Wall clock time and date at job start Mon Mar 30 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99654 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 8 8 O 1.42900 * 109.47116 * 299.99731 * 7 6 5 9 9 C 1.52996 * 109.47346 * 179.97438 * 7 6 5 10 10 N 1.46505 * 109.46998 * 59.99584 * 9 7 6 11 11 C 1.36944 * 119.99831 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00078 * 359.97438 * 11 10 9 13 13 C 1.38813 * 119.99730 * 180.02562 * 11 10 9 14 14 N 1.31621 * 120.00066 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99788 * 179.97438 * 13 11 10 16 16 H 1.48511 * 109.46938 * 90.00217 * 15 13 11 17 17 H 1.48497 * 109.47465 * 209.99972 * 15 13 11 18 18 H 1.48500 * 109.47425 * 330.00714 * 15 13 11 19 19 C 1.52997 * 109.47415 * 59.99860 * 7 6 5 20 20 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 21 21 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 22 22 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 24 24 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 25 25 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 26 26 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 27 27 H 1.08992 * 109.47534 * 180.02562 * 6 5 4 28 28 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 29 29 H 0.96705 * 114.00291 * 300.00715 * 8 7 6 30 30 H 1.09001 * 109.47367 * 179.97438 * 9 7 6 31 31 H 1.09004 * 109.47368 * 299.99812 * 9 7 6 32 32 H 0.96993 * 120.00140 * 0.02562 * 10 9 7 33 33 H 0.96997 * 119.99364 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.46922 * 180.02562 * 19 7 6 35 35 H 1.09000 * 109.47140 * 59.99976 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 3.5705 -0.7203 1.2490 8 8 4.0463 0.6271 1.2487 9 6 4.0804 -1.4415 2.4982 10 7 5.5455 -1.4415 2.4982 11 6 6.2302 -2.0349 3.5251 12 1 5.6902 -2.5025 4.3351 13 6 7.6183 -2.0344 3.5254 14 7 8.2764 -1.4632 2.5389 15 14 8.5523 -2.8432 4.9264 16 1 8.8003 -4.2700 4.5974 17 1 9.8495 -2.1478 5.1231 18 1 7.7494 -2.7550 6.1726 19 6 2.0405 -0.7209 1.2493 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6767 -1.7490 -1.2491 24 1 1.6768 -0.2075 -2.1392 25 1 3.9330 0.3071 -1.2497 26 1 3.9334 -1.2342 -2.1396 27 1 5.1705 -1.4408 -0.0002 28 1 3.7176 -2.4693 0.0000 29 1 5.0103 0.7039 1.2484 30 1 3.7174 -0.9274 3.3882 31 1 3.7171 -2.4692 2.4983 32 1 6.0305 -1.0212 1.7710 33 1 9.2464 -1.4626 2.5394 34 1 1.6772 -0.2066 2.1391 35 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083469526.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:11 Heat of formation + Delta-G solvation = -88.767202 kcal Electronic energy + Delta-G solvation = -15009.599262 eV Core-core repulsion = 12619.718440 eV Total energy + Delta-G solvation = -2389.880822 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.67742 -36.98571 -35.71981 -33.37282 -32.86247 -31.03471 -27.38757 -27.01226 -24.55729 -22.95633 -21.32188 -20.61040 -19.43134 -17.27707 -16.75568 -16.44978 -15.93447 -15.34129 -15.08034 -14.87984 -14.62554 -14.29637 -13.51632 -13.29113 -13.15363 -13.02004 -12.81764 -12.77132 -12.68305 -12.18429 -12.06584 -11.86921 -11.75649 -11.54562 -11.26793 -11.02243 -10.80319 -10.46557 -9.04553 -7.98523 -5.27623 1.46397 1.47822 1.56494 2.53634 3.28978 3.41293 3.67832 3.83219 3.90261 4.06081 4.17895 4.36807 4.42056 4.55535 4.59838 4.75548 4.82322 4.84389 4.91985 5.01134 5.06784 5.08405 5.15076 5.24140 5.36110 5.41077 5.44005 5.47494 5.52763 5.67543 6.23218 6.75975 7.30433 8.02327 8.27430 9.24620 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.061144 B = 0.006987 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.823637 B = 4006.366625 C = 4199.579055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 H 0.061 0.939 4 C -0.107 4.107 5 C -0.111 4.111 6 C -0.136 4.136 7 C 0.134 3.866 8 O -0.565 6.565 9 C 0.125 3.875 10 N -0.738 5.738 11 C -0.250 4.250 12 H 0.072 0.928 13 C -0.071 4.071 14 N -0.967 5.967 15 Si 0.974 3.026 16 H -0.286 1.286 17 H -0.293 1.293 18 H -0.272 1.272 19 C -0.094 4.094 20 H 0.053 0.947 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.376 0.624 30 H 0.016 0.984 31 H 0.028 0.972 32 H 0.375 0.625 33 H 0.253 0.747 34 H 0.062 0.938 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.954 1.326 -7.022 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 H 0.079 0.921 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.174 4.174 7 C 0.093 3.907 8 O -0.372 6.372 9 C -0.002 4.002 10 N -0.382 5.382 11 C -0.382 4.382 12 H 0.090 0.910 13 C -0.263 4.263 14 N -0.617 5.617 15 Si 0.803 3.197 16 H -0.213 1.213 17 H -0.220 1.220 18 H -0.197 1.197 19 C -0.132 4.132 20 H 0.072 0.928 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.224 0.776 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.208 0.792 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.600 1.367 -6.857 16.188 hybrid contribution 1.836 -0.410 0.684 2.002 sum -12.763 0.957 -6.173 14.210 Atomic orbital electron populations 1.21798 0.93765 1.02302 1.02041 1.21011 0.96146 0.99323 0.93864 0.92096 1.21575 0.94288 1.00932 0.97676 1.21440 0.96723 1.00328 0.96408 1.22056 1.00041 0.99816 0.95450 1.21385 0.95217 0.81541 0.92523 1.86366 1.27020 1.26733 1.97039 1.21503 0.84346 0.97613 0.96689 1.42437 1.01002 1.68430 1.26364 1.19604 0.89677 1.28062 1.00844 0.90982 1.25544 0.97251 1.02544 1.00989 1.69792 1.06798 1.50796 1.34322 0.85131 0.77776 0.77695 0.79075 1.21267 1.21989 1.19660 1.21549 0.90714 1.01767 0.99148 0.92773 0.91725 0.91979 0.91385 0.90731 0.92499 0.91431 0.93665 0.91301 0.77598 0.96567 0.95408 0.79151 0.93849 0.91934 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.19 71.98 0.66 -1.92 16 2 C -0.08 -2.00 2.57 -10.79 -0.03 -2.03 16 3 H 0.06 1.65 7.68 -2.39 -0.02 1.64 16 4 C -0.11 -2.35 5.20 30.59 0.16 -2.19 16 5 C -0.11 -2.96 5.78 30.59 0.18 -2.78 16 6 C -0.14 -4.42 4.74 30.59 0.15 -4.28 16 7 C 0.13 4.58 0.71 -10.80 -0.01 4.57 16 8 O -0.57 -20.73 11.63 -148.98 -1.73 -22.46 16 9 C 0.13 5.25 5.40 86.38 0.47 5.72 16 10 N -0.74 -37.69 5.08 -343.44 -1.74 -39.44 16 11 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 12 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 13 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 14 N -0.97 -58.76 13.06 21.65 0.28 -58.48 16 15 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 16 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 17 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 C -0.09 -2.60 4.23 30.60 0.13 -2.47 16 20 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.61 7.68 -2.39 -0.02 1.59 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.73 6.86 -2.39 -0.02 1.72 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.38 14.25 7.86 -74.05 -0.58 13.67 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.38 19.83 5.59 -92.71 -0.52 19.31 16 33 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -62.55 275.32 1.80 -60.75 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -0.04 Total: 33.59 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 3.01 Total: -22.31 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -1.46 Total: -97.92 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -1.73 Total: -22.46 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -62.55 1.80 -60.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083469526.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.021 kcal (2) G-P(sol) polarization free energy of solvation -62.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds