Wall clock time and date at job start Mon Mar 30 2020 03:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47321 * 2 1 4 4 N 1.46499 * 109.47024 * 120.00102 * 2 1 3 5 5 C 1.36940 * 119.99928 * 300.59097 * 4 2 1 6 6 H 1.08002 * 119.99697 * 38.75640 * 5 4 2 7 7 C 1.38810 * 119.99820 * 218.74889 * 5 4 2 8 8 N 1.31621 * 120.00009 * 20.58277 * 7 5 4 9 9 Si 1.86802 * 119.99939 * 200.30172 * 7 5 4 10 10 H 1.48499 * 109.47258 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47196 * 120.00354 * 9 7 5 12 12 H 1.48507 * 109.47077 * 240.00444 * 9 7 5 13 13 C 1.46504 * 119.99895 * 120.59130 * 4 2 1 14 14 C 1.52995 * 109.47223 * 269.99873 * 13 4 2 15 15 H 1.09005 * 110.33339 * 307.25337 * 14 13 4 16 16 C 1.54480 * 110.37249 * 184.99882 * 14 13 4 17 17 C 1.54504 * 104.06287 * 217.19002 * 16 14 13 18 18 C 1.54476 * 104.06563 * 0.02562 * 17 16 14 19 19 O 1.44424 * 110.37297 * 69.61929 * 14 13 4 20 20 H 1.09006 * 109.46995 * 307.74014 * 1 2 3 21 21 H 1.09008 * 109.46958 * 67.73609 * 1 2 3 22 22 H 1.08996 * 109.47220 * 187.73973 * 1 2 3 23 23 H 1.08998 * 109.47299 * 240.00066 * 2 1 3 24 24 H 1.08996 * 109.46914 * 176.03684 * 3 2 1 25 25 H 1.08995 * 109.46659 * 296.03888 * 3 2 1 26 26 H 1.09002 * 109.46473 * 56.04098 * 3 2 1 27 27 H 0.97000 * 119.99883 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.46846 * 30.00109 * 13 4 2 29 29 H 1.09004 * 109.46753 * 150.00196 * 13 4 2 30 30 H 1.09001 * 110.51310 * 335.83758 * 16 14 13 31 31 H 1.09003 * 110.50923 * 98.40932 * 16 14 13 32 32 H 1.08999 * 110.51180 * 118.64927 * 17 16 14 33 33 H 1.08998 * 110.51317 * 241.22013 * 17 16 14 34 34 H 1.09005 * 110.37453 * 142.80569 * 18 17 16 35 35 H 1.08997 * 110.37800 * 265.14694 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6775 -0.2299 2.4399 6 1 0.6824 0.1485 2.6215 7 6 2.6110 -0.2493 3.4670 8 7 3.8956 -0.3138 3.1877 9 14 2.0445 -0.1759 5.2455 10 1 0.5620 -0.1027 5.2902 11 1 2.5012 -1.3942 5.9612 12 1 2.6198 1.0272 5.8991 13 6 2.8712 -1.8742 1.0617 14 6 1.9975 -3.1289 1.0063 15 1 1.3138 -3.1521 1.8551 16 6 2.8787 -4.3976 0.9906 17 6 2.1332 -5.3607 0.0399 18 6 0.8901 -4.5597 -0.4069 19 8 1.2621 -3.1750 -0.2358 20 1 -0.3633 0.6291 0.8127 21 1 -0.3633 0.3894 -0.9511 22 1 -0.3633 -1.0183 0.1384 23 1 1.8934 -0.5138 -0.8900 24 1 3.1277 1.4433 0.0710 25 1 1.7359 1.9354 -0.9233 26 1 1.6199 1.9764 0.8524 27 1 4.5480 -0.3270 3.9054 28 1 3.4563 -1.7981 0.1453 29 1 3.5432 -1.9369 1.9178 30 1 3.8708 -4.1687 0.6016 31 1 2.9509 -4.8248 1.9908 32 1 2.7568 -5.6080 -0.8192 33 1 1.8370 -6.2665 0.5689 34 1 0.6620 -4.7653 -1.4528 35 1 0.0351 -4.8030 0.2238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070715068.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:05 Heat of formation + Delta-G solvation = -55.117697 kcal Electronic energy + Delta-G solvation = -15360.158097 eV Core-core repulsion = 12971.736427 eV Total energy + Delta-G solvation = -2388.421670 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.19789 -37.94480 -34.28128 -32.94726 -32.34846 -29.92335 -27.73149 -26.90641 -24.83491 -22.56129 -21.67572 -21.29418 -18.28451 -17.20301 -16.81595 -16.29662 -16.17174 -15.81048 -15.31893 -14.51421 -14.36577 -14.08723 -13.36295 -13.19775 -12.99219 -12.86693 -12.66188 -12.58941 -12.47358 -12.23061 -12.11072 -11.80152 -11.70083 -11.55771 -11.39352 -11.15057 -10.51791 -10.49295 -8.45994 -7.76633 -5.38691 1.43970 1.47899 1.57467 2.53251 3.21751 3.27714 3.66782 3.87324 4.05557 4.16125 4.38984 4.40506 4.52653 4.66439 4.70791 4.81576 4.88370 4.92686 4.96080 4.98634 5.11856 5.16775 5.21200 5.24623 5.26620 5.37001 5.61655 5.63352 5.72178 5.83587 6.19867 6.54928 7.23981 7.93920 8.50309 9.19645 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024762 B = 0.012558 C = 0.009753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.476845 B = 2229.171974 C = 2870.132750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.162 3.838 3 C -0.137 4.137 4 N -0.592 5.592 5 C -0.247 4.247 6 H 0.050 0.950 7 C -0.037 4.037 8 N -0.919 5.919 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.292 1.292 13 C 0.160 3.840 14 C 0.066 3.934 15 H 0.038 0.962 16 C -0.148 4.148 17 C -0.142 4.142 18 C 0.034 3.966 19 O -0.387 6.387 20 H 0.035 0.965 21 H 0.063 0.937 22 H 0.040 0.960 23 H 0.050 0.950 24 H 0.025 0.975 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.250 0.750 28 H 0.024 0.976 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.885 -7.752 -6.051 10.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.056 3.944 3 C -0.196 4.196 4 N -0.312 5.312 5 C -0.378 4.378 6 H 0.068 0.932 7 C -0.233 4.233 8 N -0.564 5.564 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.220 1.220 13 C 0.034 3.966 14 C 0.006 3.994 15 H 0.056 0.944 16 C -0.187 4.187 17 C -0.180 4.180 18 C -0.043 4.043 19 O -0.307 6.307 20 H 0.054 0.946 21 H 0.081 0.919 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.803 -7.543 -6.104 10.422 hybrid contribution 0.065 0.039 1.350 1.352 sum -3.738 -7.503 -4.755 9.637 Atomic orbital electron populations 1.21933 0.96907 1.00354 1.00147 1.20509 0.93405 0.91586 0.88894 1.22001 0.99366 0.98177 1.00049 1.44020 1.58291 1.27553 1.01357 1.19097 0.94136 1.37164 0.87404 0.93212 1.25792 0.94919 1.00865 1.01763 1.70113 1.00422 1.54149 1.31714 0.85495 0.78133 0.76905 0.81659 1.19614 1.21404 1.21954 1.20894 0.91976 0.84261 0.99493 1.23660 0.92929 0.96902 0.85906 0.94380 1.22920 0.99827 0.95222 1.00696 1.22883 0.96847 0.98578 0.99698 1.23553 0.96777 0.81706 1.02235 1.89139 1.74261 1.26545 1.40720 0.94584 0.91854 0.94106 0.93175 0.95609 0.91739 0.94541 0.94053 0.95802 0.90557 0.91203 0.90743 0.89785 0.89053 0.87887 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 9.00 71.98 0.65 -4.69 16 2 C 0.16 7.21 3.23 44.99 0.15 7.35 16 3 C -0.14 -5.84 9.10 71.98 0.66 -5.18 16 4 N -0.59 -30.12 2.36 -678.03 -1.60 -31.72 16 5 C -0.25 -13.60 8.28 84.03 0.70 -12.90 16 6 H 0.05 2.79 7.04 -2.91 -0.02 2.77 16 7 C -0.04 -2.03 4.96 84.86 0.42 -1.61 16 8 N -0.92 -53.46 11.50 21.65 0.25 -53.21 16 9 Si 0.95 44.78 29.60 68.60 2.03 46.81 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 13 C 0.16 7.75 4.86 86.38 0.42 8.17 16 14 C 0.07 2.70 3.53 31.10 0.11 2.81 16 15 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 16 C -0.15 -4.77 6.63 31.61 0.21 -4.56 16 17 C -0.14 -3.53 7.09 31.61 0.22 -3.30 16 18 C 0.03 0.95 7.63 72.48 0.55 1.51 16 19 O -0.39 -14.98 11.22 -148.98 -1.67 -16.65 16 20 H 0.04 1.47 7.34 -2.38 -0.02 1.46 16 21 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 22 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 2.19 7.80 -2.39 -0.02 2.17 16 24 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.04 1.64 7.80 -2.39 -0.02 1.62 16 27 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.02 1.14 7.92 -2.39 -0.02 1.12 16 29 H 0.08 4.13 5.57 -2.38 -0.01 4.12 16 30 H 0.07 2.25 7.87 -2.39 -0.02 2.23 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -61.58 281.39 4.12 -57.46 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.03 Total: 9.72 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 4.08 Total: -12.42 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -1.35 Total: -84.92 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -1.67 Total: -16.65 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -61.58 4.12 -57.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715068.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.344 kcal (2) G-P(sol) polarization free energy of solvation -61.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds