Wall clock time and date at job start Mon Mar 30 2020 03:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47279 * 2 1 4 4 N 1.46495 * 109.47579 * 120.00680 * 2 1 3 5 5 C 1.36939 * 119.99615 * 296.20393 * 4 2 1 6 6 H 1.08001 * 120.00022 * 321.13310 * 5 4 2 7 7 C 1.38817 * 120.00030 * 141.13997 * 5 4 2 8 8 N 1.31615 * 119.99980 * 339.57916 * 7 5 4 9 9 Si 1.86800 * 119.99889 * 159.57497 * 7 5 4 10 10 H 1.48500 * 109.47209 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46798 * 120.00010 * 9 7 5 12 12 H 1.48501 * 109.47322 * 239.99914 * 9 7 5 13 13 C 1.46500 * 120.00115 * 116.19945 * 4 2 1 14 14 C 1.53002 * 109.46945 * 90.00509 * 13 4 2 15 15 H 1.08994 * 110.27596 * 59.29644 * 14 13 4 16 16 C 1.54950 * 110.39039 * 181.44348 * 14 13 4 17 17 C 1.55309 * 100.93736 * 155.39991 * 16 14 13 18 18 C 1.54373 * 102.25538 * 325.86561 * 17 16 14 19 19 O 1.43244 * 107.59061 * 21.35620 * 18 17 16 20 20 H 1.09006 * 109.46681 * 305.16837 * 1 2 3 21 21 H 1.08998 * 109.47160 * 65.16487 * 1 2 3 22 22 H 1.08997 * 109.47295 * 185.17064 * 1 2 3 23 23 H 1.09002 * 109.46702 * 240.00449 * 2 1 3 24 24 H 1.08997 * 109.47693 * 174.88388 * 3 2 1 25 25 H 1.08998 * 109.47426 * 294.88565 * 3 2 1 26 26 H 1.09008 * 109.47283 * 54.88652 * 3 2 1 27 27 H 0.96996 * 119.99750 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47357 * 329.99764 * 13 4 2 29 29 H 1.09007 * 109.46765 * 209.99827 * 13 4 2 30 30 H 1.08997 * 111.12895 * 273.31795 * 16 14 13 31 31 H 1.09004 * 111.12633 * 37.48543 * 16 14 13 32 32 H 1.09005 * 110.84182 * 207.67634 * 17 16 14 33 33 H 1.08999 * 111.02136 * 84.13864 * 17 16 14 34 34 H 1.08999 * 109.83409 * 261.84622 * 18 17 16 35 35 H 1.09000 * 109.90851 * 140.90986 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.7529 -0.1793 2.4383 6 1 1.7829 0.8880 2.6006 7 6 1.4455 -1.0328 3.4890 8 7 1.0163 -2.2523 3.2423 9 14 1.6410 -0.4505 5.2531 10 1 2.1349 0.9499 5.2603 11 1 0.3282 -0.5155 5.9441 12 1 2.6147 -1.3230 5.9574 13 6 2.7907 -1.9285 1.0630 14 6 4.2798 -1.5920 0.9617 15 1 4.6060 -1.0504 1.8495 16 6 5.1146 -2.8852 0.7837 17 6 6.3808 -2.3243 0.0807 18 6 5.7981 -1.1868 -0.7851 19 8 4.5360 -0.8147 -0.2188 20 1 -0.3633 0.5920 0.8401 21 1 -0.3633 0.4316 -0.9326 22 1 -0.3634 -1.0234 0.0926 23 1 1.8932 -0.5138 -0.8901 24 1 3.1261 1.4439 0.0916 25 1 1.7534 1.9292 -0.9322 26 1 1.6038 1.9821 0.8407 27 1 0.8011 -2.8486 3.9765 28 1 2.4759 -2.4584 0.1641 29 1 2.6193 -2.5591 1.9355 30 1 5.3642 -3.3276 1.7481 31 1 4.5969 -3.6025 0.1467 32 1 6.8478 -3.0864 -0.5431 33 1 7.0911 -1.9326 0.8089 34 1 5.6558 -1.5363 -1.8077 35 1 6.4734 -0.3313 -0.7775 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070715069.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:10 Heat of formation + Delta-G solvation = -37.812176 kcal Electronic energy + Delta-G solvation = -15374.477712 eV Core-core repulsion = 12986.806465 eV Total energy + Delta-G solvation = -2387.671247 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.74913 -36.08905 -32.32310 -31.53955 -30.67589 -28.22896 -26.00577 -25.07931 -23.03436 -21.13085 -20.21568 -19.37604 -16.30714 -16.03014 -15.24102 -14.76121 -14.12738 -14.06769 -13.41817 -12.85079 -12.56974 -12.52575 -11.99418 -11.34466 -11.23140 -11.19223 -11.09161 -10.92083 -10.83892 -10.66775 -10.36752 -10.26763 -10.01749 -9.81111 -9.69919 -9.29351 -8.77085 -8.40200 -6.40295 -5.69183 -3.26344 3.38191 3.47366 3.50772 4.50600 4.56332 4.97710 5.16027 5.34270 5.47374 5.53178 5.79459 5.83306 6.04229 6.08572 6.20111 6.26007 6.30180 6.41517 6.55383 6.57379 6.61939 6.74301 6.88609 6.98346 7.04245 7.17560 7.40893 7.48077 7.60695 7.90661 7.94251 8.64658 9.31189 9.94329 10.56023 11.30618 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024988 B = 0.012549 C = 0.009783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.259264 B = 2230.675205 C = 2861.469889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.172 3.828 3 C -0.148 4.148 4 N -0.575 5.575 5 C -0.243 4.243 6 H 0.059 0.941 7 C 0.007 3.993 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.290 1.290 13 C 0.154 3.846 14 C 0.063 3.937 15 H 0.063 0.937 16 C -0.151 4.151 17 C -0.156 4.156 18 C 0.050 3.950 19 O -0.369 6.369 20 H 0.051 0.949 21 H 0.027 0.973 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.030 0.970 26 H 0.046 0.954 27 H 0.252 0.748 28 H 0.027 0.973 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.127 -0.173 -5.826 9.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.065 3.935 3 C -0.207 4.207 4 N -0.295 5.295 5 C -0.374 4.374 6 H 0.077 0.923 7 C -0.192 4.192 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.216 1.216 13 C 0.027 3.973 14 C 0.004 3.996 15 H 0.081 0.919 16 C -0.189 4.189 17 C -0.193 4.193 18 C -0.028 4.028 19 O -0.289 6.289 20 H 0.070 0.930 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.910 -0.133 -5.799 9.022 hybrid contribution 0.368 0.033 1.115 1.174 sum 7.278 -0.100 -4.685 8.656 Atomic orbital electron populations 1.22154 0.98704 1.01163 0.98804 1.20308 0.91388 0.92015 0.89808 1.22068 1.01199 0.98444 0.98943 1.43732 1.58551 1.26020 1.01174 1.19030 1.40805 0.91898 0.85621 0.92312 1.25187 0.98533 0.96992 0.98483 1.69988 1.45445 1.07720 1.30412 0.86405 0.77386 0.78427 0.85692 1.20162 1.21791 1.21626 1.21096 0.85072 0.90007 1.01092 1.24042 0.99788 0.88532 0.87262 0.91890 1.23275 0.95466 0.99281 1.00880 1.23083 0.98465 0.98377 0.99406 1.22982 0.86990 0.96064 0.96738 1.88513 1.35220 1.62543 1.42611 0.92958 0.95424 0.93359 0.93385 0.92876 0.95047 0.93451 0.93820 0.95452 0.87952 0.90653 0.90871 0.91080 0.91254 0.92561 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.14 37.16 0.34 -2.89 16 2 C 0.17 3.86 2.94 -67.94 -0.20 3.66 16 3 C -0.15 -3.05 8.97 37.15 0.33 -2.72 16 4 N -0.58 -14.47 2.31 -165.66 -0.38 -14.85 16 5 C -0.24 -6.62 8.39 -15.06 -0.13 -6.75 16 6 H 0.06 1.63 6.87 -52.49 -0.36 1.27 16 7 C 0.01 0.20 4.97 -17.43 -0.09 0.11 16 8 N -0.89 -25.44 11.50 55.49 0.64 -24.80 16 9 Si 0.89 21.62 29.60 -169.99 -5.03 16.59 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.15 3.64 5.00 -4.04 -0.02 3.62 16 14 C 0.06 1.29 3.70 -25.70 -0.10 1.20 16 15 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 16 C -0.15 -2.45 6.57 -24.48 -0.16 -2.61 16 17 C -0.16 -2.14 7.02 -24.79 -0.17 -2.31 16 18 C 0.05 0.76 7.79 37.88 0.30 1.06 16 19 O -0.37 -7.39 10.41 -35.23 -0.37 -7.76 16 20 H 0.05 1.19 7.90 -51.93 -0.41 0.78 16 21 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.05 1.07 7.83 -51.93 -0.41 0.66 16 24 H 0.05 1.14 7.98 -51.93 -0.41 0.72 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 1.01 7.15 -51.92 -0.37 0.64 16 27 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.03 0.63 7.95 -51.93 -0.41 0.22 16 29 H 0.10 2.68 5.57 -51.93 -0.29 2.39 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 280.52 15.07 4.23 4.23 Total: -1.00 -28.75 280.52 -6.83 -35.58 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.02 Total: -1.36 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 0.11 Total: -7.63 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.26 Total: -39.65 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.37 Total: -7.76 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.75 -6.83 -35.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715069.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.232 kcal (2) G-P(sol) polarization free energy of solvation -28.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds