Wall clock time and date at job start Mon Mar 30 2020 03:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47366 * 2 1 4 4 N 1.46500 * 109.46970 * 119.99804 * 2 1 3 5 5 C 1.36933 * 120.00075 * 303.82749 * 4 2 1 6 6 H 1.08002 * 120.00005 * 36.04168 * 5 4 2 7 7 C 1.38813 * 119.99919 * 216.03536 * 5 4 2 8 8 N 1.31625 * 119.99968 * 211.06165 * 7 5 4 9 9 Si 1.86794 * 120.00077 * 31.06305 * 7 5 4 10 10 H 1.48500 * 109.47104 * 94.93813 * 9 7 5 11 11 H 1.48494 * 109.47578 * 214.93656 * 9 7 5 12 12 H 1.48505 * 109.47155 * 334.94078 * 9 7 5 13 13 C 1.46501 * 119.99679 * 123.82561 * 4 2 1 14 14 C 1.53005 * 109.47097 * 272.60168 * 13 4 2 15 15 H 1.08998 * 110.83287 * 303.25952 * 14 13 4 16 16 C 1.54814 * 110.90597 * 179.60856 * 14 13 4 17 17 C 1.54105 * 104.18689 * 220.92308 * 16 14 13 18 18 O 1.43745 * 107.29408 * 357.97187 * 17 16 14 19 19 C 1.44376 * 106.97331 * 26.51189 * 18 17 16 20 20 H 1.09000 * 109.46872 * 307.25027 * 1 2 3 21 21 H 1.09006 * 109.47005 * 67.23920 * 1 2 3 22 22 H 1.08995 * 109.47383 * 187.23991 * 1 2 3 23 23 H 1.08999 * 109.47063 * 240.00139 * 2 1 3 24 24 H 1.08997 * 109.47203 * 184.42063 * 3 2 1 25 25 H 1.09004 * 109.46730 * 304.42057 * 3 2 1 26 26 H 1.09001 * 109.46714 * 64.41953 * 3 2 1 27 27 H 0.96998 * 119.99569 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.47020 * 152.60460 * 13 4 2 29 29 H 1.08995 * 109.47590 * 32.60229 * 13 4 2 30 30 H 1.08994 * 110.48787 * 339.60070 * 16 14 13 31 31 H 1.09005 * 110.48230 * 102.25103 * 16 14 13 32 32 H 1.08999 * 109.87448 * 117.39710 * 17 16 14 33 33 H 1.09001 * 109.87765 * 238.39846 * 17 16 14 34 34 H 1.09005 * 110.61859 * 201.43141 * 19 18 17 35 35 H 1.09009 * 110.61762 * 78.44170 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6241 -0.2702 2.4383 6 1 0.6208 0.0998 2.5900 7 6 2.5139 -0.3197 3.5026 8 7 2.0680 -0.5217 4.7244 9 14 4.3442 -0.0996 3.2008 10 1 4.7140 1.3223 3.4167 11 1 5.1078 -0.9579 4.1417 12 1 4.6658 -0.4881 1.8040 13 6 2.9283 -1.8310 1.0634 14 6 2.1147 -3.1160 0.8965 15 1 1.4275 -3.2509 1.7317 16 6 3.0458 -4.3433 0.7431 17 6 2.3744 -5.1919 -0.3542 18 8 1.1609 -4.5201 -0.7313 19 6 1.3521 -3.1164 -0.4529 20 1 -0.3633 0.6220 0.8180 21 1 -0.3633 0.3976 -0.9477 22 1 -0.3634 -1.0194 0.1295 23 1 1.8933 -0.5138 -0.8900 24 1 3.1272 1.4435 -0.0792 25 1 1.6135 1.9787 -0.8478 26 1 1.7428 1.9329 0.9270 27 1 2.6899 -0.5567 5.4680 28 1 3.5484 -1.9070 1.9567 29 1 3.5650 -1.6881 0.1903 30 1 4.0410 -4.0301 0.4279 31 1 3.0985 -4.9012 1.6781 32 1 3.0363 -5.2735 -1.2164 33 1 2.1461 -6.1849 0.0330 34 1 0.3917 -2.6109 -0.3512 35 1 1.9524 -2.6486 -1.2333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070715099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:35 Heat of formation + Delta-G solvation = -30.027338 kcal Electronic energy + Delta-G solvation = -15429.164109 eV Core-core repulsion = 13041.830438 eV Total energy + Delta-G solvation = -2387.333671 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.07919 -36.64965 -32.83852 -32.10609 -30.07470 -28.67230 -26.38205 -25.04855 -23.50498 -21.91474 -20.07283 -19.43801 -16.70155 -15.99115 -15.31730 -14.88504 -14.72668 -14.63761 -13.39524 -13.20749 -12.88228 -12.70970 -12.35691 -12.04074 -11.66470 -11.37038 -11.27058 -11.01015 -10.79763 -10.72664 -10.49008 -10.30268 -10.11107 -9.92885 -9.66214 -9.43036 -9.17212 -8.43741 -6.81154 -6.03569 -3.33235 3.34861 3.47923 3.51916 4.34348 4.54818 4.82487 5.15591 5.22939 5.31513 5.39699 5.58118 5.71072 5.80808 5.96846 6.01751 6.08603 6.12205 6.18273 6.23558 6.33220 6.39381 6.46621 6.56498 6.67643 6.70544 6.76674 6.98020 7.12061 7.15300 7.25156 8.05361 8.42127 9.02927 9.75374 10.17611 11.12442 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.013299 C = 0.010485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.991158 B = 2104.910390 C = 2669.851618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 C -0.157 4.157 4 N -0.599 5.599 5 C -0.265 4.265 6 H 0.078 0.922 7 C 0.041 3.959 8 N -0.888 5.888 9 Si 0.849 3.151 10 H -0.293 1.293 11 H -0.296 1.296 12 H -0.261 1.261 13 C 0.162 3.838 14 C -0.136 4.136 15 H 0.091 0.909 16 C -0.155 4.155 17 C 0.050 3.950 18 O -0.389 6.389 19 C 0.056 3.944 20 H 0.057 0.943 21 H 0.037 0.963 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.037 0.963 26 H 0.064 0.936 27 H 0.262 0.738 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 -4.096 -9.703 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 C -0.216 4.216 4 N -0.321 5.321 5 C -0.393 4.393 6 H 0.096 0.904 7 C -0.160 4.160 8 N -0.528 5.528 9 Si 0.677 3.323 10 H -0.220 1.220 11 H -0.223 1.223 12 H -0.186 1.186 13 C 0.036 3.964 14 C -0.157 4.157 15 H 0.109 0.891 16 C -0.194 4.194 17 C -0.027 4.027 18 O -0.308 6.308 19 C -0.019 4.019 20 H 0.076 0.924 21 H 0.057 0.943 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.503 -4.196 -9.604 10.588 hybrid contribution 1.394 0.293 0.208 1.440 sum 2.897 -3.903 -9.396 10.579 Atomic orbital electron populations 1.22185 0.97735 1.01473 0.99936 1.20433 0.92900 0.91776 0.89170 1.22185 0.99967 0.98456 1.00997 1.44231 1.55414 1.30041 1.02432 1.18609 0.96392 1.41006 0.83289 0.90408 1.25437 0.97324 0.98350 0.94865 1.70022 1.35104 1.47942 0.99713 0.87414 0.88771 0.77842 0.78289 1.22050 1.22290 1.18557 1.21168 0.91159 0.85232 0.98882 1.23423 0.98265 0.95810 0.98244 0.89078 1.22986 0.99805 0.97356 0.99207 1.23064 0.86771 0.96524 0.96355 1.88803 1.35824 1.20301 1.85903 1.23729 1.01232 0.81498 0.95489 0.92381 0.94349 0.92986 0.93307 0.94075 0.94355 0.91732 0.92862 0.92465 0.94635 0.91215 0.90861 0.93248 0.90623 0.88674 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.80 37.16 0.33 -2.42 16 2 C 0.16 3.11 2.55 -67.93 -0.17 2.94 16 3 C -0.16 -2.89 9.28 37.16 0.34 -2.55 16 4 N -0.60 -13.40 1.96 -165.66 -0.32 -13.73 16 5 C -0.26 -7.01 8.61 -15.06 -0.13 -7.14 16 6 H 0.08 2.24 7.02 -52.49 -0.37 1.87 16 7 C 0.04 1.15 5.11 -17.43 -0.09 1.06 16 8 N -0.89 -26.41 13.97 55.49 0.78 -25.64 16 9 Si 0.85 21.14 26.20 -169.99 -4.45 16.68 16 10 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.26 -6.12 5.60 56.52 0.32 -5.80 16 13 C 0.16 3.37 3.23 -4.04 -0.01 3.36 16 14 C -0.14 -2.55 3.37 -88.61 -0.30 -2.85 16 15 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 16 C -0.16 -2.41 6.60 -25.20 -0.17 -2.57 16 17 C 0.05 0.72 7.70 37.73 0.29 1.01 16 18 O -0.39 -6.78 11.52 -35.23 -0.41 -7.18 16 19 C 0.06 0.97 5.89 38.21 0.23 1.20 16 20 H 0.06 1.12 7.21 -51.93 -0.37 0.74 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.94 6.06 -51.93 -0.31 0.62 16 23 H 0.05 0.85 6.74 -51.93 -0.35 0.50 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.32 7.61 -51.93 -0.40 0.92 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.06 1.31 4.11 -51.93 -0.21 1.09 16 29 H 0.04 0.69 7.96 -51.93 -0.41 0.27 16 30 H 0.07 1.01 7.86 -51.93 -0.41 0.60 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 1.68 5.87 -51.93 -0.30 1.38 16 35 H 0.05 0.82 7.33 -51.92 -0.38 0.44 16 LS Contribution 267.69 15.07 4.03 4.03 Total: -1.00 -28.85 267.69 -5.76 -34.61 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.70 Total: -0.82 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 0.32 Total: -7.96 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.45 Total: -39.36 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.41 Total: -7.18 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.45 Total: 16.68 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.85 -5.76 -34.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.579 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds