Wall clock time and date at job start Mon Mar 30 2020 03:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47202 * 2 1 4 4 N 1.46903 * 109.47200 * 119.99800 * 2 1 3 5 5 C 1.46895 * 111.00022 * 170.30155 * 4 2 1 6 6 C 1.50699 * 109.47475 * 293.95340 * 5 4 2 7 7 H 1.08002 * 120.00069 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00051 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99652 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00047 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47120 * 269.99953 * 10 8 6 12 12 H 1.48504 * 109.46759 * 29.99943 * 10 8 6 13 13 H 1.48500 * 109.47040 * 149.99753 * 10 8 6 14 14 C 1.46897 * 110.99945 * 294.26088 * 4 2 1 15 15 H 1.08999 * 110.45793 * 37.52217 * 14 4 2 16 16 C 1.54509 * 110.51071 * 160.12880 * 14 4 2 17 17 C 1.54478 * 104.06432 * 118.64107 * 16 14 4 18 18 O 1.44431 * 104.80186 * 23.97978 * 17 16 14 19 19 C 1.44421 * 105.27360 * 319.48648 * 18 17 16 20 20 H 1.09004 * 109.47155 * 300.00576 * 1 2 3 21 21 H 1.09003 * 109.46876 * 59.99924 * 1 2 3 22 22 H 1.08993 * 109.47379 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47680 * 239.99960 * 2 1 3 24 24 H 1.09005 * 109.46866 * 166.94513 * 3 2 1 25 25 H 1.09000 * 109.47073 * 286.94027 * 3 2 1 26 26 H 1.08998 * 109.47160 * 46.94615 * 3 2 1 27 27 H 1.09005 * 109.47097 * 173.95740 * 5 4 2 28 28 H 1.09004 * 109.47324 * 53.96016 * 5 4 2 29 29 H 0.97000 * 119.99675 * 180.02562 * 9 8 6 30 30 H 1.08997 * 110.51278 * 237.28995 * 16 14 4 31 31 H 1.08996 * 110.51099 * 359.97438 * 16 14 4 32 32 H 1.09004 * 110.37298 * 142.80874 * 17 16 14 33 33 H 1.08994 * 110.37471 * 265.03610 * 17 16 14 34 34 H 1.08999 * 110.37564 * 281.68259 * 19 18 17 35 35 H 1.09003 * 110.37171 * 159.34460 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4696 -0.9154 1.1236 6 6 3.7719 -1.8789 0.0049 7 1 2.9673 -2.2847 -0.5905 8 6 5.0757 -2.2415 -0.2592 9 7 5.3394 -3.0819 -1.2358 10 14 6.4673 -1.5390 0.7701 11 1 6.9539 -0.2799 0.1512 12 1 5.9747 -1.2579 2.1425 13 1 7.5795 -2.5209 0.8347 14 6 1.6638 0.0483 2.4171 15 1 0.6724 0.4903 2.3181 16 6 1.7224 -0.8791 3.6515 17 6 2.8050 -0.2406 4.5497 18 8 2.8403 1.1481 4.1545 19 6 2.7180 1.1374 2.7155 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1050 1.4513 0.2321 25 1 1.8788 1.8849 -0.9831 26 1 1.4997 2.0189 0.7509 27 1 3.8231 -1.3316 2.0670 28 1 3.9735 0.0322 0.9331 29 1 6.2566 -3.3373 -1.4213 30 1 0.7606 -0.8937 4.1642 31 1 2.0149 -1.8873 3.3583 32 1 2.5273 -0.3293 5.6001 33 1 3.7716 -0.7121 4.3725 34 1 3.6716 0.8786 2.2555 35 1 2.3735 2.1073 2.3568 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069622557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:01 Heat of formation + Delta-G solvation = -53.874073 kcal Electronic energy + Delta-G solvation = -15541.417550 eV Core-core repulsion = 13153.049807 eV Total energy + Delta-G solvation = -2388.367743 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20788 -38.25140 -34.85846 -33.23592 -31.71137 -29.97907 -28.51234 -27.61567 -24.47117 -23.18487 -22.36392 -19.95220 -18.92313 -17.83409 -17.07274 -16.60314 -16.16878 -15.87209 -15.37787 -14.82614 -14.76617 -14.36213 -14.22198 -13.36452 -13.03793 -12.93188 -12.79426 -12.67891 -12.57353 -12.18440 -12.09563 -11.92239 -11.89648 -11.71965 -11.35432 -11.16267 -10.78884 -10.71850 -8.93373 -8.29576 -6.30984 1.29654 1.31868 1.41292 2.30702 2.87654 3.04347 3.38051 3.74266 3.82869 4.05373 4.17241 4.29542 4.31261 4.38113 4.50006 4.62347 4.65646 4.74027 4.79417 4.82903 4.97830 4.99907 5.02259 5.14302 5.17796 5.25455 5.38962 5.50291 5.58171 5.75805 6.03161 6.44610 6.68258 6.76054 7.31961 8.87099 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025219 B = 0.013316 C = 0.010300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.013395 B = 2102.185444 C = 2717.735648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.072 3.928 3 C -0.179 4.179 4 N -0.522 5.522 5 C 0.172 3.828 6 C -0.510 4.510 7 H 0.040 0.960 8 C 0.013 3.987 9 N -0.946 5.946 10 Si 0.935 3.065 11 H -0.268 1.268 12 H -0.253 1.253 13 H -0.281 1.281 14 C 0.049 3.951 15 H 0.110 0.890 16 C -0.145 4.145 17 C 0.040 3.960 18 O -0.392 6.392 19 C 0.003 3.997 20 H 0.067 0.933 21 H 0.071 0.929 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.023 0.977 28 H -0.004 1.004 29 H 0.266 0.734 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 9.016 8.731 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.037 4.037 3 C -0.237 4.237 4 N -0.245 5.245 5 C 0.045 3.955 6 C -0.548 4.548 7 H 0.058 0.942 8 C -0.185 4.185 9 N -0.587 5.587 10 Si 0.759 3.241 11 H -0.193 1.193 12 H -0.177 1.177 13 H -0.206 1.206 14 C -0.060 4.060 15 H 0.128 0.872 16 C -0.183 4.183 17 C -0.036 4.036 18 O -0.311 6.311 19 C -0.075 4.075 20 H 0.086 0.914 21 H 0.089 0.911 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.041 0.959 28 H 0.013 0.987 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.661 8.641 8.809 14.524 hybrid contribution 1.489 0.322 -0.339 1.561 sum -6.171 8.963 8.470 13.790 Atomic orbital electron populations 1.21793 0.92843 1.01865 1.02323 1.21676 0.96323 0.92488 0.93166 1.22599 1.00734 0.97502 1.02893 1.62274 1.14603 1.46197 1.01454 1.19956 0.85938 0.93921 0.95685 1.21272 0.92718 1.25628 1.15198 0.94208 1.25728 1.01289 0.95271 0.96194 1.70034 1.20616 1.35835 1.32226 0.85897 0.79151 0.78650 0.80404 1.19338 1.17681 1.20623 1.23219 0.99451 0.92385 0.90925 0.87185 1.22955 1.00491 0.99814 0.95043 1.23556 0.97941 0.81387 1.00766 1.89026 1.95028 1.25777 1.21279 1.24648 0.99807 1.01416 0.81614 0.91419 0.91053 0.93169 0.92469 0.94122 0.91475 0.90770 0.95935 0.98653 0.92504 0.88269 0.91016 0.86523 0.93998 0.93034 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.13 71.98 0.66 -2.96 16 2 C 0.07 2.57 2.78 44.91 0.12 2.69 16 3 C -0.18 -5.47 7.61 71.98 0.55 -4.92 16 4 N -0.52 -20.45 4.32 -844.51 -3.65 -24.09 16 5 C 0.17 8.02 2.32 85.56 0.20 8.22 16 6 C -0.51 -29.09 8.93 25.60 0.23 -28.86 16 7 H 0.04 2.54 7.42 -2.91 -0.02 2.51 16 8 C 0.01 0.73 5.47 84.66 0.46 1.19 16 9 N -0.95 -59.00 13.96 21.45 0.30 -58.71 16 10 Si 0.93 44.28 27.47 68.60 1.88 46.16 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 C 0.05 1.55 2.50 45.93 0.11 1.67 16 15 H 0.11 2.96 5.86 -2.39 -0.01 2.95 16 16 C -0.14 -4.21 6.24 31.61 0.20 -4.01 16 17 C 0.04 1.14 7.62 72.48 0.55 1.70 16 18 O -0.39 -12.66 11.65 -148.98 -1.74 -14.40 16 19 C 0.00 0.09 5.18 72.49 0.38 0.47 16 20 H 0.07 1.59 6.25 -2.38 -0.01 1.58 16 21 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.06 2.51 6.65 -2.39 -0.02 2.50 16 24 H 0.04 1.41 5.45 -2.38 -0.01 1.39 16 25 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.07 1.88 6.03 -2.39 -0.01 1.86 16 27 H 0.02 1.08 6.33 -2.38 -0.02 1.07 16 28 H 0.00 -0.18 4.01 -2.39 -0.01 -0.19 16 29 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 2.39 7.68 -2.39 -0.02 2.37 16 32 H 0.12 2.57 8.14 -2.38 -0.02 2.55 16 33 H 0.04 1.32 8.10 -2.39 -0.02 1.30 16 34 H 0.05 1.93 4.77 -2.39 -0.01 1.92 16 35 H 0.11 2.92 6.39 -2.39 -0.02 2.91 16 Total: -1.00 -64.95 259.87 1.28 -63.68 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 1.01 Total: 12.17 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: 3.46 Total: -24.82 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -3.35 Total: -82.80 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -1.74 Total: -14.40 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -64.95 1.28 -63.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069622557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.803 kcal (2) G-P(sol) polarization free energy of solvation -64.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds