Wall clock time and date at job start Mon Mar 30 2020 04:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47657 * 2 1 4 4 C 1.53006 * 109.47083 * 240.00003 * 2 1 3 5 5 C 1.53001 * 109.46858 * 300.00016 * 4 2 1 6 6 C 1.52996 * 109.47479 * 300.00205 * 5 4 2 7 7 C 1.52998 * 109.47325 * 59.99791 * 6 5 4 8 8 O 1.42904 * 109.46994 * 60.00258 * 7 6 5 9 9 C 1.52995 * 109.47027 * 180.02562 * 7 6 5 10 10 N 1.46501 * 109.47609 * 304.99820 * 9 7 6 11 11 C 1.36929 * 120.00606 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99602 * 0.02562 * 11 10 9 13 13 C 1.38811 * 120.00454 * 179.72343 * 11 10 9 14 14 N 1.31625 * 119.99690 * 0.28108 * 13 11 10 15 15 Si 1.86800 * 120.00155 * 180.27510 * 13 11 10 16 16 H 1.48493 * 109.47227 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46731 * 120.00318 * 15 13 11 18 18 H 1.48504 * 109.47007 * 240.00052 * 15 13 11 19 19 C 1.52995 * 109.47128 * 120.00240 * 2 1 3 20 20 H 1.08997 * 109.47478 * 168.76261 * 1 2 3 21 21 H 1.08998 * 109.47255 * 288.76714 * 1 2 3 22 22 H 1.09010 * 109.46983 * 48.76228 * 1 2 3 23 23 H 1.08994 * 109.47129 * 180.02562 * 4 2 1 24 24 H 1.08996 * 109.47286 * 60.00144 * 4 2 1 25 25 H 1.09002 * 109.47007 * 179.97438 * 5 4 2 26 26 H 1.09003 * 109.47149 * 59.99938 * 5 4 2 27 27 H 1.09003 * 109.47104 * 299.99629 * 6 5 4 28 28 H 1.09000 * 109.47092 * 180.02562 * 6 5 4 29 29 H 0.96699 * 113.99690 * 59.99862 * 8 7 6 30 30 H 1.09007 * 109.46833 * 185.00285 * 9 7 6 31 31 H 1.08999 * 109.47521 * 65.00418 * 9 7 6 32 32 H 0.97006 * 119.99371 * 0.02562 * 10 9 7 33 33 H 0.96995 * 119.99780 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.46947 * 299.99663 * 19 2 1 35 35 H 1.09003 * 109.47449 * 179.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1638 -1.2492 6 6 2.0398 -2.8850 0.0000 7 6 1.5299 -2.1638 1.2492 8 8 0.1008 -2.1637 1.2492 9 6 2.0403 -2.8847 2.4984 10 7 1.6531 -4.2964 2.4401 11 6 2.0022 -5.1448 3.4567 12 1 2.5626 -4.7730 4.3018 13 6 1.6304 -6.4811 3.4042 14 7 0.9470 -6.9341 2.3744 15 14 2.0999 -7.6366 4.7948 16 1 2.8601 -6.8864 5.8265 17 1 0.8700 -8.2052 5.4025 18 1 2.9424 -8.7369 4.2609 19 6 2.0399 -0.7213 1.2492 20 1 -0.3634 -1.0079 -0.2003 21 1 -0.3634 0.3306 0.9730 22 1 -0.3633 0.6775 -0.7729 23 1 3.1299 -0.7217 -1.2491 24 1 1.6766 -0.2075 -2.1393 25 1 1.8928 -2.6775 -2.1394 26 1 0.4399 -2.1637 -1.2492 27 1 3.1298 -2.8852 0.0000 28 1 1.6768 -3.9128 -0.0003 29 1 -0.2925 -3.0471 1.2492 30 1 1.6057 -2.4252 3.3862 31 1 3.1266 -2.8075 2.5442 32 1 1.1495 -4.6302 1.6812 33 1 0.6875 -7.8679 2.3376 34 1 1.6766 -0.2074 2.1392 35 1 3.1299 -0.7217 1.2490 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083469530.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:16 Heat of formation + Delta-G solvation = -59.318728 kcal Electronic energy + Delta-G solvation = -15244.082085 eV Core-core repulsion = 12855.478244 eV Total energy + Delta-G solvation = -2388.603841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.62297 -35.43498 -33.90496 -31.65514 -31.12435 -29.44212 -26.29906 -25.28729 -22.78765 -22.07381 -20.24139 -18.51888 -17.40202 -15.96543 -15.55730 -14.71047 -14.18805 -13.87901 -13.55308 -13.37381 -13.15221 -12.84851 -12.12180 -12.02300 -11.76196 -11.62633 -11.31965 -10.94366 -10.85120 -10.74036 -10.57349 -10.21981 -10.15121 -10.04528 -9.84750 -9.40607 -8.93119 -8.90168 -6.94993 -5.79544 -3.07900 3.42356 3.48297 3.50366 4.57468 4.69138 4.95585 5.00248 5.19500 5.44182 5.46146 5.57193 5.65355 5.66919 5.74219 5.87634 5.98200 6.10177 6.15637 6.19922 6.27119 6.29895 6.34454 6.51030 6.57967 6.59249 6.69712 6.81694 6.84148 7.02554 7.69295 8.24042 8.40053 9.50531 10.06341 10.40730 11.43437 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.059489 B = 0.007377 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.558928 B = 3794.563498 C = 3894.720093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.058 0.942 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.140 4.140 7 C 0.131 3.869 8 O -0.552 6.552 9 C 0.127 3.873 10 N -0.730 5.730 11 C -0.238 4.238 12 H 0.070 0.930 13 C -0.014 4.014 14 N -0.934 5.934 15 Si 0.907 3.093 16 H -0.281 1.281 17 H -0.291 1.291 18 H -0.292 1.292 19 C -0.098 4.098 20 H 0.090 0.910 21 H 0.049 0.951 22 H 0.031 0.969 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.374 0.626 30 H 0.026 0.974 31 H 0.023 0.977 32 H 0.381 0.619 33 H 0.255 0.745 34 H 0.065 0.935 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.019 11.856 -6.341 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.077 0.923 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.178 4.178 7 C 0.091 3.909 8 O -0.359 6.359 9 C -0.001 4.001 10 N -0.376 5.376 11 C -0.369 4.369 12 H 0.088 0.912 13 C -0.210 4.210 14 N -0.583 5.583 15 Si 0.739 3.261 16 H -0.206 1.206 17 H -0.218 1.218 18 H -0.219 1.219 19 C -0.136 4.136 20 H 0.108 0.892 21 H 0.068 0.932 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.222 0.778 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.216 0.784 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.186 12.441 -6.178 13.941 hybrid contribution 0.136 -1.474 0.587 1.593 sum 1.322 10.966 -5.591 12.380 Atomic orbital electron populations 1.22055 0.94478 1.03477 1.00255 1.21006 0.96971 0.97878 0.94519 0.92312 1.21557 0.99960 0.96152 0.97354 1.21538 1.01528 0.94995 0.97460 1.22118 1.01141 1.00148 0.94377 1.21288 0.81225 0.94490 0.93932 1.86550 1.18977 1.33702 1.96712 1.21346 0.97114 0.86524 0.95121 1.42359 1.66978 1.03259 1.24990 1.19274 1.28552 0.90025 0.99079 0.91163 1.24732 1.00961 0.97127 0.98167 1.69652 1.43581 1.14804 1.30275 0.86104 0.77582 0.81007 0.81431 1.20589 1.21844 1.21872 1.21538 0.99784 0.94140 0.98118 0.89152 0.93212 0.95004 0.92565 0.92653 0.92768 0.91143 0.91679 0.90590 0.77766 0.95602 0.95894 0.78369 0.93542 0.91598 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 7.81 37.15 0.29 -1.68 16 2 C -0.09 -1.11 3.19 -90.62 -0.29 -1.39 16 3 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -1.40 5.45 -26.73 -0.15 -1.55 16 5 C -0.12 -1.63 5.59 -26.73 -0.15 -1.78 16 6 C -0.14 -2.29 4.69 -26.73 -0.13 -2.41 16 7 C 0.13 2.21 0.71 -90.62 -0.06 2.14 16 8 O -0.55 -9.40 8.77 -35.23 -0.31 -9.71 16 9 C 0.13 2.61 5.43 -4.04 -0.02 2.59 16 10 N -0.73 -18.17 5.08 -59.91 -0.30 -18.48 16 11 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 12 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 13 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 14 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 15 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 C -0.10 -1.42 4.58 -26.73 -0.12 -1.54 16 20 H 0.09 1.32 3.79 -51.93 -0.20 1.13 16 21 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 22 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.00 5.94 -51.93 -0.31 0.69 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.42 6.58 -51.93 -0.34 1.08 16 29 H 0.37 6.47 8.19 45.56 0.37 6.84 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.38 9.70 5.56 -40.82 -0.23 9.47 16 33 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 266.43 15.07 4.02 4.02 Total: -1.00 -29.31 266.43 -6.67 -35.97 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -4.89 Total: 10.87 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.88 Total: -12.95 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.42 Total: -45.64 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.31 Total: -9.71 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.31 -6.67 -35.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083469530.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.345 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds