294.26088 * 4 2 1 15 15 H 1.08999 * 110.45793 * 37.52217 * 14 4 2 16 16 C 1.54509 * 110.51071 * 160.12880 * 14 4 2 17 17 C 1.54478 * 104.06432 * 118.64107 * 16 14 4 18 18 O 1.44431 * 104.80186 * 23.97978 * 17 16 14 19 19 C 1.44421 * 105.27360 * 319.48648 * 18 17 16 20 20 H 1.09004 * 109.47155 * 300.00576 * 1 2 3 21 21 H 1.09003 * 109.46876 * 59.99924 * 1 2 3 22 22 H 1.08993 * 109.47379 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47680 * 239.99960 * 2 1 3 24 24 H 1.09005 * 109.46866 * 166.94513 * 3 2 1 25 25 H 1.09000 * 109.47073 * 286.94027 * 3 2 1 26 26 H 1.08998 * 109.47160 * 46.94615 * 3 2 1 27 27 H 1.09005 * 109.47097 * 173.95740 * 5 4 2 28 28 H 1.09004 * 109.47324 * 53.96016 * 5 4 2 29 29 H 0.97000 * 119.99675 * 180.02562 * 9 8 6 30 30 H 1.08997 * 110.51278 * 237.28995 * 16 14 4 31 31 H 1.08996 * 110.51099 * 359.97438 * 16 14 4 32 32 H 1.09004 * 110.37298 * 142.80874 * 17 16 14 33 33 H 1.08994 * 110.37471 * 265.03610 * 17 16 14 34 34 H 1.08999 * 110.37564 * 281.68259 * 19 18 17 35 35 H 1.09003 * 110.37171 * 159.34460 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4696 -0.9154 1.1236 6 6 3.7719 -1.8789 0.0049 7 1 2.9673 -2.2847 -0.5905 8 6 5.0757 -2.2415 -0.2592 9 7 5.3394 -3.0819 -1.2358 10 14 6.4673 -1.5390 0.7701 11 1 6.9539 -0.2799 0.1512 12 1 5.9747 -1.2579 2.1425 13 1 7.5795 -2.5209 0.8347 14 6 1.6638 0.0483 2.4171 15 1 0.6724 0.4903 2.3181 16 6 1.7224 -0.8791 3.6515 17 6 2.8050 -0.2406 4.5497 18 8 2.8403 1.1481 4.1545 19 6 2.7180 1.1374 2.7155 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1050 1.4513 0.2321 25 1 1.8788 1.8849 -0.9831 26 1 1.4997 2.0189 0.7509 27 1 3.8231 -1.3316 2.0670 28 1 3.9735 0.0322 0.9331 29 1 6.2566 -3.3373 -1.4213 30 1 0.7606 -0.8937 4.1642 31 1 2.0149 -1.8873 3.3583 32 1 2.5273 -0.3293 5.6001 33 1 3.7716 -0.7121 4.3725 34 1 3.6716 0.8786 2.2555 35 1 2.3735 2.1073 2.3568 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069622557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:03 Heat of formation + Delta-G solvation = -32.745120 kcal Electronic energy + Delta-G solvation = -15540.501330 eV Core-core repulsion = 13153.049807 eV Total energy + Delta-G solvation = -2387.451523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80964 -36.82642 -32.77076 -31.82678 -30.12464 -28.50630 -27.08073 -26.06592 -22.84459 -21.63502 -20.99012 -18.41296 -16.96724 -16.41864 -15.58881 -15.04183 -14.70383 -14.12861 -13.91504 -13.30311 -13.18087 -12.96191 -12.46172 -11.81336 -11.65770 -11.55734 -11.43525 -11.10148 -10.89458 -10.80047 -10.55932 -10.49169 -10.33627 -9.86855 -9.80880 -9.51996 -9.13588 -8.60937 -7.37013 -6.08836 -4.05879 3.24533 3.33037 3.34638 4.22291 4.38169 4.77651 5.02985 5.11951 5.22420 5.38287 5.43529 5.59789 5.65099 5.69245 5.84317 5.94549 5.99024 6.02263 6.05815 6.16970 6.22879 6.29695 6.41926 6.49621 6.59139 6.76347 6.91155 6.97967 7.09011 7.58494 7.87980 8.04782 8.61941 8.99949 9.52996 11.04204 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025219 B = 0.013316 C = 0.010300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.013395 B = 2102.185444 C = 2717.735648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 C -0.186 4.186 4 N -0.508 5.508 5 C 0.156 3.844 6 C -0.508 4.508 7 H 0.081 0.919 8 C 0.070 3.930 9 N -0.899 5.899 10 Si 0.869 3.131 11 H -0.277 1.277 12 H -0.267 1.267 13 H -0.285 1.285 14 C 0.050 3.950 15 H 0.087 0.913 16 C -0.146 4.146 17 C 0.042 3.958 18 O -0.385 6.385 19 C 0.000 4.000 20 H 0.046 0.954 21 H 0.050 0.950 22 H 0.060 0.940 23 H 0.100 0.900 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.029 0.971 28 H -0.007 1.007 29 H 0.264 0.736 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.727 7.162 6.862 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 C -0.245 4.245 4 N -0.231 5.231 5 C 0.030 3.970 6 C -0.547 4.547 7 H 0.099 0.901 8 C -0.131 4.131 9 N -0.538 5.538 10 Si 0.697 3.303 11 H -0.203 1.203 12 H -0.192 1.192 13 H -0.211 1.211 14 C -0.060 4.060 15 H 0.105 0.895 16 C -0.184 4.184 17 C -0.034 4.034 18 O -0.303 6.303 19 C -0.078 4.078 20 H 0.065 0.935 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.118 0.882 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.011 0.989 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.784 6.776 6.930 11.830 hybrid contribution 1.316 0.935 0.285 1.639 sum -5.468 7.711 7.215 11.892 Atomic orbital electron populations 1.21879 0.95752 1.01879 1.00323 1.21667 0.94057 0.91934 0.95471 1.22690 1.01930 0.98634 1.01224 1.62374 1.16995 1.44288 0.99490 1.20295 0.83334 0.95239 0.98148 1.21021 0.93698 1.25322 1.14611 0.90085 1.24878 0.98444 0.94859 0.94964 1.69885 1.19874 1.33888 1.30117 0.86952 0.82628 0.79204 0.81543 1.20281 1.19167 1.21062 1.23077 0.98519 0.92298 0.92064 0.89545 1.22930 0.98937 1.01285 0.95288 1.23422 0.98668 0.82378 0.98973 1.89028 1.95051 1.24800 1.21438 1.24722 1.01044 1.00462 0.81575 0.93517 0.93053 0.92089 0.88194 0.92045 0.92832 0.93304 0.95338 0.98928 0.92642 0.91186 0.88986 0.89727 0.92440 0.90518 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.13 37.15 0.34 -1.76 16 2 C 0.08 1.40 2.78 -67.71 -0.19 1.21 16 3 C -0.19 -3.02 7.61 37.16 0.28 -2.74 16 4 N -0.51 -10.10 4.32 -218.28 -0.94 -11.04 16 5 C 0.16 3.61 2.32 -4.98 -0.01 3.60 16 6 C -0.51 -13.99 8.93 -34.44 -0.31 -14.30 16 7 H 0.08 2.43 7.42 -52.49 -0.39 2.04 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 10 Si 0.87 21.26 27.47 -169.99 -4.67 16.59 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 14 C 0.05 0.85 2.50 -66.14 -0.17 0.69 16 15 H 0.09 1.35 5.86 -51.93 -0.30 1.04 16 16 C -0.15 -2.31 6.24 -25.16 -0.16 -2.47 16 17 C 0.04 0.66 7.62 37.93 0.29 0.95 16 18 O -0.38 -6.78 11.65 -35.23 -0.41 -7.20 16 19 C 0.00 0.00 5.18 37.94 0.20 0.19 16 20 H 0.05 0.64 6.25 -51.93 -0.32 0.32 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.10 2.10 6.65 -51.93 -0.35 1.76 16 24 H 0.06 1.10 5.45 -51.93 -0.28 0.82 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.71 6.03 -51.93 -0.31 0.39 16 27 H 0.03 0.69 6.33 -51.93 -0.33 0.36 16 28 H -0.01 -0.15 4.01 -51.93 -0.21 -0.36 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.59 7.68 -51.93 -0.40 1.19 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.08 1.49 4.77 -51.93 -0.25 1.24 16 35 H 0.09 1.34 6.39 -51.93 -0.33 1.01 16 LS Contribution 259.87 15.07 3.92 3.92 Total: -1.00 -29.38 259.87 -6.33 -35.71 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.18 Total: 1.08 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 0.18 Total: -12.72 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.17 Total: -37.38 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.41 Total: -7.20 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.38 -6.33 -35.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069622557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.964 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds