Wall clock time and date at job start Mon Mar 30 2020 03:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47016 * 2 1 4 4 N 1.46501 * 109.47202 * 120.00598 * 2 1 3 5 5 C 1.36939 * 119.99551 * 295.25206 * 4 2 1 6 6 H 1.08003 * 119.99562 * 234.95522 * 5 4 2 7 7 C 1.38812 * 119.99856 * 54.95834 * 5 4 2 8 8 N 1.31617 * 120.00064 * 37.71319 * 7 5 4 9 9 Si 1.86800 * 119.99784 * 217.71157 * 7 5 4 10 10 H 1.48502 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46906 * 120.00153 * 9 7 5 12 12 H 1.48501 * 109.47345 * 240.00123 * 9 7 5 13 13 C 1.46496 * 120.00147 * 115.25323 * 4 2 1 14 14 H 1.09003 * 110.05688 * 358.58380 * 13 4 2 15 15 C 1.54265 * 110.03209 * 237.16495 * 13 4 2 16 16 C 1.54896 * 104.19409 * 217.10515 * 15 13 4 17 17 C 1.54887 * 102.74608 * 37.94319 * 16 15 13 18 18 C 1.53877 * 110.03133 * 119.99873 * 13 4 2 19 19 H 1.08998 * 110.03287 * 238.57184 * 18 13 4 20 20 O 1.42898 * 110.07438 * 359.97438 * 18 13 4 21 21 H 1.09001 * 109.47696 * 309.43047 * 1 2 3 22 22 H 1.08999 * 109.47525 * 69.43353 * 1 2 3 23 23 H 1.09000 * 109.47472 * 189.43182 * 1 2 3 24 24 H 1.09005 * 109.46599 * 240.00388 * 2 1 3 25 25 H 1.09005 * 109.47194 * 174.42634 * 3 2 1 26 26 H 1.08994 * 109.47841 * 294.42651 * 3 2 1 27 27 H 1.09001 * 109.46937 * 54.43035 * 3 2 1 28 28 H 0.97006 * 119.99758 * 179.97438 * 8 7 5 29 29 H 1.09007 * 110.48411 * 98.42972 * 15 13 4 30 30 H 1.08997 * 110.59780 * 335.83964 * 15 13 4 31 31 H 1.09002 * 110.75546 * 279.62544 * 16 15 13 32 32 H 1.09005 * 110.90789 * 156.33277 * 16 15 13 33 33 H 1.09003 * 110.48485 * 203.37486 * 17 16 15 34 34 H 1.08998 * 110.59952 * 80.79364 * 17 16 15 35 35 H 0.96692 * 114.00260 * 179.28640 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7695 -0.1690 2.4375 6 1 2.5875 0.0246 3.1157 7 6 0.4661 0.1110 2.8242 8 7 -0.5133 -0.6925 2.4672 9 14 0.1021 1.6283 3.8513 10 1 1.3661 2.3611 4.1170 11 1 -0.8361 2.5119 3.1136 12 1 -0.5131 1.2184 5.1392 13 6 2.7728 -1.9395 1.0641 14 1 2.8541 -2.2179 0.0133 15 6 2.0753 -3.0645 1.8564 16 6 3.2430 -3.8940 2.4461 17 6 4.2809 -2.8062 2.8185 18 6 4.1751 -1.7753 1.6759 19 1 4.9369 -1.9739 0.9221 20 8 4.3325 -0.4527 2.1936 21 1 -0.3634 0.6527 0.7937 22 1 -0.3634 0.3610 -0.9621 23 1 -0.3634 -1.0137 0.1684 24 1 1.8932 -0.5138 -0.8901 25 1 3.1254 1.4441 0.0998 26 1 1.7604 1.9267 -0.9356 27 1 1.5974 1.9842 0.8359 28 1 -1.4241 -0.4970 2.7377 29 1 1.4682 -3.6793 1.1917 30 1 1.4620 -2.6476 2.6551 31 1 3.6490 -4.5754 1.6985 32 1 2.9224 -4.4417 3.3323 33 1 5.2834 -3.2325 2.8562 34 1 4.0274 -2.3451 3.7731 35 1 5.1934 -0.2904 2.6028 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070715194.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:41 Heat of formation + Delta-G solvation = -22.395756 kcal Electronic energy + Delta-G solvation = -15885.043921 eV Core-core repulsion = 13498.041180 eV Total energy + Delta-G solvation = -2387.002741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -38.20963 -35.47398 -33.89794 -31.47150 -29.96618 -26.75030 -26.25666 -25.60556 -23.30544 -20.03898 -19.55472 -18.92059 -16.60937 -16.01635 -14.67749 -14.30168 -14.23452 -13.55663 -13.16608 -12.84800 -12.32155 -12.17833 -11.60794 -11.49249 -11.05756 -10.87031 -10.73165 -10.64852 -10.37010 -10.26177 -10.06331 -9.98737 -9.69570 -9.62720 -9.46206 -9.30871 -8.85562 -7.72438 -6.22025 -5.48552 -3.18701 3.42992 3.55240 3.62197 4.63738 5.14370 5.32118 5.42942 5.48604 5.65520 5.80601 6.03028 6.26536 6.31009 6.38801 6.45403 6.54859 6.58398 6.69730 6.73341 6.78462 6.83988 6.97810 7.09030 7.13010 7.29279 7.32462 7.63759 7.73231 8.00815 8.20722 8.61227 9.07740 9.47871 10.02217 10.80934 11.26146 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028128 B = 0.014160 C = 0.013076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.224755 B = 1976.963251 C = 2140.787347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.179 3.821 3 C -0.141 4.141 4 N -0.560 5.560 5 C -0.251 4.251 6 H 0.070 0.930 7 C 0.040 3.960 8 N -0.851 5.851 9 Si 0.854 3.146 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.294 1.294 13 C 0.176 3.824 14 H 0.045 0.955 15 C -0.125 4.125 16 C -0.123 4.123 17 C -0.149 4.149 18 C 0.088 3.912 19 H 0.029 0.971 20 O -0.516 6.516 21 H 0.063 0.937 22 H 0.002 0.998 23 H 0.063 0.937 24 H 0.031 0.969 25 H 0.045 0.955 26 H 0.025 0.975 27 H 0.053 0.947 28 H 0.248 0.752 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 -2.770 -2.326 7.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.072 3.928 3 C -0.200 4.200 4 N -0.281 5.281 5 C -0.381 4.381 6 H 0.087 0.913 7 C -0.163 4.163 8 N -0.489 5.489 9 Si 0.682 3.318 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.221 1.221 13 C 0.068 3.932 14 H 0.064 0.936 15 C -0.164 4.164 16 C -0.161 4.161 17 C -0.187 4.187 18 C 0.026 3.974 19 H 0.047 0.953 20 O -0.316 6.316 21 H 0.082 0.918 22 H 0.021 0.979 23 H 0.082 0.918 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.958 -2.721 -2.565 7.034 hybrid contribution 0.170 0.691 0.749 1.033 sum 6.128 -2.030 -1.816 6.706 Atomic orbital electron populations 1.22418 0.97413 1.03198 0.97108 1.20356 0.92927 0.91277 0.88215 1.22007 1.00492 0.98685 0.98831 1.43618 1.62546 1.20079 1.01820 1.18845 0.89596 1.36510 0.93105 0.91293 1.25378 0.97755 0.97394 0.95779 1.70483 1.00114 1.32584 1.45741 0.87086 0.78088 0.86709 0.79963 1.19812 1.21612 1.22147 1.21064 0.88970 0.88410 0.94720 0.93640 1.22785 0.96568 0.95734 1.01272 1.22365 0.97362 0.96821 0.99587 1.23015 0.97584 0.97627 1.00519 1.23043 0.98947 0.82372 0.93003 0.95279 1.87173 1.35969 1.29753 1.78700 0.91765 0.97891 0.91823 0.95089 0.93607 0.95588 0.92820 0.94190 0.93839 0.88088 0.93099 0.92741 0.93637 0.90812 0.81745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 7.65 37.15 0.28 -3.11 16 2 C 0.18 4.12 3.36 -67.94 -0.23 3.89 16 3 C -0.14 -3.06 8.98 37.15 0.33 -2.73 16 4 N -0.56 -13.55 1.98 -156.89 -0.31 -13.86 16 5 C -0.25 -6.65 5.89 -15.06 -0.09 -6.74 16 6 H 0.07 1.94 6.10 -52.48 -0.32 1.62 16 7 C 0.04 1.08 3.46 -17.43 -0.06 1.02 16 8 N -0.85 -23.52 10.63 55.49 0.59 -22.93 16 9 Si 0.85 21.32 29.68 -169.99 -5.05 16.28 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 13 C 0.18 3.78 3.44 -66.81 -0.23 3.55 16 14 H 0.05 0.93 7.60 -51.93 -0.39 0.54 16 15 C -0.12 -2.62 6.40 -25.07 -0.16 -2.78 16 16 C -0.12 -2.11 6.91 -24.74 -0.17 -2.29 16 17 C -0.15 -2.54 6.55 -25.08 -0.16 -2.70 16 18 C 0.09 1.66 4.15 -25.62 -0.11 1.55 16 19 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 20 O -0.52 -10.38 9.71 -35.23 -0.34 -10.73 16 21 H 0.06 1.68 5.55 -51.93 -0.29 1.39 16 22 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 23 H 0.06 1.64 7.33 -51.93 -0.38 1.26 16 24 H 0.03 0.67 7.58 -51.93 -0.39 0.28 16 25 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 1.26 7.73 -51.93 -0.40 0.86 16 28 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 2.55 7.01 -51.93 -0.36 2.18 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 35 H 0.34 5.24 9.11 45.56 0.41 5.66 16 LS Contribution 269.64 15.07 4.06 4.06 Total: -1.00 -28.26 269.64 -6.70 -34.96 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.06 Total: 2.55 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -0.59 Total: -10.33 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.28 Total: -36.79 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.34 Total: -10.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.05 Total: 16.28 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.26 -6.70 -34.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715194.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.563 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds