Wall clock time and date at job start Mon Mar 30 2020 03:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47016 * 2 1 4 4 N 1.46501 * 109.47202 * 120.00598 * 2 1 3 5 5 C 1.36939 * 119.99551 * 295.25206 * 4 2 1 6 6 H 1.08003 * 119.99562 * 234.95522 * 5 4 2 7 7 C 1.38812 * 119.99856 * 54.95834 * 5 4 2 8 8 N 1.31617 * 120.00064 * 37.71319 * 7 5 4 9 9 Si 1.86800 * 119.99784 * 217.71157 * 7 5 4 10 10 H 1.48502 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46906 * 120.00153 * 9 7 5 12 12 H 1.48501 * 109.47345 * 240.00123 * 9 7 5 13 13 C 1.46496 * 120.00147 * 115.25323 * 4 2 1 14 14 H 1.09003 * 110.05688 * 358.58380 * 13 4 2 15 15 C 1.54265 * 110.03209 * 237.16495 * 13 4 2 16 16 C 1.54896 * 104.19409 * 217.10515 * 15 13 4 17 17 C 1.54887 * 102.74608 * 37.94319 * 16 15 13 18 18 C 1.53877 * 110.03133 * 119.99873 * 13 4 2 19 19 H 1.08998 * 110.03287 * 238.57184 * 18 13 4 20 20 O 1.42898 * 110.07438 * 359.97438 * 18 13 4 21 21 H 1.09001 * 109.47696 * 309.43047 * 1 2 3 22 22 H 1.08999 * 109.47525 * 69.43353 * 1 2 3 23 23 H 1.09000 * 109.47472 * 189.43182 * 1 2 3 24 24 H 1.09005 * 109.46599 * 240.00388 * 2 1 3 25 25 H 1.09005 * 109.47194 * 174.42634 * 3 2 1 26 26 H 1.08994 * 109.47841 * 294.42651 * 3 2 1 27 27 H 1.09001 * 109.46937 * 54.43035 * 3 2 1 28 28 H 0.97006 * 119.99758 * 179.97438 * 8 7 5 29 29 H 1.09007 * 110.48411 * 98.42972 * 15 13 4 30 30 H 1.08997 * 110.59780 * 335.83964 * 15 13 4 31 31 H 1.09002 * 110.75546 * 279.62544 * 16 15 13 32 32 H 1.09005 * 110.90789 * 156.33277 * 16 15 13 33 33 H 1.09003 * 110.48485 * 203.37486 * 17 16 15 34 34 H 1.08998 * 110.59952 * 80.79364 * 17 16 15 35 35 H 0.96692 * 114.00260 * 179.28640 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7695 -0.1690 2.4375 6 1 2.5875 0.0246 3.1157 7 6 0.4661 0.1110 2.8242 8 7 -0.5133 -0.6925 2.4672 9 14 0.1021 1.6283 3.8513 10 1 1.3661 2.3611 4.1170 11 1 -0.8361 2.5119 3.1136 12 1 -0.5131 1.2184 5.1392 13 6 2.7728 -1.9395 1.0641 14 1 2.8541 -2.2179 0.0133 15 6 2.0753 -3.0645 1.8564 16 6 3.2430 -3.8940 2.4461 17 6 4.2809 -2.8062 2.8185 18 6 4.1751 -1.7753 1.6759 19 1 4.9369 -1.9739 0.9221 20 8 4.3325 -0.4527 2.1936 21 1 -0.3634 0.6527 0.7937 22 1 -0.3634 0.3610 -0.9621 23 1 -0.3634 -1.0137 0.1684 24 1 1.8932 -0.5138 -0.8901 25 1 3.1254 1.4441 0.0998 26 1 1.7604 1.9267 -0.9356 27 1 1.5974 1.9842 0.8359 28 1 -1.4241 -0.4970 2.7377 29 1 1.4682 -3.6793 1.1917 30 1 1.4620 -2.6476 2.6551 31 1 3.6490 -4.5754 1.6985 32 1 2.9224 -4.4417 3.3323 33 1 5.2834 -3.2325 2.8562 34 1 4.0274 -2.3451 3.7731 35 1 5.1934 -0.2904 2.6028 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070715194.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:40 Heat of formation + Delta-G solvation = -40.088983 kcal Electronic energy + Delta-G solvation = -15885.811157 eV Core-core repulsion = 13498.041180 eV Total energy + Delta-G solvation = -2387.769976 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.81093 -37.24050 -35.43374 -33.48099 -31.71998 -28.34802 -27.96320 -27.41336 -25.19904 -21.54332 -21.35934 -20.58702 -18.21861 -17.89373 -16.34793 -16.27688 -15.92984 -15.12011 -14.86057 -14.46639 -14.18074 -13.99169 -13.33864 -13.21592 -12.93934 -12.71119 -12.60059 -12.31532 -12.24071 -11.86539 -11.78458 -11.69527 -11.44225 -11.35648 -11.24672 -11.01852 -10.33888 -9.77893 -8.23388 -7.43679 -5.23576 1.40053 1.49671 1.58458 2.61031 3.27209 3.59923 3.96651 4.01485 4.08505 4.40365 4.48806 4.62554 4.77598 4.79018 4.89219 4.95535 5.00343 5.03501 5.07474 5.24349 5.27007 5.34118 5.41867 5.42650 5.49624 5.61122 5.79086 5.95561 6.04317 6.13180 7.00142 7.29338 7.53384 8.09676 8.81388 9.20253 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028128 B = 0.014160 C = 0.013076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.224755 B = 1976.963251 C = 2140.787347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.170 3.830 3 C -0.130 4.130 4 N -0.572 5.572 5 C -0.237 4.237 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.873 5.873 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.294 1.294 12 H -0.299 1.299 13 C 0.161 3.839 14 H 0.056 0.944 15 C -0.123 4.123 16 C -0.113 4.113 17 C -0.141 4.141 18 C 0.091 3.909 19 H 0.056 0.944 20 O -0.544 6.544 21 H 0.037 0.963 22 H 0.026 0.974 23 H 0.037 0.963 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.027 0.973 28 H 0.242 0.758 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.587 -3.221 -3.189 9.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.063 3.937 3 C -0.188 4.188 4 N -0.292 5.292 5 C -0.367 4.367 6 H 0.070 0.930 7 C -0.195 4.195 8 N -0.513 5.513 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.221 1.221 12 H -0.227 1.227 13 C 0.054 3.946 14 H 0.074 0.926 15 C -0.162 4.162 16 C -0.151 4.151 17 C -0.179 4.179 18 C 0.030 3.970 19 H 0.074 0.926 20 O -0.348 6.348 21 H 0.056 0.944 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 7.795 -3.171 -3.420 9.084 hybrid contribution -0.349 0.807 0.970 1.309 sum 7.447 -2.364 -2.450 8.188 Atomic orbital electron populations 1.22216 0.98254 1.00954 0.97330 1.20500 0.92272 0.92354 0.88547 1.21868 1.00157 0.97576 0.99232 1.43737 1.62818 1.21314 1.01361 1.18720 0.88852 1.35526 0.93607 0.92952 1.25731 0.98008 0.98771 0.97027 1.70557 0.99908 1.33369 1.47476 0.86431 0.77485 0.84904 0.78751 1.19929 1.22118 1.22651 1.21359 0.90208 0.87274 0.95714 0.92623 1.22625 0.97426 0.96358 0.99799 1.22327 0.95644 0.96821 1.00351 1.22937 0.99375 0.96908 0.98689 1.22959 0.97613 0.82369 0.94107 0.92607 1.87076 1.37999 1.30556 1.79147 0.94416 0.95480 0.94394 0.93221 0.93535 0.92769 0.95379 0.94791 0.94304 0.92816 0.90216 0.92216 0.90013 0.92978 0.79335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 7.65 71.98 0.55 -5.54 16 2 C 0.17 7.61 3.36 44.99 0.15 7.76 16 3 C -0.13 -5.40 8.98 71.98 0.65 -4.75 16 4 N -0.57 -27.33 1.98 -650.27 -1.29 -28.62 16 5 C -0.24 -12.62 5.89 84.03 0.49 -12.12 16 6 H 0.05 2.98 6.10 -2.91 -0.02 2.97 16 7 C 0.01 0.30 3.46 84.86 0.29 0.59 16 8 N -0.87 -49.54 10.63 21.65 0.23 -49.31 16 9 Si 0.90 44.69 29.68 68.60 2.04 46.73 16 10 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 12 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 13 C 0.16 6.68 3.44 45.72 0.16 6.84 16 14 H 0.06 2.16 7.60 -2.39 -0.02 2.14 16 15 C -0.12 -5.10 6.40 31.67 0.20 -4.90 16 16 C -0.11 -3.60 6.91 31.89 0.22 -3.38 16 17 C -0.14 -4.38 6.55 31.67 0.21 -4.17 16 18 C 0.09 3.16 4.15 31.32 0.13 3.29 16 19 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 20 O -0.54 -20.93 9.71 -148.98 -1.45 -22.38 16 21 H 0.04 1.97 5.55 -2.39 -0.01 1.95 16 22 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.04 1.95 7.33 -2.39 -0.02 1.94 16 24 H 0.05 2.04 7.58 -2.38 -0.02 2.02 16 25 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.03 1.28 7.73 -2.39 -0.02 1.26 16 28 H 0.24 13.56 8.31 -92.70 -0.77 12.79 16 29 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.05 2.76 7.01 -2.39 -0.02 2.74 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.36 10.32 9.11 -74.06 -0.67 9.65 16 Total: -1.00 -60.98 269.64 2.97 -58.01 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.38 Total: 11.94 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 3.05 Total: -16.38 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -1.06 Total: -77.93 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -1.45 Total: -22.38 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.04 Total: 46.73 kcal Total: -60.98 2.97 -58.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715194.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.924 kcal (2) G-P(sol) polarization free energy of solvation -60.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds