Wall clock time and date at job start Mon Mar 30 2020 03:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47180 * 2 1 4 4 N 1.46506 * 109.46988 * 119.99871 * 2 1 3 5 5 C 1.36931 * 120.00342 * 113.81658 * 4 2 1 6 6 H 1.08004 * 120.00226 * 206.95516 * 5 4 2 7 7 C 1.38807 * 119.99923 * 26.95587 * 5 4 2 8 8 N 1.31621 * 120.00605 * 214.66925 * 7 5 4 9 9 Si 1.86810 * 120.00016 * 34.66782 * 7 5 4 10 10 H 1.48496 * 109.46998 * 270.00043 * 9 7 5 11 11 H 1.48495 * 109.47234 * 149.99870 * 9 7 5 12 12 H 1.48497 * 109.46705 * 30.00183 * 9 7 5 13 13 C 1.46501 * 119.99920 * 293.82072 * 4 2 1 14 14 C 1.53000 * 109.47016 * 270.00136 * 13 4 2 15 15 H 1.08995 * 110.45778 * 52.39271 * 14 13 4 16 16 C 1.54514 * 110.51139 * 175.00291 * 14 13 4 17 17 C 1.54478 * 104.06492 * 118.64130 * 16 14 13 18 18 O 1.44425 * 104.80282 * 23.97905 * 17 16 14 19 19 C 1.44430 * 105.27265 * 319.48581 * 18 17 16 20 20 H 1.08998 * 109.47403 * 300.00450 * 1 2 3 21 21 H 1.09005 * 109.46450 * 60.00259 * 1 2 3 22 22 H 1.09000 * 109.47196 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47403 * 239.99550 * 2 1 3 24 24 H 1.09006 * 109.46756 * 179.97438 * 3 2 1 25 25 H 1.08991 * 109.47185 * 299.99546 * 3 2 1 26 26 H 1.08997 * 109.46885 * 59.99802 * 3 2 1 27 27 H 0.97003 * 119.99509 * 354.86819 * 8 7 5 28 28 H 1.09007 * 109.47002 * 29.99714 * 13 4 2 29 29 H 1.09003 * 109.47531 * 149.99504 * 13 4 2 30 30 H 1.09008 * 110.50702 * 237.28615 * 16 14 13 31 31 H 1.08996 * 110.51277 * 359.85322 * 16 14 13 32 32 H 1.09004 * 110.36853 * 142.80889 * 17 16 14 33 33 H 1.09000 * 110.37153 * 265.14329 * 17 16 14 34 34 H 1.09001 * 110.36928 * 281.68036 * 19 18 17 35 35 H 1.08997 * 110.36717 * 159.34537 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.6980 -1.8731 1.0747 6 1 2.6823 -2.5905 1.8819 7 6 3.4072 -2.1498 -0.0860 8 7 3.4769 -3.3847 -0.5361 9 14 4.2628 -0.7695 -1.0093 10 1 3.3314 -0.1930 -2.0119 11 1 5.4633 -1.3055 -1.6997 12 1 4.6738 0.2870 -0.0502 13 6 1.7793 -0.1161 2.5226 14 6 2.9403 0.8084 2.8946 15 1 3.1168 1.5360 2.1025 16 6 2.6546 1.5243 4.2337 17 6 3.7938 1.0506 5.1632 18 8 4.8635 0.6690 4.2710 19 6 4.2184 -0.0133 3.1736 20 1 -0.3634 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6766 1.9563 0.8899 27 1 3.0967 -4.1117 -0.0186 28 1 0.8505 0.4543 2.5095 29 1 1.7031 -0.9176 3.2574 30 1 2.6922 2.6060 4.1040 31 1 1.6851 1.2216 4.6294 32 1 4.1148 1.8635 5.8146 33 1 3.4696 0.1946 5.7550 34 1 3.9593 -1.0325 3.4602 35 1 4.8656 -0.0177 2.2966 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070715102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:42 Heat of formation + Delta-G solvation = -30.504289 kcal Electronic energy + Delta-G solvation = -15571.864266 eV Core-core repulsion = 13184.509913 eV Total energy + Delta-G solvation = -2387.354353 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.04393 -36.79417 -32.54108 -32.23920 -30.10826 -28.44172 -26.54203 -25.38222 -22.41019 -22.12790 -20.17166 -19.27510 -17.37980 -15.86907 -15.39471 -15.24468 -14.57270 -14.15176 -13.50431 -13.30476 -12.90720 -12.63150 -12.21308 -12.08489 -11.76403 -11.49813 -11.29246 -11.01749 -10.93329 -10.67136 -10.49474 -10.11763 -9.87061 -9.65966 -9.59477 -9.26501 -9.16887 -8.27254 -7.10494 -6.28313 -3.23525 3.41100 3.52644 3.68425 4.48612 4.57257 4.85800 5.17316 5.19933 5.33932 5.48941 5.63374 5.74277 5.78034 5.95740 6.02910 6.08152 6.15597 6.17153 6.21877 6.31450 6.40645 6.43202 6.49869 6.54274 6.63108 6.68233 6.93514 7.02109 7.07893 7.32598 8.09500 8.48101 9.07545 9.69068 10.25522 11.07590 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.013323 C = 0.011303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.219664 B = 2101.171070 C = 2476.554002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.151 3.849 3 C -0.176 4.176 4 N -0.594 5.594 5 C -0.356 4.356 6 H 0.064 0.936 7 C -0.005 4.005 8 N -0.903 5.903 9 Si 1.041 2.959 10 H -0.291 1.291 11 H -0.300 1.300 12 H -0.281 1.281 13 C 0.158 3.842 14 C -0.147 4.147 15 H 0.080 0.920 16 C -0.152 4.152 17 C 0.047 3.953 18 O -0.391 6.391 19 C 0.065 3.935 20 H 0.043 0.957 21 H 0.041 0.959 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.266 0.734 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.331 9.703 6.077 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 C -0.235 4.235 4 N -0.316 5.316 5 C -0.484 4.484 6 H 0.081 0.919 7 C -0.209 4.209 8 N -0.541 5.541 9 Si 0.874 3.126 10 H -0.219 1.219 11 H -0.228 1.228 12 H -0.208 1.208 13 C 0.031 3.969 14 C -0.168 4.168 15 H 0.099 0.901 16 C -0.190 4.190 17 C -0.031 4.031 18 O -0.310 6.310 19 C -0.011 4.011 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.229 10.023 4.745 11.311 hybrid contribution -1.038 -0.261 1.352 1.724 sum -3.267 9.762 6.096 11.964 Atomic orbital electron populations 1.22231 0.98523 1.01218 0.99623 1.20680 0.92122 0.91327 0.91446 1.22609 1.01670 0.98695 1.00526 1.44273 1.63674 1.24270 0.99339 1.19979 1.29165 0.93111 1.06166 0.91873 1.25996 0.97264 1.01032 0.96601 1.70931 1.48005 1.00651 1.34538 0.84237 0.76975 0.75699 0.75729 1.21903 1.22804 1.20777 1.20892 0.93489 0.94056 0.88437 1.23449 0.98549 0.98626 0.96161 0.90147 1.22989 0.99030 1.00454 0.96543 1.23287 0.87920 0.98725 0.93122 1.89059 1.30328 1.76748 1.34878 1.23422 0.93529 0.95329 0.88808 0.93832 0.93949 0.92747 0.90240 0.92464 0.93437 0.92853 0.92393 0.94027 0.93538 0.91662 0.91027 0.90198 0.92956 0.91790 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.27 37.16 0.34 -2.54 16 2 C 0.15 3.21 2.19 -67.93 -0.15 3.06 16 3 C -0.18 -3.26 7.29 37.16 0.27 -2.99 16 4 N -0.59 -13.56 2.13 -165.66 -0.35 -13.92 16 5 C -0.36 -9.54 8.75 -15.06 -0.13 -9.67 16 6 H 0.06 1.83 8.06 -52.48 -0.42 1.41 16 7 C -0.01 -0.14 4.93 -17.43 -0.09 -0.23 16 8 N -0.90 -27.37 13.70 55.49 0.76 -26.61 16 9 Si 1.04 25.82 24.19 -169.99 -4.11 21.70 16 10 H -0.29 -6.84 6.47 56.52 0.37 -6.47 16 11 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 12 H -0.28 -6.60 6.14 56.52 0.35 -6.25 16 13 C 0.16 3.06 4.16 -4.04 -0.02 3.04 16 14 C -0.15 -2.64 3.01 -89.05 -0.27 -2.91 16 15 H 0.08 1.51 5.38 -51.93 -0.28 1.23 16 16 C -0.15 -2.19 6.74 -25.16 -0.17 -2.36 16 17 C 0.05 0.69 7.63 37.93 0.29 0.98 16 18 O -0.39 -7.39 11.65 -35.23 -0.41 -7.80 16 19 C 0.07 1.30 6.37 37.93 0.24 1.54 16 20 H 0.04 0.73 6.92 -51.93 -0.36 0.37 16 21 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 23 H 0.08 1.91 4.22 -51.93 -0.22 1.69 16 24 H 0.06 1.13 4.98 -51.93 -0.26 0.87 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.90 6.53 -51.93 -0.34 0.56 16 27 H 0.27 7.99 8.73 -40.82 -0.36 7.64 16 28 H 0.04 0.73 6.72 -51.92 -0.35 0.38 16 29 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 30 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.07 0.93 7.73 -51.93 -0.40 0.53 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 1.35 7.53 -51.93 -0.39 0.96 16 35 H 0.09 1.96 8.04 -51.93 -0.42 1.54 16 LS Contribution 263.28 15.07 3.97 3.97 Total: -1.00 -29.02 263.28 -5.45 -34.47 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.63 Total: 0.26 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 0.33 Total: -12.08 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.41 Total: -40.53 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.41 Total: -7.80 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -4.11 Total: 21.70 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.02 -5.45 -34.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.961 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds