Wall clock time and date at job start Mon Mar 30 2020 03:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47180 * 2 1 4 4 N 1.46506 * 109.46988 * 119.99871 * 2 1 3 5 5 C 1.36931 * 120.00342 * 113.81658 * 4 2 1 6 6 H 1.08004 * 120.00226 * 206.95516 * 5 4 2 7 7 C 1.38807 * 119.99923 * 26.95587 * 5 4 2 8 8 N 1.31621 * 120.00605 * 214.66925 * 7 5 4 9 9 Si 1.86810 * 120.00016 * 34.66782 * 7 5 4 10 10 H 1.48496 * 109.46998 * 270.00043 * 9 7 5 11 11 H 1.48495 * 109.47234 * 149.99870 * 9 7 5 12 12 H 1.48497 * 109.46705 * 30.00183 * 9 7 5 13 13 C 1.46501 * 119.99920 * 293.82072 * 4 2 1 14 14 C 1.53000 * 109.47016 * 270.00136 * 13 4 2 15 15 H 1.08995 * 110.45778 * 52.39271 * 14 13 4 16 16 C 1.54514 * 110.51139 * 175.00291 * 14 13 4 17 17 C 1.54478 * 104.06492 * 118.64130 * 16 14 13 18 18 O 1.44425 * 104.80282 * 23.97905 * 17 16 14 19 19 C 1.44430 * 105.27265 * 319.48581 * 18 17 16 20 20 H 1.08998 * 109.47403 * 300.00450 * 1 2 3 21 21 H 1.09005 * 109.46450 * 60.00259 * 1 2 3 22 22 H 1.09000 * 109.47196 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47403 * 239.99550 * 2 1 3 24 24 H 1.09006 * 109.46756 * 179.97438 * 3 2 1 25 25 H 1.08991 * 109.47185 * 299.99546 * 3 2 1 26 26 H 1.08997 * 109.46885 * 59.99802 * 3 2 1 27 27 H 0.97003 * 119.99509 * 354.86819 * 8 7 5 28 28 H 1.09007 * 109.47002 * 29.99714 * 13 4 2 29 29 H 1.09003 * 109.47531 * 149.99504 * 13 4 2 30 30 H 1.09008 * 110.50702 * 237.28615 * 16 14 13 31 31 H 1.08996 * 110.51277 * 359.85322 * 16 14 13 32 32 H 1.09004 * 110.36853 * 142.80889 * 17 16 14 33 33 H 1.09000 * 110.37153 * 265.14329 * 17 16 14 34 34 H 1.09001 * 110.36928 * 281.68036 * 19 18 17 35 35 H 1.08997 * 110.36717 * 159.34537 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.6980 -1.8731 1.0747 6 1 2.6823 -2.5905 1.8819 7 6 3.4072 -2.1498 -0.0860 8 7 3.4769 -3.3847 -0.5361 9 14 4.2628 -0.7695 -1.0093 10 1 3.3314 -0.1930 -2.0119 11 1 5.4633 -1.3055 -1.6997 12 1 4.6738 0.2870 -0.0502 13 6 1.7793 -0.1161 2.5226 14 6 2.9403 0.8084 2.8946 15 1 3.1168 1.5360 2.1025 16 6 2.6546 1.5243 4.2337 17 6 3.7938 1.0506 5.1632 18 8 4.8635 0.6690 4.2710 19 6 4.2184 -0.0133 3.1736 20 1 -0.3634 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6766 1.9563 0.8899 27 1 3.0967 -4.1117 -0.0186 28 1 0.8505 0.4543 2.5095 29 1 1.7031 -0.9176 3.2574 30 1 2.6922 2.6060 4.1040 31 1 1.6851 1.2216 4.6294 32 1 4.1148 1.8635 5.8146 33 1 3.4696 0.1946 5.7550 34 1 3.9593 -1.0325 3.4602 35 1 4.8656 -0.0177 2.2966 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070715102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:41 Heat of formation + Delta-G solvation = -50.066290 kcal Electronic energy + Delta-G solvation = -15572.712538 eV Core-core repulsion = 13184.509913 eV Total energy + Delta-G solvation = -2388.202625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.48634 -38.46286 -34.34857 -33.95008 -31.71761 -29.91338 -27.99784 -27.13416 -24.17306 -23.55673 -21.74290 -20.88229 -19.31045 -17.36103 -17.05984 -16.70923 -16.11149 -15.78583 -15.31440 -14.91898 -14.51996 -14.27451 -13.77913 -13.61281 -13.18168 -13.10061 -12.80732 -12.63042 -12.33525 -12.25481 -11.93941 -11.78576 -11.50593 -11.37846 -11.24774 -11.04003 -10.70540 -10.36925 -9.09494 -8.44600 -5.37241 1.40676 1.53120 1.69869 2.52690 3.01135 3.14706 3.40076 3.89160 3.94326 4.11445 4.20364 4.28824 4.43590 4.48383 4.60592 4.72951 4.77162 4.85508 4.87126 4.90990 4.95340 4.99276 5.02853 5.10861 5.15899 5.20607 5.36443 5.50720 5.56985 5.88561 5.94633 6.34515 6.99967 7.73414 8.19218 8.86795 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.013323 C = 0.011303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.219664 B = 2101.171070 C = 2476.554002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.139 3.861 3 C -0.170 4.170 4 N -0.607 5.607 5 C -0.327 4.327 6 H 0.028 0.972 7 C -0.058 4.058 8 N -0.946 5.946 9 Si 1.079 2.921 10 H -0.268 1.268 11 H -0.316 1.316 12 H -0.263 1.263 13 C 0.159 3.841 14 C -0.142 4.142 15 H 0.080 0.920 16 C -0.140 4.140 17 C 0.038 3.962 18 O -0.409 6.409 19 C 0.068 3.932 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.030 0.970 23 H 0.047 0.953 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.250 0.750 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.641 13.073 6.951 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.033 3.967 3 C -0.228 4.228 4 N -0.329 5.329 5 C -0.457 4.457 6 H 0.046 0.954 7 C -0.255 4.255 8 N -0.588 5.588 9 Si 0.907 3.093 10 H -0.195 1.195 11 H -0.245 1.245 12 H -0.188 1.188 13 C 0.034 3.966 14 C -0.163 4.163 15 H 0.098 0.902 16 C -0.178 4.178 17 C -0.038 4.038 18 O -0.328 6.328 19 C -0.008 4.008 20 H 0.083 0.917 21 H 0.087 0.913 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.574 13.443 5.650 15.013 hybrid contribution -0.689 -1.325 1.225 1.932 sum -4.263 12.117 6.875 14.570 Atomic orbital electron populations 1.22110 0.96061 1.00520 1.01998 1.20844 0.94052 0.92519 0.89280 1.22511 1.00615 0.96699 1.02949 1.44374 1.63332 1.23654 1.01538 1.19785 1.27689 0.93837 1.04422 0.95418 1.26933 0.98255 1.01862 0.98485 1.71050 1.50879 1.01275 1.35558 0.83746 0.75757 0.74040 0.75742 1.19497 1.24489 1.18834 1.20980 0.95287 0.94192 0.86185 1.23310 0.96462 0.98074 0.98425 0.90211 1.22958 0.99756 1.01349 0.93784 1.23608 0.87214 1.00064 0.92957 1.89037 1.32094 1.76550 1.35149 1.23185 0.94236 0.94940 0.88445 0.91710 0.91280 0.95029 0.93479 0.94047 0.90798 0.90683 0.94045 0.91060 0.94804 0.89362 0.88952 0.87160 0.92387 0.94130 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 9.27 71.98 0.67 -4.30 16 2 C 0.14 5.58 2.19 44.99 0.10 5.68 16 3 C -0.17 -5.57 7.29 71.98 0.52 -5.05 16 4 N -0.61 -27.15 2.13 -678.01 -1.44 -28.60 16 5 C -0.33 -18.04 8.75 84.03 0.74 -17.30 16 6 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 7 C -0.06 -3.39 4.93 84.86 0.42 -2.97 16 8 N -0.95 -59.97 13.70 21.65 0.30 -59.67 16 9 Si 1.08 52.99 24.19 68.60 1.66 54.65 16 10 H -0.27 -12.08 6.47 99.48 0.64 -11.44 16 11 H -0.32 -16.21 7.11 99.48 0.71 -15.50 16 12 H -0.26 -11.96 6.14 99.48 0.61 -11.35 16 13 C 0.16 5.80 4.16 86.38 0.36 6.16 16 14 C -0.14 -4.74 3.01 -9.78 -0.03 -4.76 16 15 H 0.08 2.72 5.38 -2.39 -0.01 2.71 16 16 C -0.14 -3.44 6.74 31.61 0.21 -3.22 16 17 C 0.04 0.99 7.63 72.48 0.55 1.54 16 18 O -0.41 -14.85 11.65 -148.98 -1.74 -16.59 16 19 C 0.07 2.72 6.37 72.48 0.46 3.18 16 20 H 0.06 1.88 6.92 -2.39 -0.02 1.87 16 21 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 22 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.05 2.21 4.22 -2.39 -0.01 2.20 16 24 H 0.04 1.49 4.98 -2.38 -0.01 1.48 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.07 2.13 6.53 -2.39 -0.02 2.11 16 27 H 0.25 15.98 8.73 -92.71 -0.81 15.17 16 28 H 0.07 2.20 6.72 -2.38 -0.02 2.18 16 29 H 0.03 1.31 7.86 -2.39 -0.02 1.29 16 30 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.09 1.92 7.73 -2.39 -0.02 1.90 16 32 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.77 7.53 -2.39 -0.02 1.75 16 35 H 0.06 2.75 8.04 -2.39 -0.02 2.73 16 Total: -1.00 -65.51 263.28 3.63 -61.88 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.85 Total: 9.36 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 4.00 Total: -21.03 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -1.15 Total: -88.27 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -1.74 Total: -16.59 kcal Atomic # 14 Polarization: 52.99 SS G_CDS: 1.66 Total: 54.65 kcal Total: -65.51 3.63 -61.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.812 kcal (2) G-P(sol) polarization free energy of solvation -65.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds