Wall clock time and date at job start Mon Mar 30 2020 04:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99654 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 8 8 O 1.42900 * 109.47116 * 299.99731 * 7 6 5 9 9 C 1.52996 * 109.47346 * 179.97438 * 7 6 5 10 10 N 1.46505 * 109.46998 * 59.99584 * 9 7 6 11 11 C 1.36944 * 119.99831 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00078 * 359.97438 * 11 10 9 13 13 C 1.38813 * 119.99730 * 180.02562 * 11 10 9 14 14 N 1.31621 * 120.00066 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99788 * 179.97438 * 13 11 10 16 16 H 1.48511 * 109.46938 * 90.00217 * 15 13 11 17 17 H 1.48497 * 109.47465 * 209.99972 * 15 13 11 18 18 H 1.48500 * 109.47425 * 330.00714 * 15 13 11 19 19 C 1.52997 * 109.47415 * 59.99860 * 7 6 5 20 20 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 21 21 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 22 22 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 24 24 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 25 25 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 26 26 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 27 27 H 1.08992 * 109.47534 * 180.02562 * 6 5 4 28 28 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 29 29 H 0.96705 * 114.00291 * 300.00715 * 8 7 6 30 30 H 1.09001 * 109.47367 * 179.97438 * 9 7 6 31 31 H 1.09004 * 109.47368 * 299.99812 * 9 7 6 32 32 H 0.96993 * 120.00140 * 0.02562 * 10 9 7 33 33 H 0.96997 * 119.99364 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.46922 * 180.02562 * 19 7 6 35 35 H 1.09000 * 109.47140 * 59.99976 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 3.5705 -0.7203 1.2490 8 8 4.0463 0.6271 1.2487 9 6 4.0804 -1.4415 2.4982 10 7 5.5455 -1.4415 2.4982 11 6 6.2302 -2.0349 3.5251 12 1 5.6902 -2.5025 4.3351 13 6 7.6183 -2.0344 3.5254 14 7 8.2764 -1.4632 2.5389 15 14 8.5523 -2.8432 4.9264 16 1 8.8003 -4.2700 4.5974 17 1 9.8495 -2.1478 5.1231 18 1 7.7494 -2.7550 6.1726 19 6 2.0405 -0.7209 1.2493 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6767 -1.7490 -1.2491 24 1 1.6768 -0.2075 -2.1392 25 1 3.9330 0.3071 -1.2497 26 1 3.9334 -1.2342 -2.1396 27 1 5.1705 -1.4408 -0.0002 28 1 3.7176 -2.4693 0.0000 29 1 5.0103 0.7039 1.2484 30 1 3.7174 -0.9274 3.3882 31 1 3.7171 -2.4692 2.4983 32 1 6.0305 -1.0212 1.7710 33 1 9.2464 -1.4626 2.5394 34 1 1.6772 -0.2066 2.1391 35 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083469526.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:12 Heat of formation + Delta-G solvation = -68.949564 kcal Electronic energy + Delta-G solvation = -15008.739905 eV Core-core repulsion = 12619.718440 eV Total energy + Delta-G solvation = -2389.021465 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.35578 -35.58480 -33.88843 -31.93383 -31.27813 -29.45438 -26.25877 -25.30663 -22.69077 -21.78247 -19.96625 -19.42225 -17.39260 -15.79434 -15.17410 -14.83895 -14.48051 -13.95599 -13.75596 -13.27321 -12.97905 -12.79450 -12.32998 -12.04470 -11.86719 -11.58675 -11.55526 -11.06621 -10.86362 -10.78593 -10.58958 -10.38250 -10.19818 -10.13135 -9.91285 -9.47456 -9.04728 -8.89427 -6.95184 -5.79256 -3.07790 3.43037 3.48307 3.50034 4.57036 4.71468 4.90425 4.93837 5.13530 5.36977 5.39240 5.56347 5.60680 5.64573 5.73700 5.77718 5.88587 5.95688 5.97545 6.09153 6.15303 6.23292 6.31283 6.43907 6.50310 6.52825 6.60487 6.74496 6.82380 6.87069 7.68845 8.24709 8.40848 9.50545 10.06121 10.40402 11.43759 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.061144 B = 0.006987 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.823637 B = 4006.366625 C = 4199.579055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.141 4.141 7 C 0.130 3.870 8 O -0.561 6.561 9 C 0.127 3.873 10 N -0.730 5.730 11 C -0.239 4.239 12 H 0.070 0.930 13 C -0.014 4.014 14 N -0.935 5.935 15 Si 0.908 3.092 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.282 1.282 19 C -0.095 4.095 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.380 0.620 30 H 0.026 0.974 31 H 0.024 0.976 32 H 0.381 0.619 33 H 0.255 0.745 34 H 0.065 0.935 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.491 1.796 -6.713 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.179 4.179 7 C 0.089 3.911 8 O -0.368 6.368 9 C -0.001 4.001 10 N -0.375 5.375 11 C -0.370 4.370 12 H 0.088 0.912 13 C -0.209 4.209 14 N -0.584 5.584 15 Si 0.739 3.261 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.208 1.208 19 C -0.133 4.133 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.228 0.772 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.215 0.785 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.093 1.841 -6.554 14.757 hybrid contribution 1.416 -0.560 0.579 1.629 sum -11.677 1.282 -5.975 13.179 Atomic orbital electron populations 1.21846 0.95911 1.01374 1.01259 1.21049 0.94411 1.00588 0.94611 0.90425 1.21580 0.95993 1.00071 0.97228 1.21466 0.95173 1.01217 0.97448 1.22136 1.01936 0.99328 0.94455 1.21323 0.93425 0.82380 0.93955 1.86359 1.27314 1.26045 1.97105 1.21341 0.86610 0.97071 0.95067 1.42306 0.99278 1.68785 1.27150 1.19229 0.89061 1.28442 1.00269 0.91175 1.24733 0.96340 1.01428 0.98438 1.69642 1.06889 1.49313 1.32523 0.86167 0.79411 0.78807 0.81671 1.21730 1.21740 1.20764 1.21505 0.93154 1.00574 0.98094 0.92865 0.93086 0.93003 0.92479 0.92645 0.91558 0.92654 0.90674 0.91645 0.77158 0.95621 0.95804 0.78490 0.93468 0.91583 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.19 37.16 0.34 -1.22 16 2 C -0.09 -1.14 2.57 -90.62 -0.23 -1.37 16 3 H 0.08 1.12 7.68 -51.93 -0.40 0.72 16 4 C -0.11 -1.38 5.20 -26.73 -0.14 -1.51 16 5 C -0.12 -1.62 5.78 -26.73 -0.15 -1.77 16 6 C -0.14 -2.32 4.74 -26.73 -0.13 -2.44 16 7 C 0.13 2.24 0.71 -90.62 -0.06 2.18 16 8 O -0.56 -10.21 11.63 -35.23 -0.41 -10.62 16 9 C 0.13 2.65 5.40 -4.04 -0.02 2.63 16 10 N -0.73 -18.33 5.08 -59.90 -0.30 -18.64 16 11 C -0.24 -6.72 9.99 -15.06 -0.15 -6.88 16 12 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 13 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 14 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 15 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.10 -1.40 4.23 -26.73 -0.11 -1.51 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.97 7.68 -51.93 -0.40 0.57 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.41 6.86 -51.93 -0.36 1.05 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.38 6.95 7.86 45.56 0.36 7.31 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.38 9.77 5.59 -40.82 -0.23 9.54 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 275.32 15.07 4.15 4.15 Total: -1.00 -29.70 275.32 -6.84 -36.54 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.22 Total: 10.78 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -0.76 Total: -12.39 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.42 Total: -45.93 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.41 Total: -10.62 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.70 -6.84 -36.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083469526.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.408 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds