Wall clock time and date at job start Mon Mar 30 2020 03:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47366 * 2 1 4 4 N 1.46500 * 109.46970 * 119.99804 * 2 1 3 5 5 C 1.36933 * 120.00075 * 303.82749 * 4 2 1 6 6 H 1.08002 * 120.00005 * 36.04168 * 5 4 2 7 7 C 1.38813 * 119.99919 * 216.03536 * 5 4 2 8 8 N 1.31625 * 119.99968 * 211.06165 * 7 5 4 9 9 Si 1.86794 * 120.00077 * 31.06305 * 7 5 4 10 10 H 1.48500 * 109.47104 * 94.93813 * 9 7 5 11 11 H 1.48494 * 109.47578 * 214.93656 * 9 7 5 12 12 H 1.48505 * 109.47155 * 334.94078 * 9 7 5 13 13 C 1.46501 * 119.99679 * 123.82561 * 4 2 1 14 14 C 1.53005 * 109.47097 * 272.60168 * 13 4 2 15 15 H 1.08998 * 110.83287 * 303.25952 * 14 13 4 16 16 C 1.54814 * 110.90597 * 179.60856 * 14 13 4 17 17 C 1.54105 * 104.18689 * 220.92308 * 16 14 13 18 18 O 1.43745 * 107.29408 * 357.97187 * 17 16 14 19 19 C 1.44376 * 106.97331 * 26.51189 * 18 17 16 20 20 H 1.09000 * 109.46872 * 307.25027 * 1 2 3 21 21 H 1.09006 * 109.47005 * 67.23920 * 1 2 3 22 22 H 1.08995 * 109.47383 * 187.23991 * 1 2 3 23 23 H 1.08999 * 109.47063 * 240.00139 * 2 1 3 24 24 H 1.08997 * 109.47203 * 184.42063 * 3 2 1 25 25 H 1.09004 * 109.46730 * 304.42057 * 3 2 1 26 26 H 1.09001 * 109.46714 * 64.41953 * 3 2 1 27 27 H 0.96998 * 119.99569 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.47020 * 152.60460 * 13 4 2 29 29 H 1.08995 * 109.47590 * 32.60229 * 13 4 2 30 30 H 1.08994 * 110.48787 * 339.60070 * 16 14 13 31 31 H 1.09005 * 110.48230 * 102.25103 * 16 14 13 32 32 H 1.08999 * 109.87448 * 117.39710 * 17 16 14 33 33 H 1.09001 * 109.87765 * 238.39846 * 17 16 14 34 34 H 1.09005 * 110.61859 * 201.43141 * 19 18 17 35 35 H 1.09009 * 110.61762 * 78.44170 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6241 -0.2702 2.4383 6 1 0.6208 0.0998 2.5900 7 6 2.5139 -0.3197 3.5026 8 7 2.0680 -0.5217 4.7244 9 14 4.3442 -0.0996 3.2008 10 1 4.7140 1.3223 3.4167 11 1 5.1078 -0.9579 4.1417 12 1 4.6658 -0.4881 1.8040 13 6 2.9283 -1.8310 1.0634 14 6 2.1147 -3.1160 0.8965 15 1 1.4275 -3.2509 1.7317 16 6 3.0458 -4.3433 0.7431 17 6 2.3744 -5.1919 -0.3542 18 8 1.1609 -4.5201 -0.7313 19 6 1.3521 -3.1164 -0.4529 20 1 -0.3633 0.6220 0.8180 21 1 -0.3633 0.3976 -0.9477 22 1 -0.3634 -1.0194 0.1295 23 1 1.8933 -0.5138 -0.8900 24 1 3.1272 1.4435 -0.0792 25 1 1.6135 1.9787 -0.8478 26 1 1.7428 1.9329 0.9270 27 1 2.6899 -0.5567 5.4680 28 1 3.5484 -1.9070 1.9567 29 1 3.5650 -1.6881 0.1903 30 1 4.0410 -4.0301 0.4279 31 1 3.0985 -4.9012 1.6781 32 1 3.0363 -5.2735 -1.2164 33 1 2.1461 -6.1849 0.0330 34 1 0.3917 -2.6109 -0.3512 35 1 1.9524 -2.6486 -1.2333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070715099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:35 Heat of formation + Delta-G solvation = -48.492047 kcal Electronic energy + Delta-G solvation = -15429.964799 eV Core-core repulsion = 13041.830438 eV Total energy + Delta-G solvation = -2388.134361 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.44352 -38.28465 -34.41310 -33.98567 -31.64572 -30.08814 -27.86937 -26.80884 -25.19608 -23.21191 -21.54102 -21.13454 -18.50649 -17.39149 -17.02267 -16.49273 -16.31345 -16.01521 -15.02857 -14.68608 -14.64068 -14.25773 -13.87360 -13.80593 -13.17918 -12.88468 -12.82244 -12.63526 -12.34102 -12.26159 -12.12277 -11.82637 -11.71418 -11.45041 -11.33038 -11.11694 -10.53354 -10.50768 -8.69448 -8.17762 -5.42592 1.34697 1.45579 1.51891 2.48321 2.97960 3.13052 3.39694 3.84567 3.95555 4.10353 4.24481 4.32257 4.43261 4.51676 4.59009 4.71156 4.82377 4.84026 4.88589 4.95221 4.98270 5.06795 5.13928 5.18047 5.20189 5.22231 5.44009 5.60036 5.66740 5.98349 6.01663 6.29219 7.08615 7.75712 8.17178 9.02973 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.013299 C = 0.010485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.991158 B = 2104.910390 C = 2669.851618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 C -0.152 4.152 4 N -0.608 5.608 5 C -0.240 4.240 6 H 0.041 0.959 7 C -0.016 4.016 8 N -0.941 5.941 9 Si 0.910 3.090 10 H -0.303 1.303 11 H -0.302 1.302 12 H -0.232 1.232 13 C 0.157 3.843 14 C -0.136 4.136 15 H 0.050 0.950 16 C -0.151 4.151 17 C 0.048 3.952 18 O -0.406 6.406 19 C 0.065 3.935 20 H 0.031 0.969 21 H 0.073 0.927 22 H 0.043 0.957 23 H 0.078 0.922 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.259 0.741 28 H 0.035 0.965 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 -4.716 -12.656 13.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.051 3.949 3 C -0.211 4.211 4 N -0.331 5.331 5 C -0.370 4.370 6 H 0.059 0.941 7 C -0.213 4.213 8 N -0.585 5.585 9 Si 0.738 3.262 10 H -0.232 1.232 11 H -0.230 1.230 12 H -0.155 1.155 13 C 0.032 3.968 14 C -0.158 4.158 15 H 0.069 0.931 16 C -0.189 4.189 17 C -0.028 4.028 18 O -0.326 6.326 19 C -0.011 4.011 20 H 0.050 0.950 21 H 0.092 0.908 22 H 0.062 0.938 23 H 0.096 0.904 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.855 -4.825 -12.613 13.803 hybrid contribution 0.867 0.461 1.069 1.452 sum 3.722 -4.365 -11.544 12.890 Atomic orbital electron populations 1.22104 0.97046 1.00703 1.00781 1.20695 0.93422 0.92231 0.88546 1.22129 1.00102 0.97969 1.00929 1.44365 1.55604 1.31123 1.02010 1.18435 0.94732 1.38669 0.85118 0.94121 1.25952 1.01235 0.99463 0.94618 1.70134 1.36340 1.51281 1.00742 0.86431 0.83673 0.76683 0.79408 1.23207 1.22978 1.15543 1.21235 0.91195 0.85462 0.98909 1.23218 0.98238 0.96395 0.97906 0.93128 1.22986 0.99987 0.95980 0.99987 1.23259 0.86078 0.96582 0.96902 1.88786 1.37512 1.20300 1.86022 1.23616 1.00762 0.81878 0.94830 0.95004 0.90827 0.93765 0.90393 0.94053 0.90930 0.94733 0.93237 0.94694 0.91874 0.89385 0.90829 0.90680 0.89107 0.89695 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 8.80 71.98 0.63 -4.39 16 2 C 0.16 5.56 2.55 44.99 0.11 5.67 16 3 C -0.15 -5.23 9.28 71.98 0.67 -4.56 16 4 N -0.61 -26.59 1.96 -678.01 -1.33 -27.92 16 5 C -0.24 -12.98 8.61 84.03 0.72 -12.25 16 6 H 0.04 2.48 7.02 -2.91 -0.02 2.45 16 7 C -0.02 -0.92 5.11 84.86 0.43 -0.49 16 8 N -0.94 -58.32 13.97 21.65 0.30 -58.02 16 9 Si 0.91 44.19 26.20 68.60 1.80 45.99 16 10 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 11 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 12 H -0.23 -10.05 5.60 99.48 0.56 -9.49 16 13 C 0.16 6.21 3.23 86.38 0.28 6.49 16 14 C -0.14 -4.90 3.37 -9.49 -0.03 -4.93 16 15 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 16 C -0.15 -4.27 6.60 31.59 0.21 -4.06 16 17 C 0.05 1.22 7.70 72.36 0.56 1.78 16 18 O -0.41 -13.05 11.52 -148.98 -1.72 -14.77 16 19 C 0.07 2.07 5.89 72.66 0.43 2.50 16 20 H 0.03 1.22 7.21 -2.39 -0.02 1.20 16 21 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 22 H 0.04 1.56 6.06 -2.39 -0.01 1.54 16 23 H 0.08 2.36 6.74 -2.39 -0.02 2.35 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.03 1.37 7.61 -2.39 -0.02 1.35 16 27 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.03 1.53 4.11 -2.38 -0.01 1.52 16 29 H 0.06 2.16 7.96 -2.39 -0.02 2.14 16 30 H 0.09 2.18 7.86 -2.39 -0.02 2.16 16 31 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.86 5.87 -2.38 -0.01 2.85 16 35 H 0.07 1.98 7.33 -2.38 -0.02 1.96 16 Total: -1.00 -63.85 267.69 3.97 -59.88 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.90 Total: 9.07 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 4.01 Total: -14.24 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -1.03 Total: -85.93 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -1.72 Total: -14.77 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.80 Total: 45.99 kcal Total: -63.85 3.97 -59.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.389 kcal (2) G-P(sol) polarization free energy of solvation -63.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds