Wall clock time and date at job start Mon Mar 30 2020 04:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.52999 * 109.47317 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47159 * 300.00546 * 5 4 2 7 7 C 1.52997 * 109.47452 * 59.99536 * 6 5 4 8 8 O 1.42905 * 109.46915 * 59.99882 * 7 6 5 9 9 C 1.52997 * 109.47232 * 179.97438 * 7 6 5 10 10 N 1.46501 * 109.47384 * 305.00230 * 9 7 6 11 11 C 1.36930 * 120.00373 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99672 * 0.02562 * 11 10 9 13 13 C 1.38811 * 120.00353 * 179.97438 * 11 10 9 14 14 N 1.31617 * 119.99814 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00083 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47374 * 90.00162 * 15 13 11 17 17 H 1.48501 * 109.47341 * 210.00010 * 15 13 11 18 18 H 1.48502 * 109.47288 * 329.99934 * 15 13 11 19 19 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 20 20 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.08996 * 109.47853 * 300.00202 * 4 2 1 24 24 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 25 25 H 1.09000 * 109.47486 * 180.02562 * 5 4 2 26 26 H 1.09002 * 109.46716 * 60.00091 * 5 4 2 27 27 H 1.09002 * 109.46935 * 299.99411 * 6 5 4 28 28 H 1.09001 * 109.46812 * 179.97438 * 6 5 4 29 29 H 0.96696 * 114.00040 * 60.00337 * 8 7 6 30 30 H 1.09001 * 109.46547 * 65.00156 * 9 7 6 31 31 H 1.08998 * 109.47097 * 184.99640 * 9 7 6 32 32 H 0.97005 * 119.99534 * 359.97438 * 10 9 7 33 33 H 0.96994 * 120.00010 * 179.97438 * 14 13 11 34 34 H 1.08992 * 109.47399 * 300.00166 * 19 2 1 35 35 H 1.09004 * 109.46724 * 60.00652 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2491 6 6 4.0795 -1.4434 -0.0002 7 6 3.5696 -0.7222 -1.2495 8 8 4.0464 0.6250 -1.2497 9 6 4.0797 -1.4434 -2.4987 10 7 5.5397 -1.5486 -2.4399 11 6 6.2235 -2.1610 -3.4560 12 1 5.6865 -2.5662 -4.3009 13 6 7.6070 -2.2602 -3.4006 14 7 8.2614 -1.7660 -2.3711 15 14 8.5398 -3.0950 -4.7870 16 1 8.9016 -2.0881 -5.8169 17 1 9.7755 -3.7175 -4.2478 18 1 7.6839 -4.1432 -5.3987 19 6 2.0401 -0.7213 -1.2492 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.6766 -0.2075 2.1393 24 1 1.6766 -1.7489 1.2493 25 1 3.9332 -1.2360 2.1388 26 1 3.9336 0.3057 1.2488 27 1 3.7158 -2.4710 0.0000 28 1 5.1695 -1.4434 -0.0005 29 1 5.0104 0.7010 -1.2499 30 1 3.6450 -2.4420 -2.5445 31 1 3.7913 -0.8805 -3.3864 32 1 6.0220 -1.1844 -1.6812 33 1 9.2281 -1.8356 -2.3322 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083469532.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:18 Heat of formation + Delta-G solvation = -68.614989 kcal Electronic energy + Delta-G solvation = -15013.353259 eV Core-core repulsion = 12624.346302 eV Total energy + Delta-G solvation = -2389.006957 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.35882 -35.57242 -33.92165 -31.92765 -31.28119 -29.43265 -26.25445 -25.31045 -22.69961 -21.78584 -19.95781 -19.42080 -17.37313 -15.78790 -15.18138 -14.83968 -14.49573 -13.94085 -13.75262 -13.27079 -12.98649 -12.81356 -12.32621 -12.04297 -11.84475 -11.57943 -11.55173 -11.08624 -10.83707 -10.79729 -10.58527 -10.37742 -10.20074 -10.11808 -9.91748 -9.46072 -9.04972 -8.89620 -6.95142 -5.79197 -3.07723 3.43124 3.48301 3.49847 4.57289 4.71393 4.90653 4.94156 5.13790 5.37622 5.39731 5.56396 5.60739 5.65157 5.74071 5.78142 5.88920 5.96001 5.98002 6.09947 6.15108 6.24010 6.30993 6.44071 6.50846 6.53453 6.61036 6.75843 6.82466 6.88265 7.68952 8.24481 8.40369 9.50701 10.06373 10.40828 11.43822 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060707 B = 0.007014 C = 0.006684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.121161 B = 3990.960158 C = 4187.869518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.141 4.141 7 C 0.130 3.870 8 O -0.562 6.562 9 C 0.127 3.873 10 N -0.730 5.730 11 C -0.239 4.239 12 H 0.070 0.930 13 C -0.014 4.014 14 N -0.935 5.935 15 Si 0.908 3.092 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.282 1.282 19 C -0.095 4.095 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.379 0.621 30 H 0.024 0.976 31 H 0.026 0.974 32 H 0.381 0.619 33 H 0.255 0.745 34 H 0.070 0.930 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 2.434 6.368 14.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.096 0.904 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.178 4.178 7 C 0.089 3.911 8 O -0.369 6.369 9 C -0.001 4.001 10 N -0.376 5.376 11 C -0.370 4.370 12 H 0.088 0.912 13 C -0.209 4.209 14 N -0.584 5.584 15 Si 0.739 3.261 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.208 1.208 19 C -0.133 4.133 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.228 0.772 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.216 0.784 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.064 2.464 6.215 14.675 hybrid contribution 1.414 -0.583 -0.572 1.633 sum -11.650 1.880 5.644 13.081 Atomic orbital electron populations 1.21847 0.95915 1.01382 1.01251 1.21047 0.94409 1.00565 0.94620 0.90440 1.21580 0.96016 1.00078 0.97208 1.21470 0.95155 1.01184 0.97497 1.22132 1.01994 0.99354 0.94366 1.21320 0.93417 0.82313 0.94030 1.86359 1.27239 1.26160 1.97121 1.21347 0.86687 0.97011 0.95081 1.42354 0.99892 1.70324 1.25029 1.19230 0.89422 1.29267 0.99103 0.91191 1.24729 0.96386 1.01675 0.98148 1.69639 1.07268 1.51171 1.30297 0.86169 0.79450 0.79017 0.81430 1.21691 1.21764 1.20784 1.21492 0.93154 1.00592 0.98079 0.92995 0.93079 0.92881 0.92645 0.92478 0.92640 0.91582 0.91604 0.90578 0.77210 0.95798 0.95572 0.78380 0.93471 0.91138 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.19 37.16 0.34 -1.22 16 2 C -0.09 -1.14 2.58 -90.62 -0.23 -1.37 16 3 H 0.08 1.11 7.68 -51.93 -0.40 0.71 16 4 C -0.11 -1.38 5.20 -26.73 -0.14 -1.52 16 5 C -0.12 -1.63 5.78 -26.73 -0.15 -1.78 16 6 C -0.14 -2.34 4.69 -26.73 -0.13 -2.46 16 7 C 0.13 2.24 0.71 -90.65 -0.06 2.18 16 8 O -0.56 -10.12 11.63 -35.23 -0.41 -10.53 16 9 C 0.13 2.64 5.43 -4.04 -0.02 2.62 16 10 N -0.73 -18.34 5.07 -59.91 -0.30 -18.64 16 11 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 12 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 13 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 14 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 15 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C -0.10 -1.39 4.22 -26.76 -0.11 -1.51 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.97 7.68 -51.93 -0.40 0.57 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.44 6.57 -51.93 -0.34 1.10 16 29 H 0.38 6.83 8.19 45.56 0.37 7.20 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.38 9.79 5.56 -40.82 -0.23 9.57 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 275.31 15.07 4.15 4.15 Total: -1.00 -29.70 275.31 -6.81 -36.51 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.19 Total: 10.79 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.76 Total: -12.44 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.42 Total: -45.94 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.41 Total: -10.53 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.70 -6.81 -36.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083469532.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.110 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds