Wall clock time and date at job start Mon Mar 30 2020 03:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47279 * 2 1 4 4 N 1.46495 * 109.47579 * 120.00680 * 2 1 3 5 5 C 1.36939 * 119.99615 * 296.20393 * 4 2 1 6 6 H 1.08001 * 120.00022 * 321.13310 * 5 4 2 7 7 C 1.38817 * 120.00030 * 141.13997 * 5 4 2 8 8 N 1.31615 * 119.99980 * 339.57916 * 7 5 4 9 9 Si 1.86800 * 119.99889 * 159.57497 * 7 5 4 10 10 H 1.48500 * 109.47209 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46798 * 120.00010 * 9 7 5 12 12 H 1.48501 * 109.47322 * 239.99914 * 9 7 5 13 13 C 1.46500 * 120.00115 * 116.19945 * 4 2 1 14 14 C 1.53002 * 109.46945 * 90.00509 * 13 4 2 15 15 H 1.08994 * 110.27596 * 59.29644 * 14 13 4 16 16 C 1.54950 * 110.39039 * 181.44348 * 14 13 4 17 17 C 1.55309 * 100.93736 * 155.39991 * 16 14 13 18 18 C 1.54373 * 102.25538 * 325.86561 * 17 16 14 19 19 O 1.43244 * 107.59061 * 21.35620 * 18 17 16 20 20 H 1.09006 * 109.46681 * 305.16837 * 1 2 3 21 21 H 1.08998 * 109.47160 * 65.16487 * 1 2 3 22 22 H 1.08997 * 109.47295 * 185.17064 * 1 2 3 23 23 H 1.09002 * 109.46702 * 240.00449 * 2 1 3 24 24 H 1.08997 * 109.47693 * 174.88388 * 3 2 1 25 25 H 1.08998 * 109.47426 * 294.88565 * 3 2 1 26 26 H 1.09008 * 109.47283 * 54.88652 * 3 2 1 27 27 H 0.96996 * 119.99750 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47357 * 329.99764 * 13 4 2 29 29 H 1.09007 * 109.46765 * 209.99827 * 13 4 2 30 30 H 1.08997 * 111.12895 * 273.31795 * 16 14 13 31 31 H 1.09004 * 111.12633 * 37.48543 * 16 14 13 32 32 H 1.09005 * 110.84182 * 207.67634 * 17 16 14 33 33 H 1.08999 * 111.02136 * 84.13864 * 17 16 14 34 34 H 1.08999 * 109.83409 * 261.84622 * 18 17 16 35 35 H 1.09000 * 109.90851 * 140.90986 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.7529 -0.1793 2.4383 6 1 1.7829 0.8880 2.6006 7 6 1.4455 -1.0328 3.4890 8 7 1.0163 -2.2523 3.2423 9 14 1.6410 -0.4505 5.2531 10 1 2.1349 0.9499 5.2603 11 1 0.3282 -0.5155 5.9441 12 1 2.6147 -1.3230 5.9574 13 6 2.7907 -1.9285 1.0630 14 6 4.2798 -1.5920 0.9617 15 1 4.6060 -1.0504 1.8495 16 6 5.1146 -2.8852 0.7837 17 6 6.3808 -2.3243 0.0807 18 6 5.7981 -1.1868 -0.7851 19 8 4.5360 -0.8147 -0.2188 20 1 -0.3633 0.5920 0.8401 21 1 -0.3633 0.4316 -0.9326 22 1 -0.3634 -1.0234 0.0926 23 1 1.8932 -0.5138 -0.8901 24 1 3.1261 1.4439 0.0916 25 1 1.7534 1.9292 -0.9322 26 1 1.6038 1.9821 0.8407 27 1 0.8011 -2.8486 3.9765 28 1 2.4759 -2.4584 0.1641 29 1 2.6193 -2.5591 1.9355 30 1 5.3642 -3.3276 1.7481 31 1 4.5969 -3.6025 0.1467 32 1 6.8478 -3.0864 -0.5431 33 1 7.0911 -1.9326 0.8089 34 1 5.6558 -1.5363 -1.8077 35 1 6.4734 -0.3313 -0.7775 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070715069.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:10 Heat of formation + Delta-G solvation = -54.530455 kcal Electronic energy + Delta-G solvation = -15375.202671 eV Core-core repulsion = 12986.806465 eV Total energy + Delta-G solvation = -2388.396206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.20912 -37.92628 -34.26871 -32.96826 -32.37064 -29.94582 -27.74225 -26.90885 -24.79230 -22.36007 -21.82814 -21.28435 -18.16983 -17.59062 -16.77579 -16.52800 -15.96523 -15.66773 -15.17817 -14.41704 -14.25643 -14.08236 -13.57371 -13.16889 -13.02555 -12.92855 -12.67096 -12.54228 -12.46997 -12.26824 -12.10818 -11.75129 -11.71476 -11.58728 -11.52519 -11.12509 -10.48933 -10.25176 -8.43328 -7.75067 -5.37073 1.43982 1.47854 1.57550 2.53859 3.13387 3.28390 3.69959 3.75538 4.07917 4.16992 4.38256 4.41067 4.51162 4.67330 4.74816 4.82791 4.88381 4.92731 4.96179 4.98704 5.10714 5.15416 5.22254 5.24792 5.26356 5.46829 5.61141 5.64165 5.73556 5.85036 6.41868 6.56162 7.25564 7.95992 8.51999 9.20591 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024988 B = 0.012549 C = 0.009783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.259264 B = 2230.675205 C = 2861.469889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.165 3.835 3 C -0.134 4.134 4 N -0.590 5.590 5 C -0.246 4.246 6 H 0.049 0.951 7 C -0.037 4.037 8 N -0.919 5.919 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.288 1.288 13 C 0.157 3.843 14 C 0.070 3.930 15 H 0.036 0.964 16 C -0.147 4.147 17 C -0.143 4.143 18 C 0.039 3.961 19 O -0.394 6.394 20 H 0.034 0.966 21 H 0.063 0.937 22 H 0.025 0.975 23 H 0.051 0.949 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.034 0.966 27 H 0.250 0.750 28 H 0.023 0.977 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.390 0.119 -6.709 10.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.058 3.942 3 C -0.193 4.193 4 N -0.310 5.310 5 C -0.377 4.377 6 H 0.067 0.933 7 C -0.234 4.234 8 N -0.564 5.564 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.220 1.220 12 H -0.214 1.214 13 C 0.030 3.970 14 C 0.011 3.989 15 H 0.054 0.946 16 C -0.185 4.185 17 C -0.180 4.180 18 C -0.038 4.038 19 O -0.314 6.314 20 H 0.053 0.947 21 H 0.082 0.918 22 H 0.044 0.956 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.190 0.169 -6.701 10.583 hybrid contribution -0.023 -0.035 1.288 1.289 sum 8.167 0.134 -5.413 9.799 Atomic orbital electron populations 1.22036 0.98124 0.99658 0.99939 1.20477 0.91846 0.92896 0.88940 1.21905 1.00166 0.97154 1.00053 1.43960 1.59304 1.26398 1.01385 1.19110 1.40173 0.91567 0.86856 0.93298 1.25784 0.98793 0.97226 1.01595 1.70106 1.46622 1.08613 1.31095 0.85500 0.76996 0.78079 0.81648 1.19696 1.21961 1.21409 1.20973 0.87277 0.89254 0.99503 1.23632 0.97959 0.90436 0.86872 0.94553 1.23227 0.96160 0.97315 1.01805 1.23057 0.97212 0.98312 0.99416 1.23275 0.85508 0.97405 0.97570 1.88461 1.37771 1.62936 1.42196 0.94705 0.91792 0.95604 0.93055 0.94020 0.91892 0.94684 0.94088 0.95817 0.90739 0.90064 0.90413 0.87958 0.90349 0.90887 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 9.14 71.98 0.66 -5.27 16 2 C 0.16 7.33 2.94 44.99 0.13 7.46 16 3 C -0.13 -5.38 8.97 71.98 0.65 -4.74 16 4 N -0.59 -30.10 2.31 -678.04 -1.57 -31.67 16 5 C -0.25 -13.63 8.39 84.03 0.70 -12.92 16 6 H 0.05 2.77 6.87 -2.91 -0.02 2.75 16 7 C -0.04 -2.08 4.97 84.86 0.42 -1.66 16 8 N -0.92 -53.58 11.50 21.65 0.25 -53.33 16 9 Si 0.95 45.03 29.60 68.60 2.03 47.06 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 13 C 0.16 7.53 5.00 86.38 0.43 7.96 16 14 C 0.07 2.87 3.70 31.26 0.12 2.99 16 15 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 16 C -0.15 -4.56 6.57 32.05 0.21 -4.34 16 17 C -0.14 -3.46 7.02 31.85 0.22 -3.23 16 18 C 0.04 1.09 7.79 72.45 0.56 1.66 16 19 O -0.39 -15.33 10.41 -148.98 -1.55 -16.88 16 20 H 0.03 1.57 7.90 -2.38 -0.02 1.55 16 21 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.05 2.24 7.83 -2.39 -0.02 2.22 16 24 H 0.04 1.74 7.98 -2.39 -0.02 1.73 16 25 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.03 1.46 7.15 -2.38 -0.02 1.44 16 27 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 28 H 0.02 1.12 7.95 -2.39 -0.02 1.10 16 29 H 0.07 4.02 5.57 -2.38 -0.01 4.01 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.08 2.34 8.06 -2.38 -0.02 2.32 16 32 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -62.03 280.52 4.30 -57.73 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.03 Total: 9.18 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 4.11 Total: -12.09 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -1.32 Total: -84.99 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -1.55 Total: -16.88 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -62.03 4.30 -57.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715069.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.198 kcal (2) G-P(sol) polarization free energy of solvation -62.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds