Wall clock time and date at job start Mon Mar 30 2020 03:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46561 * 2 1 4 4 N 1.46500 * 109.47074 * 119.99443 * 2 1 3 5 5 C 1.36935 * 120.00030 * 117.37894 * 4 2 1 6 6 H 1.07992 * 120.00364 * 151.08566 * 5 4 2 7 7 C 1.38817 * 119.99788 * 331.08720 * 5 4 2 8 8 N 1.31624 * 119.99910 * 341.63404 * 7 5 4 9 9 Si 1.86793 * 120.00193 * 161.63749 * 7 5 4 10 10 H 1.48503 * 109.47091 * 59.99899 * 9 7 5 11 11 H 1.48495 * 109.47256 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47093 * 299.99961 * 9 7 5 13 13 C 1.46502 * 119.99869 * 297.38093 * 4 2 1 14 14 C 1.53181 * 109.53886 * 239.55000 * 13 4 2 15 15 C 1.53098 * 109.16172 * 183.15184 * 14 13 4 16 16 O 1.42905 * 109.41233 * 57.61345 * 15 14 13 17 17 C 1.42900 * 114.09636 * 298.84215 * 16 15 14 18 18 C 1.53096 * 109.41847 * 61.15700 * 17 16 15 19 19 H 1.08999 * 109.47719 * 299.99962 * 1 2 3 20 20 H 1.09004 * 109.47366 * 60.00802 * 1 2 3 21 21 H 1.09007 * 109.47090 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47227 * 240.00126 * 2 1 3 23 23 H 1.08997 * 109.47135 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47507 * 299.99522 * 3 2 1 25 25 H 1.09000 * 109.47569 * 59.99465 * 3 2 1 26 26 H 0.96999 * 120.00168 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.54921 * 359.82124 * 13 4 2 28 28 H 1.08998 * 109.52632 * 303.06299 * 14 13 4 29 29 H 1.09004 * 109.52111 * 63.25346 * 14 13 4 30 30 H 1.09000 * 109.48346 * 297.63324 * 15 14 13 31 31 H 1.08997 * 109.48105 * 177.59263 * 15 14 13 32 32 H 1.08996 * 109.48120 * 301.16985 * 17 16 15 33 33 H 1.09002 * 109.49169 * 181.14846 * 17 16 15 34 34 H 1.09002 * 109.52418 * 182.48462 * 18 17 16 35 35 H 1.09004 * 109.51954 * 62.29865 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.7607 -1.8343 1.0714 6 1 3.4909 -2.0892 1.8252 7 6 2.5747 -2.6664 -0.0241 8 7 1.4749 -2.5742 -0.7413 9 14 3.8852 -3.9169 -0.4803 10 1 4.0897 -4.8553 0.6523 11 1 3.4485 -4.6765 -1.6792 12 1 5.1591 -3.2133 -0.7764 13 6 1.7124 -0.1572 2.5260 14 6 3.0170 0.1572 3.2645 15 6 2.6895 0.6391 4.6803 16 8 1.9291 -0.3625 5.3590 17 6 0.6769 -0.6639 4.7398 18 6 0.9236 -1.1981 3.3264 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5137 -0.8901 21 1 -0.3634 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 3.1299 1.4427 0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6765 1.9565 0.8899 26 1 1.3447 -3.1559 -1.5065 27 1 1.1197 0.7521 2.4268 28 1 3.6308 -0.7419 3.3187 29 1 3.5589 0.9377 2.7304 30 1 2.1099 1.5606 4.6256 31 1 3.6155 0.8237 5.2248 32 1 0.0710 0.2405 4.6859 33 1 0.1529 -1.4180 5.3271 34 1 -0.0316 -1.3870 2.8365 35 1 1.4951 -2.1247 3.3818 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070715207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:29 Heat of formation + Delta-G solvation = -53.419865 kcal Electronic energy + Delta-G solvation = -15577.779429 eV Core-core repulsion = 13189.431382 eV Total energy + Delta-G solvation = -2388.348047 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31157 -38.00469 -34.09523 -33.71660 -31.87207 -30.52060 -27.66421 -26.38541 -24.39850 -24.22607 -21.28340 -20.94307 -18.30555 -17.05383 -16.77148 -16.45140 -16.05295 -15.60900 -15.33219 -14.78451 -14.34862 -13.92848 -13.76115 -13.32940 -13.13641 -12.79817 -12.75500 -12.74645 -12.28494 -12.27762 -12.00010 -11.87969 -11.74805 -11.39531 -11.18713 -10.87264 -10.38802 -10.34357 -8.52434 -7.79426 -5.22694 1.46076 1.47846 1.53539 2.54342 3.06247 3.33505 3.58891 4.12924 4.15995 4.26059 4.40960 4.46136 4.57053 4.66889 4.70587 4.77398 4.85972 4.87527 4.96388 4.99867 5.12251 5.17310 5.21295 5.28044 5.39383 5.54725 5.63018 5.73908 5.83636 6.04549 6.36251 6.51588 7.27960 8.01233 8.46805 9.24414 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.012252 C = 0.010303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.863703 B = 2284.838032 C = 2716.975023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.173 3.827 3 C -0.150 4.150 4 N -0.591 5.591 5 C -0.246 4.246 6 H 0.054 0.946 7 C -0.043 4.043 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.283 1.283 11 H -0.296 1.296 12 H -0.283 1.283 13 C 0.172 3.828 14 C -0.156 4.156 15 C 0.067 3.933 16 O -0.404 6.404 17 C 0.069 3.931 18 C -0.151 4.151 19 H 0.037 0.963 20 H 0.043 0.957 21 H 0.036 0.964 22 H 0.060 0.940 23 H 0.038 0.962 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.246 0.754 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 7.777 6.744 10.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.067 3.933 3 C -0.208 4.208 4 N -0.311 5.311 5 C -0.377 4.377 6 H 0.072 0.928 7 C -0.239 4.239 8 N -0.563 5.563 9 Si 0.779 3.221 10 H -0.210 1.210 11 H -0.222 1.222 12 H -0.210 1.210 13 C 0.065 3.935 14 C -0.195 4.195 15 C -0.010 4.010 16 O -0.323 6.323 17 C -0.008 4.008 18 C -0.191 4.191 19 H 0.056 0.944 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.721 7.595 6.748 10.185 hybrid contribution 0.504 -1.086 -0.948 1.527 sum -0.217 6.509 5.800 8.721 Atomic orbital electron populations 1.21942 0.98044 1.00130 0.98752 1.20287 0.92214 0.90221 0.90615 1.22216 1.00110 0.97579 1.00928 1.44208 1.60960 1.25971 0.99997 1.19130 1.12391 0.99068 1.07103 0.92798 1.25561 0.97950 0.99323 1.01081 1.70159 1.24655 1.41091 1.20429 0.85619 0.79973 0.79454 0.77019 1.20963 1.22188 1.20973 1.20421 0.93453 0.94562 0.85022 1.22545 0.99442 1.00932 0.96618 1.22672 0.96310 0.90206 0.91776 1.87832 1.32732 1.59978 1.51753 1.22630 0.85262 1.00325 0.92563 1.22499 1.00157 1.00145 0.96298 0.94426 0.93759 0.94498 0.92191 0.94290 0.92323 0.92897 0.94524 0.91846 0.93758 0.91371 0.91748 0.87736 0.91814 0.88322 0.93109 0.94156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.53 9.05 71.98 0.65 -4.88 16 2 C 0.17 7.88 2.33 44.99 0.10 7.99 16 3 C -0.15 -5.50 9.14 71.98 0.66 -4.84 16 4 N -0.59 -28.15 2.33 -653.60 -1.52 -29.66 16 5 C -0.25 -13.24 8.29 84.04 0.70 -12.55 16 6 H 0.05 2.96 6.71 -2.91 -0.02 2.94 16 7 C -0.04 -2.38 4.85 84.86 0.41 -1.96 16 8 N -0.92 -52.49 10.30 21.65 0.22 -52.27 16 9 Si 0.95 45.30 29.59 68.60 2.03 47.33 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 13 C 0.17 6.82 1.82 45.11 0.08 6.90 16 14 C -0.16 -5.54 5.43 30.69 0.17 -5.38 16 15 C 0.07 1.91 6.84 72.01 0.49 2.41 16 16 O -0.40 -13.15 10.77 -148.98 -1.60 -14.75 16 17 C 0.07 2.12 6.84 72.01 0.49 2.61 16 18 C -0.15 -5.93 5.44 30.68 0.17 -5.76 16 19 H 0.04 1.44 7.21 -2.39 -0.02 1.42 16 20 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 21 H 0.04 1.82 7.33 -2.38 -0.02 1.80 16 22 H 0.06 3.21 5.85 -2.39 -0.01 3.20 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 25 H 0.05 1.75 6.90 -2.39 -0.02 1.74 16 26 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 27 H 0.06 2.34 6.06 -2.39 -0.01 2.32 16 28 H 0.04 1.81 6.84 -2.39 -0.02 1.80 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 31 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.04 1.83 7.57 -2.38 -0.02 1.81 16 Total: -1.00 -59.74 270.41 4.09 -55.65 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.04 Total: 9.16 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 3.92 Total: -15.46 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -1.30 Total: -81.93 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -1.60 Total: -14.75 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -59.74 4.09 -55.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.228 kcal (2) G-P(sol) polarization free energy of solvation -59.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds