Wall clock time and date at job start Mon Mar 30 2020 03:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 N 1.46498 * 109.47400 * 119.99892 * 2 1 3 5 5 C 1.36944 * 119.99794 * 295.23865 * 4 2 1 6 6 H 1.07998 * 119.99738 * 235.13067 * 5 4 2 7 7 C 1.38808 * 119.99690 * 55.13386 * 5 4 2 8 8 N 1.31615 * 120.00822 * 37.32325 * 7 5 4 9 9 Si 1.86802 * 119.99634 * 217.32491 * 7 5 4 10 10 H 1.48507 * 109.47033 * 90.00016 * 9 7 5 11 11 H 1.48503 * 109.47364 * 209.99842 * 9 7 5 12 12 H 1.48505 * 109.47308 * 329.99897 * 9 7 5 13 13 C 1.46495 * 120.00441 * 115.23614 * 4 2 1 14 14 H 1.09003 * 110.43318 * 358.92182 * 13 4 2 15 15 C 1.54267 * 110.48824 * 121.45423 * 13 4 2 16 16 C 1.53869 * 106.59784 * 142.42435 * 15 13 4 17 17 C 1.54262 * 106.64451 * 359.97438 * 16 15 13 18 18 C 1.54887 * 110.60409 * 236.29934 * 13 4 2 19 19 H 1.09000 * 110.74965 * 321.82160 * 18 13 4 20 20 O 1.42893 * 110.75623 * 85.00540 * 18 13 4 21 21 H 1.08993 * 109.47516 * 309.32825 * 1 2 3 22 22 H 1.09002 * 109.47059 * 69.33237 * 1 2 3 23 23 H 1.09002 * 109.46879 * 189.33066 * 1 2 3 24 24 H 1.08997 * 109.47570 * 240.00071 * 2 1 3 25 25 H 1.09005 * 109.47065 * 174.41108 * 3 2 1 26 26 H 1.09001 * 109.47062 * 294.40234 * 3 2 1 27 27 H 1.08998 * 109.47479 * 54.41034 * 3 2 1 28 28 H 0.97001 * 120.00638 * 179.97438 * 8 7 5 29 29 H 1.08999 * 110.02846 * 23.14093 * 15 13 4 30 30 H 1.08999 * 110.03549 * 261.70968 * 15 13 4 31 31 H 1.09001 * 110.03165 * 119.28682 * 16 15 13 32 32 H 1.09007 * 110.03208 * 240.66696 * 16 15 13 33 33 H 1.09000 * 110.48826 * 95.08829 * 17 16 15 34 34 H 1.08997 * 110.49134 * 217.74073 * 17 16 15 35 35 H 0.96701 * 114.00563 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7698 -0.1685 2.4375 6 1 2.5881 0.0276 3.1145 7 6 0.4662 0.1084 2.8257 8 7 -0.5127 -0.6937 2.4642 9 14 0.1011 1.6196 3.8613 10 1 -0.1826 2.7734 2.9704 11 1 -1.0802 1.3565 4.7218 12 1 1.2759 1.9304 4.7149 13 6 2.7725 -1.9395 1.0644 14 1 2.8625 -2.2209 0.0151 15 6 4.1679 -1.7981 1.7068 16 6 4.4799 -3.1454 2.3813 17 6 3.2635 -4.0592 2.1265 18 6 2.0950 -3.0733 1.8735 19 1 1.6978 -2.6921 2.8142 20 8 1.0634 -3.6965 1.1058 21 1 -0.3634 0.6512 0.7949 22 1 -0.3633 0.3627 -0.9615 23 1 -0.3633 -1.0141 0.1666 24 1 1.8933 -0.5138 -0.8899 25 1 3.1253 1.4442 0.1001 26 1 1.7607 1.9266 -0.9359 27 1 1.5971 1.9845 0.8357 28 1 -1.4236 -0.5004 2.7357 29 1 4.1573 -1.0016 2.4508 30 1 4.9121 -1.5834 0.9398 31 1 5.3754 -3.5845 1.9417 32 1 4.6216 -3.0026 3.4527 33 1 3.4324 -4.6834 1.2490 34 1 3.0600 -4.6765 3.0015 35 1 0.6076 -4.4133 1.5679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070715195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:44 Heat of formation + Delta-G solvation = -51.369603 kcal Electronic energy + Delta-G solvation = -15726.176609 eV Core-core repulsion = 13337.917468 eV Total energy + Delta-G solvation = -2388.259141 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.74988 -37.40650 -35.61891 -33.59645 -31.85886 -28.40471 -27.97922 -27.38627 -25.41055 -21.49411 -21.29340 -20.83910 -18.12260 -17.89419 -17.01995 -16.34334 -15.70355 -15.23952 -14.81523 -14.39043 -14.14851 -14.09703 -13.50736 -13.09629 -13.00494 -12.83780 -12.71580 -12.59976 -12.36923 -12.08853 -11.94821 -11.82096 -11.53289 -11.37031 -11.23371 -10.90863 -10.45411 -9.87338 -8.34927 -7.57482 -5.42602 1.41550 1.49375 1.53664 2.52910 3.17121 3.54548 3.70097 4.01367 4.19474 4.36263 4.45671 4.66151 4.74063 4.79404 4.84220 4.89412 4.96433 5.01622 5.09203 5.18470 5.25003 5.28936 5.38683 5.40007 5.48729 5.59368 5.68144 5.75851 5.86935 6.06938 6.67932 7.17979 7.36688 7.94448 8.66749 9.08642 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028469 B = 0.013088 C = 0.012381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.306065 B = 2138.786528 C = 2261.011593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.170 3.830 3 C -0.134 4.134 4 N -0.580 5.580 5 C -0.289 4.289 6 H 0.035 0.965 7 C 0.025 3.975 8 N -0.852 5.852 9 Si 0.905 3.095 10 H -0.284 1.284 11 H -0.297 1.297 12 H -0.272 1.272 13 C 0.168 3.832 14 H 0.048 0.952 15 C -0.127 4.127 16 C -0.109 4.109 17 C -0.148 4.148 18 C 0.098 3.902 19 H 0.039 0.961 20 O -0.574 6.574 21 H 0.039 0.961 22 H 0.025 0.975 23 H 0.037 0.963 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.033 0.967 28 H 0.248 0.752 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -3.545 -2.112 7.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.064 3.936 3 C -0.192 4.192 4 N -0.300 5.300 5 C -0.418 4.418 6 H 0.053 0.947 7 C -0.180 4.180 8 N -0.489 5.489 9 Si 0.733 3.267 10 H -0.211 1.211 11 H -0.224 1.224 12 H -0.197 1.197 13 C 0.061 3.939 14 H 0.066 0.934 15 C -0.167 4.167 16 C -0.147 4.147 17 C -0.186 4.186 18 C 0.038 3.962 19 H 0.057 0.943 20 O -0.379 6.379 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.299 -3.122 -2.551 7.479 hybrid contribution -0.985 0.456 1.187 1.609 sum 5.314 -2.666 -1.364 6.099 Atomic orbital electron populations 1.22185 0.98145 1.01023 0.97294 1.20488 0.92534 0.92279 0.88261 1.21921 1.00207 0.97277 0.99839 1.43912 1.63331 1.21299 1.01501 1.18279 0.89290 1.39969 0.94292 0.94748 1.25737 0.97495 0.98230 0.96509 1.70588 1.00135 1.32798 1.45360 0.86343 0.77188 0.83918 0.79301 1.21108 1.22426 1.19702 1.21385 0.90806 0.85873 0.95797 0.93365 1.22361 0.96700 0.97699 0.99899 1.21918 0.97694 0.94680 1.00415 1.22946 0.96095 0.97941 1.01665 1.23194 0.86159 0.92542 0.94321 0.94265 1.86459 1.52785 1.53647 1.44971 0.94217 0.95597 0.94353 0.93605 0.93313 0.92396 0.94825 0.94273 0.92861 0.91673 0.90082 0.92154 0.90761 0.91338 0.78061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.14 7.65 71.98 0.55 -5.59 16 2 C 0.17 7.76 3.37 44.99 0.15 7.91 16 3 C -0.13 -5.43 8.98 71.98 0.65 -4.78 16 4 N -0.58 -28.07 2.40 -648.37 -1.56 -29.63 16 5 C -0.29 -15.20 6.42 84.03 0.54 -14.66 16 6 H 0.04 1.91 6.98 -2.91 -0.02 1.89 16 7 C 0.03 1.34 3.48 84.86 0.30 1.63 16 8 N -0.85 -47.39 10.61 21.65 0.23 -47.16 16 9 Si 0.90 42.92 29.68 68.60 2.04 44.96 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 13 C 0.17 7.26 3.12 46.07 0.14 7.41 16 14 H 0.05 2.09 7.62 -2.39 -0.02 2.07 16 15 C -0.13 -4.65 6.42 31.32 0.20 -4.45 16 16 C -0.11 -3.29 6.80 31.32 0.21 -3.08 16 17 C -0.15 -4.71 6.56 31.69 0.21 -4.51 16 18 C 0.10 4.14 3.79 31.91 0.12 4.26 16 19 H 0.04 1.97 7.19 -2.39 -0.02 1.96 16 20 O -0.57 -24.56 13.45 -148.98 -2.00 -26.56 16 21 H 0.04 2.05 5.55 -2.39 -0.01 2.04 16 22 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.04 2.06 7.33 -2.39 -0.02 2.04 16 24 H 0.05 1.97 7.59 -2.39 -0.02 1.95 16 25 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.03 1.48 7.73 -2.39 -0.02 1.46 16 28 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 29 H 0.05 2.19 6.45 -2.39 -0.02 2.17 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.37 12.82 9.12 -74.06 -0.68 12.14 16 Total: -1.00 -59.34 273.06 2.16 -57.19 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.38 Total: 17.06 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 3.07 Total: -15.85 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -1.33 Total: -76.79 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -2.00 Total: -26.56 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.04 Total: 44.96 kcal Total: -59.34 2.16 -57.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.818 kcal (2) G-P(sol) polarization free energy of solvation -59.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds