Wall clock time and date at job start Mon Mar 30 2020 03:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 N 1.46498 * 109.47400 * 119.99892 * 2 1 3 5 5 C 1.36944 * 119.99794 * 295.23865 * 4 2 1 6 6 H 1.07998 * 119.99738 * 235.13067 * 5 4 2 7 7 C 1.38808 * 119.99690 * 55.13386 * 5 4 2 8 8 N 1.31615 * 120.00822 * 37.32325 * 7 5 4 9 9 Si 1.86802 * 119.99634 * 217.32491 * 7 5 4 10 10 H 1.48507 * 109.47033 * 90.00016 * 9 7 5 11 11 H 1.48503 * 109.47364 * 209.99842 * 9 7 5 12 12 H 1.48505 * 109.47308 * 329.99897 * 9 7 5 13 13 C 1.46495 * 120.00441 * 115.23614 * 4 2 1 14 14 H 1.09003 * 110.43318 * 358.92182 * 13 4 2 15 15 C 1.54267 * 110.48824 * 121.45423 * 13 4 2 16 16 C 1.53869 * 106.59784 * 142.42435 * 15 13 4 17 17 C 1.54262 * 106.64451 * 359.97438 * 16 15 13 18 18 C 1.54887 * 110.60409 * 236.29934 * 13 4 2 19 19 H 1.09000 * 110.74965 * 321.82160 * 18 13 4 20 20 O 1.42893 * 110.75623 * 85.00540 * 18 13 4 21 21 H 1.08993 * 109.47516 * 309.32825 * 1 2 3 22 22 H 1.09002 * 109.47059 * 69.33237 * 1 2 3 23 23 H 1.09002 * 109.46879 * 189.33066 * 1 2 3 24 24 H 1.08997 * 109.47570 * 240.00071 * 2 1 3 25 25 H 1.09005 * 109.47065 * 174.41108 * 3 2 1 26 26 H 1.09001 * 109.47062 * 294.40234 * 3 2 1 27 27 H 1.08998 * 109.47479 * 54.41034 * 3 2 1 28 28 H 0.97001 * 120.00638 * 179.97438 * 8 7 5 29 29 H 1.08999 * 110.02846 * 23.14093 * 15 13 4 30 30 H 1.08999 * 110.03549 * 261.70968 * 15 13 4 31 31 H 1.09001 * 110.03165 * 119.28682 * 16 15 13 32 32 H 1.09007 * 110.03208 * 240.66696 * 16 15 13 33 33 H 1.09000 * 110.48826 * 95.08829 * 17 16 15 34 34 H 1.08997 * 110.49134 * 217.74073 * 17 16 15 35 35 H 0.96701 * 114.00563 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7698 -0.1685 2.4375 6 1 2.5881 0.0276 3.1145 7 6 0.4662 0.1084 2.8257 8 7 -0.5127 -0.6937 2.4642 9 14 0.1011 1.6196 3.8613 10 1 -0.1826 2.7734 2.9704 11 1 -1.0802 1.3565 4.7218 12 1 1.2759 1.9304 4.7149 13 6 2.7725 -1.9395 1.0644 14 1 2.8625 -2.2209 0.0151 15 6 4.1679 -1.7981 1.7068 16 6 4.4799 -3.1454 2.3813 17 6 3.2635 -4.0592 2.1265 18 6 2.0950 -3.0733 1.8735 19 1 1.6978 -2.6921 2.8142 20 8 1.0634 -3.6965 1.1058 21 1 -0.3634 0.6512 0.7949 22 1 -0.3633 0.3627 -0.9615 23 1 -0.3633 -1.0141 0.1666 24 1 1.8933 -0.5138 -0.8899 25 1 3.1253 1.4442 0.1001 26 1 1.7607 1.9266 -0.9359 27 1 1.5971 1.9845 0.8357 28 1 -1.4236 -0.5004 2.7357 29 1 4.1573 -1.0016 2.4508 30 1 4.9121 -1.5834 0.9398 31 1 5.3754 -3.5845 1.9417 32 1 4.6216 -3.0026 3.4527 33 1 3.4324 -4.6834 1.2490 34 1 3.0600 -4.6765 3.0015 35 1 0.6076 -4.4133 1.5679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070715195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:45 Heat of formation + Delta-G solvation = -33.548174 kcal Electronic energy + Delta-G solvation = -15725.403814 eV Core-core repulsion = 13337.917468 eV Total energy + Delta-G solvation = -2387.486346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.09260 -35.60959 -34.00193 -31.61000 -30.10514 -26.84677 -26.18785 -25.60434 -23.53000 -19.82484 -19.59610 -19.15339 -16.45296 -15.94133 -15.29644 -14.37831 -14.06863 -13.59711 -13.10457 -12.68055 -12.39584 -12.31204 -11.83259 -11.46156 -11.18915 -10.98962 -10.93159 -10.74683 -10.53589 -10.46602 -10.29341 -10.01507 -9.84362 -9.64742 -9.49450 -9.19910 -8.80710 -7.84987 -6.36355 -5.63169 -3.39788 3.36189 3.45871 3.49442 4.50820 5.12615 5.20611 5.31106 5.45565 5.73584 5.81017 6.16872 6.26868 6.28687 6.33092 6.44094 6.52598 6.53020 6.64201 6.67403 6.76506 6.85446 6.96935 7.04563 7.14980 7.24380 7.26116 7.38516 7.61591 7.92368 8.07006 8.68848 8.74354 9.32332 9.85923 10.64044 11.11239 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028469 B = 0.013088 C = 0.012381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.306065 B = 2138.786528 C = 2261.011593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.180 3.820 3 C -0.145 4.145 4 N -0.568 5.568 5 C -0.293 4.293 6 H 0.049 0.951 7 C 0.057 3.943 8 N -0.829 5.829 9 Si 0.857 3.143 10 H -0.283 1.283 11 H -0.294 1.294 12 H -0.275 1.275 13 C 0.181 3.819 14 H 0.051 0.949 15 C -0.134 4.134 16 C -0.115 4.115 17 C -0.162 4.162 18 C 0.098 3.902 19 H 0.081 0.919 20 O -0.555 6.555 21 H 0.060 0.940 22 H 0.002 0.998 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.041 0.959 26 H 0.030 0.970 27 H 0.054 0.946 28 H 0.252 0.748 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.909 -3.246 -1.628 6.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.074 3.926 3 C -0.204 4.204 4 N -0.288 5.288 5 C -0.422 4.422 6 H 0.067 0.933 7 C -0.150 4.150 8 N -0.464 5.464 9 Si 0.685 3.315 10 H -0.209 1.209 11 H -0.220 1.220 12 H -0.200 1.200 13 C 0.073 3.927 14 H 0.069 0.931 15 C -0.174 4.174 16 C -0.153 4.153 17 C -0.200 4.200 18 C 0.037 3.963 19 H 0.099 0.901 20 O -0.357 6.357 21 H 0.079 0.921 22 H 0.021 0.979 23 H 0.088 0.912 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.907 -2.816 -2.076 6.027 hybrid contribution -0.548 0.400 1.082 1.277 sum 4.359 -2.416 -0.994 5.082 Atomic orbital electron populations 1.22390 0.97214 1.03544 0.96950 1.20343 0.93250 0.90848 0.88181 1.22058 1.00075 0.98922 0.99318 1.43751 1.63064 1.20232 1.01800 1.18345 0.89784 1.40319 0.93768 0.93330 1.25323 0.97492 0.96802 0.95379 1.70507 1.00244 1.31887 1.43758 0.87091 0.77644 0.86285 0.80495 1.20942 1.22020 1.19985 1.21140 0.89520 0.86445 0.95568 0.93067 1.22475 0.98065 0.96759 1.00071 1.21922 0.96857 0.96382 1.00117 1.23072 0.98044 0.98583 1.00341 1.23366 0.85112 0.91288 0.96504 0.90127 1.86510 1.52076 1.52810 1.44311 0.92094 0.97883 0.91181 0.94704 0.93998 0.95137 0.92647 0.93794 0.90572 0.93400 0.93155 0.92576 0.92140 0.92962 0.79885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 7.65 37.15 0.28 -3.15 16 2 C 0.18 4.17 3.37 -67.93 -0.23 3.94 16 3 C -0.14 -3.06 8.98 37.16 0.33 -2.72 16 4 N -0.57 -13.78 2.40 -156.29 -0.38 -14.15 16 5 C -0.29 -7.65 6.42 -15.06 -0.10 -7.75 16 6 H 0.05 1.32 6.98 -52.49 -0.37 0.96 16 7 C 0.06 1.50 3.48 -17.43 -0.06 1.44 16 8 N -0.83 -22.56 10.61 55.49 0.59 -21.98 16 9 Si 0.86 20.63 29.68 -169.99 -5.05 15.58 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.18 3.97 3.12 -66.27 -0.21 3.76 16 14 H 0.05 1.14 7.62 -51.93 -0.40 0.74 16 15 C -0.13 -2.57 6.42 -25.62 -0.16 -2.73 16 16 C -0.11 -1.90 6.80 -25.62 -0.17 -2.07 16 17 C -0.16 -2.78 6.56 -25.03 -0.16 -2.94 16 18 C 0.10 2.08 3.79 -24.70 -0.09 1.99 16 19 H 0.08 1.99 7.19 -51.93 -0.37 1.61 16 20 O -0.55 -11.93 13.45 -35.23 -0.47 -12.40 16 21 H 0.06 1.58 5.55 -51.93 -0.29 1.29 16 22 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 23 H 0.07 1.87 7.33 -51.93 -0.38 1.49 16 24 H 0.03 0.77 7.59 -51.93 -0.39 0.38 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 1.26 7.73 -51.93 -0.40 0.86 16 28 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.08 1.59 6.45 -51.93 -0.34 1.26 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.36 6.18 9.12 45.56 0.42 6.60 16 LS Contribution 273.06 15.07 4.11 4.11 Total: -1.00 -27.77 273.06 -6.80 -34.57 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.04 Total: 4.50 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -0.57 Total: -10.23 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.21 Total: -36.13 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.47 Total: -12.40 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.05 Total: 15.58 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.77 -6.80 -34.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.017 kcal (2) G-P(sol) polarization free energy of solvation -27.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds