Wall clock time and date at job start Mon Mar 30 2020 04:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47505 * 2 1 4 4 C 1.52994 * 109.47263 * 120.00892 * 2 1 3 5 5 C 1.52996 * 109.47604 * 59.99297 * 4 2 1 6 6 C 1.53005 * 109.46822 * 59.99956 * 5 4 2 7 7 C 1.52997 * 109.47589 * 300.00344 * 6 5 4 8 8 O 1.42902 * 109.46879 * 300.00279 * 7 6 5 9 9 C 1.52990 * 109.47383 * 179.97438 * 7 6 5 10 10 N 1.46504 * 109.47079 * 60.00142 * 9 7 6 11 11 C 1.36939 * 120.00047 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99988 * 0.02562 * 11 10 9 13 13 C 1.38806 * 120.00000 * 179.72335 * 11 10 9 14 14 N 1.31621 * 120.00001 * 180.27971 * 13 11 10 15 15 Si 1.86800 * 120.00096 * 0.27612 * 13 11 10 16 16 H 1.48498 * 109.46957 * 89.99812 * 15 13 11 17 17 H 1.48503 * 109.47301 * 210.00301 * 15 13 11 18 18 H 1.48498 * 109.47128 * 330.00052 * 15 13 11 19 19 C 1.53002 * 109.47144 * 59.99495 * 7 6 5 20 20 H 1.08995 * 109.47691 * 191.23500 * 1 2 3 21 21 H 1.09003 * 109.46887 * 311.23330 * 1 2 3 22 22 H 1.09000 * 109.47298 * 71.22849 * 1 2 3 23 23 H 1.09003 * 109.47431 * 180.02562 * 4 2 1 24 24 H 1.09008 * 109.46950 * 299.99314 * 4 2 1 25 25 H 1.08993 * 109.47701 * 180.02562 * 5 4 2 26 26 H 1.09003 * 109.47333 * 300.00803 * 5 4 2 27 27 H 1.09004 * 109.47372 * 179.97438 * 6 5 4 28 28 H 1.09003 * 109.46814 * 60.00747 * 6 5 4 29 29 H 0.96704 * 113.99467 * 299.99060 * 8 7 6 30 30 H 1.09000 * 109.47685 * 299.99964 * 9 7 6 31 31 H 1.09004 * 109.47504 * 179.97438 * 9 7 6 32 32 H 0.96999 * 119.99846 * 359.97438 * 10 9 7 33 33 H 0.97001 * 119.99854 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.47041 * 59.99948 * 19 7 6 35 35 H 1.08993 * 109.47526 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.5300 -2.1638 1.2491 6 6 2.0399 -2.8850 -0.0003 7 6 1.5299 -2.1637 -1.2495 8 8 0.1009 -2.1636 -1.2494 9 6 2.0403 -2.8844 -2.4987 10 7 1.5523 -4.2658 -2.4992 11 6 1.8831 -5.1085 -3.5266 12 1 2.5041 -4.7550 -4.3364 13 6 1.4255 -6.4190 -3.5241 14 7 1.7480 -7.2306 -4.5088 15 14 0.3521 -7.0308 -2.1230 16 1 -1.0761 -6.7949 -2.4543 17 1 0.5803 -8.4845 -1.9230 18 1 0.6988 -6.2995 -0.8780 19 6 2.0399 -0.7212 -1.2494 20 1 -0.3634 -1.0079 0.2002 21 1 -0.3633 0.6774 0.7729 22 1 -0.3634 0.3307 -0.9730 23 1 3.1301 -0.7210 1.2493 24 1 1.6768 -0.2076 2.1392 25 1 1.8929 -2.6777 2.1391 26 1 0.4399 -2.1638 1.2490 27 1 1.6769 -3.9128 -0.0002 28 1 3.1299 -2.8851 -0.0003 29 1 -0.2925 -3.0470 -1.2495 30 1 3.1303 -2.8842 -2.4987 31 1 1.6766 -2.3708 -3.3887 32 1 0.9949 -4.5835 -1.7716 33 1 1.4279 -8.1463 -4.5072 34 1 3.1299 -0.7212 -1.2494 35 1 1.6763 -0.2071 -2.1390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083469528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:14 Heat of formation + Delta-G solvation = -54.974040 kcal Electronic energy + Delta-G solvation = -15330.005343 eV Core-core repulsion = 12941.589902 eV Total energy + Delta-G solvation = -2388.415441 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.78581 -35.64122 -34.03559 -31.78801 -31.29407 -29.90741 -26.41425 -25.56915 -22.53398 -22.11173 -20.37705 -18.64953 -17.96425 -16.13253 -15.66696 -14.73366 -14.37084 -14.06843 -13.62392 -13.55626 -13.21836 -12.83860 -12.31856 -12.23248 -11.92387 -11.80430 -11.47610 -11.19036 -10.91382 -10.85451 -10.72830 -10.33854 -10.25196 -10.22554 -9.74231 -9.53522 -9.08128 -8.93330 -7.27182 -5.79334 -3.15491 3.32222 3.34858 3.42071 4.51982 4.55507 4.80626 4.87244 5.04542 5.24071 5.30325 5.49346 5.52557 5.54124 5.58843 5.70089 5.81714 5.88739 6.02384 6.07725 6.12519 6.17796 6.22987 6.39471 6.46542 6.47387 6.48399 6.65714 6.71073 6.89265 7.93003 8.06311 8.38826 9.16764 9.88870 10.07521 11.39116 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.048114 B = 0.008723 C = 0.008271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.812602 B = 3208.993354 C = 3384.616285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.061 0.939 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.142 4.142 7 C 0.127 3.873 8 O -0.549 6.549 9 C 0.132 3.868 10 N -0.753 5.753 11 C -0.244 4.244 12 H 0.090 0.910 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.884 3.116 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.278 1.278 19 C -0.097 4.097 20 H 0.088 0.912 21 H 0.032 0.968 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.368 0.632 30 H 0.032 0.968 31 H 0.035 0.965 32 H 0.357 0.643 33 H 0.260 0.740 34 H 0.072 0.928 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 12.899 11.631 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.079 0.921 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.180 4.180 7 C 0.086 3.914 8 O -0.355 6.355 9 C 0.005 3.995 10 N -0.400 5.400 11 C -0.374 4.374 12 H 0.108 0.892 13 C -0.192 4.192 14 N -0.581 5.581 15 Si 0.714 3.286 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.205 1.205 19 C -0.135 4.135 20 H 0.107 0.893 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.216 0.784 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.191 0.809 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.722 13.458 11.411 17.659 hybrid contribution -0.696 -1.273 0.843 1.678 sum -1.418 12.185 12.254 17.339 Atomic orbital electron populations 1.22055 0.94477 1.03352 1.00409 1.21017 0.96966 0.98038 0.94427 0.92093 1.21551 1.00063 0.95911 0.97478 1.21542 1.01524 0.95254 0.97278 1.22160 1.01504 0.99629 0.94722 1.21387 0.81154 0.95007 0.93850 1.86607 1.19043 1.33134 1.96723 1.21312 0.97172 0.85746 0.95282 1.42661 1.62303 1.08477 1.26527 1.19052 1.26785 0.91585 0.99944 0.89201 1.24679 1.00510 0.96205 0.97758 1.69700 1.49697 1.06291 1.32448 0.86571 0.81142 0.78276 0.82611 1.20909 1.21656 1.20470 1.21534 0.99948 0.93743 0.98304 0.89335 0.94908 0.93085 0.92425 0.92540 0.92693 0.91153 0.91396 0.91235 0.78378 0.95018 0.94726 0.80946 0.93024 0.90972 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 7.81 37.16 0.29 -1.56 16 2 C -0.09 -1.04 3.20 -90.62 -0.29 -1.33 16 3 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.11 -1.29 5.45 -26.74 -0.15 -1.43 16 5 C -0.12 -1.50 5.59 -26.73 -0.15 -1.65 16 6 C -0.14 -2.14 4.74 -26.73 -0.13 -2.26 16 7 C 0.13 1.99 0.71 -90.63 -0.06 1.93 16 8 O -0.55 -8.71 8.77 -35.23 -0.31 -9.02 16 9 C 0.13 2.59 5.40 -4.04 -0.02 2.57 16 10 N -0.75 -17.59 4.88 -59.91 -0.29 -17.89 16 11 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 12 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 13 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 14 N -0.93 -29.40 13.97 55.49 0.78 -28.62 16 15 Si 0.88 21.81 27.74 -169.99 -4.72 17.10 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 18 H -0.28 -6.36 6.51 56.52 0.37 -6.00 16 19 C -0.10 -1.32 4.58 -26.73 -0.12 -1.44 16 20 H 0.09 1.21 3.79 -51.93 -0.20 1.01 16 21 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.91 5.94 -51.93 -0.31 0.60 16 27 H 0.07 1.14 6.86 -51.93 -0.36 0.78 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.37 5.74 7.86 45.56 0.36 6.10 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.36 7.95 3.45 -40.82 -0.14 7.81 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 263.31 15.07 3.97 3.97 Total: -1.00 -30.51 263.31 -6.34 -36.85 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.88 Total: 9.84 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -0.88 Total: -12.23 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.48 Total: -46.51 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.31 Total: -9.02 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.10 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.51 -6.34 -36.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083469528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.125 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds