Wall clock time and date at job start Mon Mar 30 2020 04:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47505 * 2 1 4 4 C 1.52994 * 109.47263 * 120.00892 * 2 1 3 5 5 C 1.52996 * 109.47604 * 59.99297 * 4 2 1 6 6 C 1.53005 * 109.46822 * 59.99956 * 5 4 2 7 7 C 1.52997 * 109.47589 * 300.00344 * 6 5 4 8 8 O 1.42902 * 109.46879 * 300.00279 * 7 6 5 9 9 C 1.52990 * 109.47383 * 179.97438 * 7 6 5 10 10 N 1.46504 * 109.47079 * 60.00142 * 9 7 6 11 11 C 1.36939 * 120.00047 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99988 * 0.02562 * 11 10 9 13 13 C 1.38806 * 120.00000 * 179.72335 * 11 10 9 14 14 N 1.31621 * 120.00001 * 180.27971 * 13 11 10 15 15 Si 1.86800 * 120.00096 * 0.27612 * 13 11 10 16 16 H 1.48498 * 109.46957 * 89.99812 * 15 13 11 17 17 H 1.48503 * 109.47301 * 210.00301 * 15 13 11 18 18 H 1.48498 * 109.47128 * 330.00052 * 15 13 11 19 19 C 1.53002 * 109.47144 * 59.99495 * 7 6 5 20 20 H 1.08995 * 109.47691 * 191.23500 * 1 2 3 21 21 H 1.09003 * 109.46887 * 311.23330 * 1 2 3 22 22 H 1.09000 * 109.47298 * 71.22849 * 1 2 3 23 23 H 1.09003 * 109.47431 * 180.02562 * 4 2 1 24 24 H 1.09008 * 109.46950 * 299.99314 * 4 2 1 25 25 H 1.08993 * 109.47701 * 180.02562 * 5 4 2 26 26 H 1.09003 * 109.47333 * 300.00803 * 5 4 2 27 27 H 1.09004 * 109.47372 * 179.97438 * 6 5 4 28 28 H 1.09003 * 109.46814 * 60.00747 * 6 5 4 29 29 H 0.96704 * 113.99467 * 299.99060 * 8 7 6 30 30 H 1.09000 * 109.47685 * 299.99964 * 9 7 6 31 31 H 1.09004 * 109.47504 * 179.97438 * 9 7 6 32 32 H 0.96999 * 119.99846 * 359.97438 * 10 9 7 33 33 H 0.97001 * 119.99854 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.47041 * 59.99948 * 19 7 6 35 35 H 1.08993 * 109.47526 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.5300 -2.1638 1.2491 6 6 2.0399 -2.8850 -0.0003 7 6 1.5299 -2.1637 -1.2495 8 8 0.1009 -2.1636 -1.2494 9 6 2.0403 -2.8844 -2.4987 10 7 1.5523 -4.2658 -2.4992 11 6 1.8831 -5.1085 -3.5266 12 1 2.5041 -4.7550 -4.3364 13 6 1.4255 -6.4190 -3.5241 14 7 1.7480 -7.2306 -4.5088 15 14 0.3521 -7.0308 -2.1230 16 1 -1.0761 -6.7949 -2.4543 17 1 0.5803 -8.4845 -1.9230 18 1 0.6988 -6.2995 -0.8780 19 6 2.0399 -0.7212 -1.2494 20 1 -0.3634 -1.0079 0.2002 21 1 -0.3633 0.6774 0.7729 22 1 -0.3634 0.3307 -0.9730 23 1 3.1301 -0.7210 1.2493 24 1 1.6768 -0.2076 2.1392 25 1 1.8929 -2.6777 2.1391 26 1 0.4399 -2.1638 1.2490 27 1 1.6769 -3.9128 -0.0002 28 1 3.1299 -2.8851 -0.0003 29 1 -0.2925 -3.0470 -1.2495 30 1 3.1303 -2.8842 -2.4987 31 1 1.6766 -2.3708 -3.3887 32 1 0.9949 -4.5835 -1.7716 33 1 1.4279 -8.1463 -4.5072 34 1 3.1299 -0.7212 -1.2494 35 1 1.6763 -0.2071 -2.1390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083469528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:13 Heat of formation + Delta-G solvation = -75.932269 kcal Electronic energy + Delta-G solvation = -15330.914160 eV Core-core repulsion = 12941.589902 eV Total energy + Delta-G solvation = -2389.324258 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.97160 -37.05098 -35.69539 -33.61011 -32.49965 -31.40508 -27.43926 -27.23599 -24.27028 -23.29558 -21.75012 -19.99533 -19.69409 -17.33450 -17.04483 -16.66345 -15.74098 -15.37675 -14.99321 -14.82362 -14.63011 -14.49920 -13.80396 -13.53985 -13.29059 -13.02665 -12.87099 -12.79752 -12.48997 -12.17397 -11.89635 -11.87030 -11.82544 -11.32674 -11.22900 -11.05862 -10.69908 -10.35810 -9.35431 -8.05839 -5.40771 1.34449 1.40113 1.46602 2.45491 3.22687 3.33235 3.52018 3.78829 3.89048 3.91224 4.24192 4.38778 4.41571 4.51463 4.52671 4.75219 4.82424 4.94082 4.94518 5.05634 5.09239 5.14192 5.20649 5.22908 5.38194 5.44390 5.49317 5.56579 5.70999 5.88668 6.16680 6.76656 7.03555 7.76619 7.97024 9.15706 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.048114 B = 0.008723 C = 0.008271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.812602 B = 3208.993354 C = 3384.616285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 H 0.078 0.922 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.140 4.140 7 C 0.136 3.864 8 O -0.548 6.548 9 C 0.129 3.871 10 N -0.750 5.750 11 C -0.240 4.240 12 H 0.052 0.948 13 C -0.064 4.064 14 N -0.984 5.984 15 Si 0.957 3.043 16 H -0.274 1.274 17 H -0.296 1.296 18 H -0.248 1.248 19 C -0.098 4.098 20 H 0.078 0.922 21 H 0.047 0.953 22 H 0.037 0.963 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.369 0.631 30 H 0.029 0.971 31 H 0.021 0.979 32 H 0.366 0.634 33 H 0.259 0.741 34 H 0.082 0.918 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.530 14.171 14.308 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.097 0.903 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.178 4.178 7 C 0.095 3.905 8 O -0.355 6.355 9 C 0.002 3.998 10 N -0.397 5.397 11 C -0.371 4.371 12 H 0.070 0.930 13 C -0.255 4.255 14 N -0.634 5.634 15 Si 0.784 3.216 16 H -0.200 1.200 17 H -0.222 1.222 18 H -0.172 1.172 19 C -0.136 4.136 20 H 0.097 0.903 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.217 0.783 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.200 0.800 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.327 14.784 14.114 20.482 hybrid contribution -0.448 -1.608 -0.091 1.672 sum -1.775 13.176 14.023 19.324 Atomic orbital electron populations 1.22015 0.94934 1.03021 1.00162 1.21028 0.96507 0.98848 0.93784 0.90347 1.21548 1.00568 0.94910 0.97685 1.21522 1.01415 0.95995 0.96250 1.22127 1.01496 0.98758 0.95453 1.21338 0.81042 0.96019 0.92115 1.86644 1.19018 1.33192 1.96618 1.21493 0.97004 0.84105 0.97183 1.42561 1.62385 1.09342 1.25448 1.19009 1.25540 0.92430 1.00072 0.93001 1.25565 1.02605 0.96368 1.00966 1.69896 1.51683 1.06686 1.35134 0.85388 0.79024 0.77268 0.79960 1.19955 1.22238 1.17238 1.21583 1.00616 0.92177 0.99227 0.90331 0.93403 0.94408 0.91640 0.90806 0.91476 0.91308 0.93224 0.91198 0.78323 0.95251 0.96099 0.79961 0.93238 0.89911 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 7.81 71.98 0.56 -2.70 16 2 C -0.08 -1.74 3.20 -10.79 -0.03 -1.78 16 3 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.11 -2.08 5.45 30.59 0.17 -1.92 16 5 C -0.11 -2.53 5.59 30.59 0.17 -2.35 16 6 C -0.14 -3.90 4.74 30.59 0.15 -3.75 16 7 C 0.14 4.05 0.71 -10.80 -0.01 4.04 16 8 O -0.55 -16.52 8.77 -148.98 -1.31 -17.82 16 9 C 0.13 5.02 5.40 86.38 0.47 5.48 16 10 N -0.75 -34.81 4.88 -343.46 -1.68 -36.48 16 11 C -0.24 -13.88 10.47 84.03 0.88 -13.00 16 12 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 13 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 14 N -0.98 -63.55 13.97 21.65 0.30 -63.25 16 15 Si 0.96 44.79 27.74 68.60 1.90 46.69 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 18 H -0.25 -10.24 6.51 99.48 0.65 -9.59 16 19 C -0.10 -2.45 4.58 30.60 0.14 -2.31 16 20 H 0.08 1.94 3.79 -2.39 -0.01 1.93 16 21 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.04 0.93 8.09 -2.39 -0.02 0.92 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.56 5.94 -2.39 -0.01 1.54 16 27 H 0.05 1.55 6.86 -2.39 -0.02 1.53 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.37 10.87 7.86 -74.05 -0.58 10.29 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.37 15.70 3.45 -92.71 -0.32 15.38 16 33 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -66.06 263.31 2.29 -63.77 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.11 Total: 28.68 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 2.96 Total: -21.58 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -1.37 Total: -99.73 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -1.31 Total: -17.82 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.69 kcal Total: -66.06 2.29 -63.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083469528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.166 kcal (2) G-P(sol) polarization free energy of solvation -66.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds